RchiOBHm_Chr6g0248821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000377
Physical Location & Seq
Forward (+)
4717916 .. 4718258
343 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22304

Sequence Viewer

Length: 288 bp
ATGTTTATTACAACGTGTTTGGAGTATTGCCGTCTTTGTGTAATCAAAACCGCTACGACATTTCGCCAAAAATTAAATCTCCTTCTCAGTCCCTCCCTCACTCTTATCTTTCTCTCTCCGTCAAAAGATTCGAGAAATCTCAAACCATTACCAGCTCCTCGCCAAAATCAAGTCACTCTCCGTCTCCGAGATCACACCCCCTCAGCTCTCCAGCCTCTCAATTGTCAAATCCGCCTCCACCTCCATCTCCTCCTTCGCCTCCACCTCCGCCTTCGCCTTCGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.12

Weight (kDa)

11.4

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 51, 232, 268
AflIII ACRYGT 1 cut(s) 14
AluBI AGCT 2 cut(s) 155, 206
AluI AGCT 2 cut(s) 155, 206
Alw26I GTCTC 1 cut(s) 188
BbvCI CCTCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 252
BceAI ACGGC 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 202
BseMII CTCAG 2 cut(s) 100, 216
BseRI GAGGAG 2 cut(s) 147, 239
BslFI GGGAC 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 3 cut(s) 51, 232, 268
BspCNI CTCAG 2 cut(s) 99, 215
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 86, 202
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 190
CviJI RGCY 3 cut(s) 155, 206, 214
CviKI_1 RGCY 3 cut(s) 155, 206, 214
DdeI CTNAG 2 cut(s) 86, 202
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EciI GGCGGA 2 cut(s) 221, 257
Esp3I CGTCTC 1 cut(s) 188
FaqI GGGAC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 194
HinfI GANTC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 132
HpyAV CCTTC 4 cut(s) 92, 263, 281, 287
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 86, 202
HpySE526I ACGT 1 cut(s) 14
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 2 cut(s) 165, 224
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MfeI CAATTG 1 cut(s) 220
MluCI AATT 2 cut(s) 71, 220
MseI TTAA 1 cut(s) 74
MunI CAATTG 1 cut(s) 220
NdeII GATC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 74
Sau3AI GATC 1 cut(s) 190
SetI ASST 5 cut(s) 17, 157, 208, 243, 267
SgeI CNNG 7 cut(s) 27, 144, 164, 171, 182, 200, 223
Sse9I AATT 2 cut(s) 71, 220
SsiI CCGC 3 cut(s) 51, 232, 268
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 131, 280
TasI AATT 2 cut(s) 71, 220
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspGWI ACGGA 2 cut(s) 108, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.