Rroxscaffold_5G00357760

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000377
Physical Location & Seq
Reverse (-)
37609799 .. 37639586
29788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357760.1

Sequence Viewer

Length: 888 bp
ATGGAGGGTTTGGGATCCGGGCTCCTCCCGGCGTCATGGAGGTCCGATGCGGGCACTAGGCCGAGTGGTGGATTGGATGTTGTAGAAGCGGCGGCTCTAGTTCTGCTGCGCGATCGAATCGTGCTCTATTGGATCCCTTCTTCCACGGTTGGCAGCGGCGTGGTGGTGTTCTTTGTCCGATCGGCGAATTTGGAAGGACGGGGGTTTCGCCTCTATGAGATGTCGGTGGCGAGAACTCATGGGGAGGATGCTGCTCTTCCTAAGGTTTGCGGGTCTGCTCAAAGAGACGGCGCCGAAGTTAGGCTAGAGAGTCGGTGTGGTGTCAATGCGGCGCTGGCTGGAGTGATGATGTGGGGTTGGTGTGACGGCGCCGGCGGCAAGCACAAAAAGGTTGTTGAATGGGCTGCGAGGCAGACCCATAGGATAATAGTTTCAGAAATTTTCAACTCAAATTACCATATGGATAAGGCCTTGTGCTCTTGTGTTTACTCCCCTGAGCTTCACTCAATAGGTGGAGTGGTATTGCGCGTTAGCGGTGTCTCTTCGACATTTCCACTGGGACGGCTCTCCAACCTCTCGATTGTCAAATCCGCCTCCGCCAGTGTGCCATCCAAGGCGGAGCTCCAGAAGTTCGGCCTCTCCGACGACGATCTCAGAGACTTCGTCAAGGGACTCACTTCCGAATTTTTGATTCAGATCTTCAAATGCGCACCATTTCGATCGAATAGTCGACTCTCTCTGATCCTTCGTGCTCTGCACTTCGCTCCTCGCAGCTCAGTTCGTTCAAACACTCGTGCAACCTCTGGAGAGGGTCTATATGAAGGCCTGAATTGGCTCTCCAACAACATTGCTAACAAGAACATGGTAAACATTTTCATGACCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

295

Amino Acids

31.91

Weight (kDa)

9.34

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 709
AccB1I GGYRCC 2 cut(s) 290, 368
AccI GTMKAC 1 cut(s) 730
AccII CGCG 2 cut(s) 111, 528
AclWI GGATC 5 cut(s) 9, 22, 127, 140, 736
AcsI RAATTY 3 cut(s) 187, 438, 683
AcyI GRCGYC 3 cut(s) 32, 291, 369
AfiI CCNNNNNNNGG 2 cut(s) 68, 300
AgsI TTSAA 4 cut(s) 398, 445, 703, 786
AluBI AGCT 3 cut(s) 499, 622, 774
AluI AGCT 3 cut(s) 499, 622, 774
Alw21I GWGCWC 4 cut(s) 126, 479, 624, 754
Alw26I GTCTC 3 cut(s) 279, 544, 651
AlwI GGATC 5 cut(s) 9, 22, 127, 140, 736
AoxI GGCC 4 cut(s) 59, 468, 634, 823
ApeKI GCWGC 5 cut(s) 106, 153, 251, 404, 771
ApoI RAATTY 3 cut(s) 187, 438, 683
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspLEI GCGC 6 cut(s) 111, 293, 334, 371, 528, 710
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 2 cut(s) 19, 29
AvaII GGWCC 1 cut(s) 42
AxyI CCTNAGG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 56
BamHI GGATCC 2 cut(s) 14, 132
BanI GGYRCC 2 cut(s) 290, 368
BanII GRGCYC 2 cut(s) 24, 624
BauI CACGAG 1 cut(s) 792
Bbv12I GWGCWC 4 cut(s) 126, 479, 624, 754
BbvI GCAGC 5 cut(s) 93, 165, 238, 391, 783
BccI CCATC 1 cut(s) 616
BceAI ACGGC 3 cut(s) 304, 382, 578
BcnI CCSGG 2 cut(s) 19, 29
BcoDI GTCTC 3 cut(s) 279, 544, 651
BfaI CTAG 3 cut(s) 57, 98, 305
BfoI RGCGCY 3 cut(s) 294, 335, 372
BglII AGATCT 1 cut(s) 696
Bme1390I CCNGG 2 cut(s) 19, 29
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 5 cut(s) 16, 23, 134, 292, 370
BmrFI CCNGG 2 cut(s) 19, 29
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 2 cut(s) 37, 238
BmuI ACTGGG 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 3 cut(s) 360, 608, 825
Bpu10I CCTNAGC 1 cut(s) 495
BpuMI CCSGG 2 cut(s) 19, 29
BsaBI GATNNNNATC 1 cut(s) 695
BsaHI GRCGYC 3 cut(s) 32, 291, 369
BsaJI CCNNGG 2 cut(s) 144, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 300
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 561, 600
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 1 cut(s) 695
BseDI CCNNGG 2 cut(s) 144, 612
BseGI GGATG 3 cut(s) 82, 253, 608
BseJI GATNNNNATC 1 cut(s) 695
BseLI CCNNNNNNNGG 2 cut(s) 68, 300
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 3 cut(s) 486, 667, 789
BseNI ACTGG 2 cut(s) 561, 600
BseRI GAGGAG 2 cut(s) 14, 756
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 5 cut(s) 93, 165, 238, 391, 783
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 2 cut(s) 111, 528
Bsh1285I CGRYCG 3 cut(s) 115, 182, 722
BshFI GGCC 4 cut(s) 61, 470, 636, 825
BshNI GGYRCC 2 cut(s) 290, 368
BsiEI CGRYCG 3 cut(s) 115, 182, 722
BsiHKAI GWGCWC 4 cut(s) 126, 479, 624, 754
BsiSI CCGG 3 cut(s) 18, 29, 372
BslFI GGGAC 2 cut(s) 573, 684
BslI CCNNNNNNNGG 2 cut(s) 68, 300
BsmAI GTCTC 3 cut(s) 279, 544, 651
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 573, 684
BsnI GGCC 4 cut(s) 61, 470, 636, 825
Bsp1286I GDGCHC 6 cut(s) 24, 56, 126, 479, 624, 754
Bsp143I GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
BspANI GGCC 4 cut(s) 61, 470, 636, 825
BspCNI CTCAG 3 cut(s) 487, 666, 788
BspFNI CGCG 2 cut(s) 111, 528
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 5 cut(s) 16, 23, 134, 292, 370
BspPI GGATC 5 cut(s) 9, 22, 127, 140, 736
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 2 cut(s) 290, 368
BsrDI GCAATG 1 cut(s) 846
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 2 cut(s) 561, 600
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 144, 612
BssMI GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
BssNI GRCGYC 3 cut(s) 32, 291, 369
BssSI CACGAG 1 cut(s) 792
BssT1I CCWWGG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 792
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 261, 547
BstACI GRCGYC 3 cut(s) 32, 291, 369
BstC8I GCNNGC 4 cut(s) 52, 336, 373, 380
BstDEI CTNAG 4 cut(s) 261, 495, 653, 775
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 82, 253, 608
BstFNI CGCG 2 cut(s) 111, 528
BstH2I RGCGCY 3 cut(s) 294, 335, 372
BstHHI GCGC 6 cut(s) 111, 293, 334, 371, 528, 710
BstKTI GATC 8 cut(s) 17, 115, 135, 182, 652, 699, 722, 744
BstMAI GTCTC 3 cut(s) 279, 544, 651
BstMBI GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
BstMCI CGRYCG 3 cut(s) 115, 182, 722
BstMWI GCNNNNNNNGC 2 cut(s) 335, 375
BstSCI CCNGG 2 cut(s) 17, 27
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 2 cut(s) 111, 528
BstV1I GCAGC 5 cut(s) 93, 165, 238, 391, 783
BstX2I RGATCY 3 cut(s) 14, 132, 696
BstYI RGATCY 3 cut(s) 14, 132, 696
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 4 cut(s) 61, 470, 636, 825
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 82, 253, 608
BtsIMutI CAGTG 2 cut(s) 554, 607
Cac8I GCNNGC 4 cut(s) 52, 336, 373, 380
CciI TCATGA 1 cut(s) 876
CfoI GCGC 6 cut(s) 111, 293, 334, 371, 528, 710
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 42
CseI GACGC 1 cut(s) 21
CviAII CATG 4 cut(s) 36, 239, 862, 877
DdeI CTNAG 4 cut(s) 261, 495, 653, 775
DinI GGCGCC 2 cut(s) 292, 370
DpnI GATC 8 cut(s) 16, 114, 134, 181, 651, 698, 721, 743
DpnII GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
Eam1104I CTCTTC 2 cut(s) 261, 547
EarI CTCTTC 2 cut(s) 261, 547
EciI GGCGGA 3 cut(s) 580, 586, 632
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 612
Eco147I AGGCCT 2 cut(s) 470, 825
Eco24I GRGCYC 2 cut(s) 24, 624
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 622
Eco81I CCTNAGG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 612
EcoT38I GRGCYC 2 cut(s) 24, 624
EgeI GGCGCC 2 cut(s) 292, 370
EheI GGCGCC 2 cut(s) 292, 370
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 4 cut(s) 39, 242, 865, 880
FaqI GGGAC 2 cut(s) 573, 684
FatI CATG 4 cut(s) 35, 238, 861, 876
FauI CCCGC 2 cut(s) 43, 263
FauNDI CATATG 1 cut(s) 459
FblI GTMKAC 1 cut(s) 730
FokI GGATG 3 cut(s) 89, 260, 595
FriOI GRGCYC 2 cut(s) 24, 624
FspAI RTGCGCAY 1 cut(s) 709
FspBI CTAG 3 cut(s) 57, 98, 305
FspI TGCGCA 1 cut(s) 709
GlaI GCGC 6 cut(s) 110, 292, 333, 370, 527, 709
GsuI CTGGAG 3 cut(s) 360, 608, 825
HaeII RGCGCY 3 cut(s) 294, 335, 372
HaeIII GGCC 4 cut(s) 61, 470, 636, 825
HapII CCGG 3 cut(s) 18, 29, 372
HgaI GACGC 1 cut(s) 21
HhaI GCGC 6 cut(s) 111, 293, 334, 371, 528, 710
Hin1I GRCGYC 3 cut(s) 32, 291, 369
Hin1II CATG 4 cut(s) 39, 242, 865, 880
Hin6I GCGC 6 cut(s) 109, 291, 332, 369, 526, 708
HinP1I GCGC 6 cut(s) 109, 291, 332, 369, 526, 708
HincII GTYRAC 1 cut(s) 731
HindII GTYRAC 1 cut(s) 731
HinfI GANTC 5 cut(s) 117, 310, 672, 691, 732
HpaII CCGG 3 cut(s) 18, 29, 372
Hpy166II GTNNAC 3 cut(s) 487, 731, 868
Hpy188I TCNGA 8 cut(s) 46, 179, 436, 643, 656, 682, 696, 741
Hpy188III TCNNGA 4 cut(s) 577, 625, 804, 877
Hpy8I GTNNAC 3 cut(s) 487, 731, 868
Hpy99I CGWCG 2 cut(s) 647, 650
HpyAV CCTTC 4 cut(s) 147, 188, 755, 815
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 757, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 375
HpyF3I CTNAG 4 cut(s) 261, 495, 653, 775
Hsp92I GRCGYC 3 cut(s) 32, 291, 369
Hsp92II CATG 4 cut(s) 39, 242, 865, 880
HspAI GCGC 6 cut(s) 109, 291, 332, 369, 526, 708
KasI GGCGCC 2 cut(s) 290, 368
KroI GCCGGC 1 cut(s) 371
KroNI GCCGGC 1 cut(s) 373
Kzo9I GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 4 cut(s) 27, 619, 627, 769
Lsp1109I GCAGC 5 cut(s) 93, 165, 238, 391, 783
LweI GCATC 2 cut(s) 37, 238
MaeI CTAG 3 cut(s) 57, 98, 305
MaeIII GTNAC 1 cut(s) 362
MalI GATC 8 cut(s) 16, 114, 134, 181, 651, 698, 721, 743
MboI GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
MboII GAAGA 4 cut(s) 132, 248, 534, 691
MflI RGATCY 3 cut(s) 14, 132, 696
MhlI GDGCHC 6 cut(s) 24, 56, 126, 479, 624, 754
MluCI AATT 5 cut(s) 187, 438, 451, 683, 829
Mly113I GGCGCC 2 cut(s) 291, 369
MlyI GAGTC 3 cut(s) 319, 666, 726
MmeI TCCRAC 3 cut(s) 594, 666, 864
MreI CGCCGGCG 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 875
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 3 cut(s) 18, 29, 372
MspR9I CCNGG 2 cut(s) 19, 29
MvnI CGCG 2 cut(s) 111, 528
MwoI GCNNNNNNNGC 2 cut(s) 335, 375
NaeI GCCGGC 1 cut(s) 373
NarI GGCGCC 2 cut(s) 291, 369
NciI CCSGG 2 cut(s) 19, 29
NdeI CATATG 1 cut(s) 459
NdeII GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
NgoMIV GCCGGC 1 cut(s) 371
NlaIII CATG 4 cut(s) 39, 242, 865, 880
NlaIV GGNNCC 5 cut(s) 16, 23, 134, 292, 370
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 362
NsbI TGCGCA 1 cut(s) 709
PagI TCATGA 1 cut(s) 876
PceI AGGCCT 2 cut(s) 470, 825
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PdiI GCCGGC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 117, 691
PflFI GACNNNGTC 1 cut(s) 662
Ple19I CGATCG 3 cut(s) 115, 182, 722
PleI GAGTC 3 cut(s) 318, 666, 726
PluTI GGCGCC 2 cut(s) 294, 372
PpsI GAGTC 3 cut(s) 318, 666, 726
Psp124BI GAGCTC 1 cut(s) 624
PspN4I GGNNCC 5 cut(s) 16, 23, 134, 292, 370
PspPI GGNCC 1 cut(s) 42
PsuI RGATCY 3 cut(s) 14, 132, 696
PsyI GACNNNGTC 1 cut(s) 662
PvuI CGATCG 3 cut(s) 115, 182, 722
RseI CAYNNNNRTG 1 cut(s) 875
SacI GAGCTC 1 cut(s) 624
SalI GTCGAC 1 cut(s) 729
SapI GCTCTTC 1 cut(s) 261
Sau3AI GATC 8 cut(s) 14, 112, 132, 179, 649, 696, 719, 741
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 3 cut(s) 319, 666, 726
ScrFI CCNGG 2 cut(s) 19, 29
SduI GDGCHC 6 cut(s) 24, 56, 126, 479, 624, 754
SetI ASST 9 cut(s) 44, 267, 393, 501, 514, 576, 624, 776, 803
SfaNI GCATC 2 cut(s) 37, 238
SfoI GGCGCC 2 cut(s) 292, 370
SgrAI CRCCGGYG 1 cut(s) 371
SinI GGWCC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 875
Sse9I AATT 5 cut(s) 187, 438, 451, 683, 829
SseBI AGGCCT 2 cut(s) 470, 825
SspDI GGCGCC 2 cut(s) 290, 368
SspMI CTAG 3 cut(s) 57, 98, 305
SstI GAGCTC 1 cut(s) 624
StuI AGGCCT 2 cut(s) 470, 825
StyD4I CCNGG 2 cut(s) 17, 27
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 6 cut(s) 115, 545, 578, 718, 722, 730
TasI AATT 5 cut(s) 187, 438, 451, 683, 829
TauI GCSGC 5 cut(s) 92, 95, 159, 332, 378
TfiI GAWTC 2 cut(s) 117, 691
TscAI CASTG 2 cut(s) 561, 607
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 5 cut(s) 106, 153, 251, 404, 771
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 834, 865
TspRI CASTG 2 cut(s) 561, 607
Tth111I GACNNNGTC 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 3 cut(s) 187, 438, 683
XmiI GTMKAC 1 cut(s) 730
XspI CTAG 3 cut(s) 57, 98, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.