Rorug07G0066500

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
5051962 .. 5052303
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0066500.1

Sequence Viewer

Length: 255 bp
ATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTGCTGATTTGGCAAAACTAGTTCCTGGCCAAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTGTAAGGAAGGTACTGGCTTTTCTTTGTAACTCAACTTTTTTCCTTTTTCTTTTCAAAGATGATGCTAAAGCATTGGAATTCTATTAG

Protein Analysis

84

Amino Acids

9.35

Weight (kDa)

5.54

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 10 - 59 5.4e-06 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 2 cut(s) 37, 245
AfaI GTAC 1 cut(s) 180
AgsI TTSAA 1 cut(s) 223
AhlI ACTAGT 1 cut(s) 106
AjiI CACGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 112
AoxI GGCC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 37, 245
AspLEI GCGC 1 cut(s) 7
BalI TGGCCA 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 127, 220
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 186
BshFI GGCC 1 cut(s) 117
BsnI GGCC 1 cut(s) 117
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 98, 146
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BsuRI GGCC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 179
CviAII CATG 3 cut(s) 32, 57, 161
CviJI RGCY 3 cut(s) 74, 117, 185
CviKI_1 RGCY 3 cut(s) 74, 117, 185
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 129
EaeI YGGCCR 1 cut(s) 115
EcoRI GAATTC 2 cut(s) 37, 245
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 35, 60, 164
FaiI YATR 4 cut(s) 33, 58, 153, 162
FatI CATG 3 cut(s) 31, 56, 160
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 117
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 35, 60, 164
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 19, 43
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 146
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 3 cut(s) 35, 60, 164
HspAI GCGC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 99, 126, 167
LweI GCATC 2 cut(s) 127, 220
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 3 cut(s) 23, 65, 194
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 4 cut(s) 37, 44, 165, 245
MluNI TGGCCA 1 cut(s) 117
MnlI CCTC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 98, 146
NlaIII CATG 3 cut(s) 35, 60, 164
PfeI GAWTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 114
SetI ASST 3 cut(s) 135, 145, 180
SfaNI GCATC 2 cut(s) 127, 220
SpeI ACTAGT 1 cut(s) 106
Sse9I AATT 4 cut(s) 37, 44, 165, 245
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 112
TaiI ACGT 1 cut(s) 145
TasI AATT 4 cut(s) 37, 44, 165, 245
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
XapI RAATTY 2 cut(s) 37, 245
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.