Rh4CG451700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000377
Physical Location & Seq
Forward (+)
68522302 .. 68522493
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG451700.1

Sequence Viewer

Length: 192 bp
ATGTCAAAAGCTTCGAGAATTCTCAAACCATTACTAGCTCCTCGGCCACCTCCGCCAAAATCAATTCAATCTACGAGATCATGCTCCCTCAGCTCTCCAACCTCTCGATTGTCAAATCCGCCTCCGCCAGTGTGCCATCCGAGGCGGAGCTCCAGAAGTTCGGCCTCTCCGACGACGATCTCAGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.72

Weight (kDa)

11.89

Isoelectric Point (pI)

124.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 53, 119, 125, 145
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 18
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 4 cut(s) 11, 38, 93, 150
AluI AGCT 4 cut(s) 11, 38, 93, 150
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 2 cut(s) 44, 162
ApoI RAATTY 1 cut(s) 18
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 41, 140
Bse1I ACTGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 41, 140
BseGI GGATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 46, 164
BsiHKAI GWGCWC 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 2 cut(s) 46, 164
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 77, 177
BspACI CCGC 4 cut(s) 53, 119, 125, 145
BspANI GGCC 2 cut(s) 46, 164
BspCNI CTCAG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 41, 140
BssMI GATC 2 cut(s) 77, 177
BstDEI CTNAG 2 cut(s) 89, 181
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 80, 180
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 77, 177
BstMWI GCNNNNNNNGC 2 cut(s) 52, 90
BsuRI GGCC 2 cut(s) 46, 164
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 135
CviAII CATG 1 cut(s) 81
CviJI RGCY 6 cut(s) 11, 38, 46, 93, 150, 164
CviKI_1 RGCY 6 cut(s) 11, 38, 46, 93, 150, 164
DdeI CTNAG 2 cut(s) 89, 181
DpnI GATC 2 cut(s) 79, 179
DpnII GATC 2 cut(s) 77, 177
EaeI YGGCCR 1 cut(s) 44
EciI GGCGGA 4 cut(s) 42, 108, 114, 160
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 1 cut(s) 84
FaiI YATR 1 cut(s) 82
FatI CATG 1 cut(s) 80
FokI GGATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 152
FspBI CTAG 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 2 cut(s) 46, 164
Hin1II CATG 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 141, 171, 184
Hpy188III TCNNGA 3 cut(s) 15, 105, 153
Hpy99I CGWCG 2 cut(s) 175, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 90
HpyF3I CTNAG 2 cut(s) 89, 181
Hsp92II CATG 1 cut(s) 84
Kzo9I GATC 2 cut(s) 77, 177
LmnI GCTCC 4 cut(s) 43, 89, 147, 155
LpnPI CCDG 2 cut(s) 141, 166
MaeI CTAG 1 cut(s) 35
MalI GATC 2 cut(s) 79, 179
MboI GATC 2 cut(s) 77, 177
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 18, 63
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 7 cut(s) 51, 60, 98, 112, 132, 135, 175
MwoI GCNNNNNNNGC 2 cut(s) 52, 90
NdeII GATC 2 cut(s) 77, 177
NlaIII CATG 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 77, 177
SduI GDGCHC 1 cut(s) 152
SetI ASST 6 cut(s) 13, 40, 52, 95, 104, 152
SgeI CNNG 9 cut(s) 27, 47, 54, 87, 93, 117, 140, 153, 165
Sse9I AATT 2 cut(s) 18, 63
SsiI CCGC 4 cut(s) 53, 119, 125, 145
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 152
TaqI TCGA 2 cut(s) 14, 106
TasI AATT 2 cut(s) 18, 63
TscAI CASTG 1 cut(s) 135
TspRI CASTG 1 cut(s) 135
XapI RAATTY 1 cut(s) 18
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.