Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

49303713 .. 49304613

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTTGGACACCACTACCGACGCGGAGGCGCAGCCGGACAAGCACACCACGAGACCTCTGTTTTCCCAAACCCTAGACAATTCGCTCCGAAAGATATGGTTGTCGGTGGGAGTGACACATCCTCCAACACAATTGAGTTTGCAATGGCTGAAATGATGAACAAACCAGTAGTGTTAGAGAAAGCCCAGAAAGAATTAGATGCTGTAGTTGGGAAAGACAGTATCGTACAAGAGTCTCATATTCACAAACTACCATACTTGGAAGCTGTGATGAAAGAAACTCTGCGCTTGCACCCAGCCCTGCCTCTAATGCTCCCACATTGCCCAAGTGAAACATGCATTGTGGGAGGTTATACCATTCCAAAGGGGTCTAAGGTTTTTGTTAATGTGTGGGATATCCACAGAGACCCTTCTAACTGGGAAGACCCATTAGAGTTTAATCCAGAGAGGTTCTTGAATGGTAAATATGACTTCACTGGAAGCAACTTCAACTATTTTCCATTTGGGAGTGGAAAAAGAATATGTCCAGGGACAGCAACGGCAGAGAGGCTTGTCATGCATTTACTTGCATCACTGTTGCATTCTTTTGACTGGAAACTACCACAAGGAGAGACGAAGGTGGATTCTTCCGAAAAGTTTGGGATGGTGATGATGAAGAAGGTACCTATGGTTGCCATCCCAACTCCAAGGTTATTGGATTCAGAGCTTTATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

238

Amino Acids

26.67

Weight (kDa)

6.59

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	32 - 221	1.5e-63	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	661
AccB1I	GGYRCC	1 cut(s)	661
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	228, 663
AgsI	TTSAA	2 cut(s)	457, 490
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	2 cut(s)	266, 706
AluI	AGCT	2 cut(s)	266, 706
Alw26I	GTCTC	4 cut(s)	47, 240, 399, 605
ApeKI	GCWGC	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	661
AspLEI	GCGC	2 cut(s)	32, 288
AsuHPI	GGTGA	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	661
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	637, 683
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	4 cut(s)	47, 240, 399, 605
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	190, 578
BmuI	ACTGGG	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	429
BsaI	GGTCTC	2 cut(s)	47, 399
BsaJI	CCNNGG	2 cut(s)	527, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	4 cut(s)	167, 422, 481, 596
Bse3DI	GCAATG	2 cut(s)	150, 319
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	527, 686
BseGI	GGATG	3 cut(s)	119, 648, 675
BseMI	GCAATG	2 cut(s)	150, 319
BseNI	ACTGG	4 cut(s)	167, 422, 481, 596
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	661
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	544
BsmAI	GTCTC	4 cut(s)	47, 240, 399, 605
BsmBI	CGTCTC	1 cut(s)	605
BsmFI	GGGAC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	580
Bso31I	GGTCTC	2 cut(s)	47, 399
BspACI	CCGC	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	661
BspTNI	GGTCTC	2 cut(s)	47, 399
BsrDI	GCAATG	2 cut(s)	150, 319
BsrI	ACTGG	4 cut(s)	167, 422, 481, 596
BssECI	CCNNGG	2 cut(s)	527, 686
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	221, 576
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	3 cut(s)	119, 648, 675
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	32, 288
BstMAI	GTCTC	4 cut(s)	47, 240, 399, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 310, 556
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	429
BtsCI	GGATG	3 cut(s)	119, 648, 675
BtsIMutI	CAGTG	2 cut(s)	474, 572
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	2 cut(s)	32, 288
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	227, 662
CviAII	CATG	2 cut(s)	336, 556
CviJI	RGCY	7 cut(s)	35, 149, 185, 266, 299, 550, 706
CviKI_1	RGCY	7 cut(s)	35, 149, 185, 266, 299, 550, 706
CviQI	GTAC	2 cut(s)	227, 662
DdeI	CTNAG	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	686
Eco31I	GGTCTC	2 cut(s)	47, 399
Eco32I	GATATC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	686
EcoT22I	ATGCAT	2 cut(s)	341, 561
ErhI	CCWWGG	1 cut(s)	686
Esp3I	CGTCTC	1 cut(s)	605
FaeI	CATG	2 cut(s)	339, 559
FaiI	YATR	9 cut(s)	98, 240, 256, 337, 354, 468, 523, 557, 668
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	2 cut(s)	335, 555
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	106, 655, 662
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	2 cut(s)	31, 287
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	299
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	2 cut(s)	32, 288
Hin1II	CATG	2 cut(s)	339, 559
Hin6I	GCGC	2 cut(s)	30, 286
HinP1I	GCGC	2 cut(s)	30, 286
HinfI	GANTC	3 cut(s)	233, 623, 698
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	658
Hpy188I	TCNGA	3 cut(s)	90, 631, 703
Hpy188III	TCNNGA	2 cut(s)	443, 454
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	3 cut(s)	420, 610, 652
HpyCH4III	ACNGT	2 cut(s)	221, 576
HpyCH4V	TGCA	6 cut(s)	143, 292, 339, 559, 569, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 310, 556
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	339, 559
HspAI	GCGC	2 cut(s)	30, 286
KpnI	GGTACC	1 cut(s)	665
LmnI	GCTCC	2 cut(s)	91, 318
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	2 cut(s)	190, 578
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	113
MboII	GAAGA	3 cut(s)	434, 618, 667
MfeI	CAATTG	1 cut(s)	132
MluCI	AATT	3 cut(s)	80, 132, 194
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	7 cut(s)	20, 67, 133, 315, 341, 441, 540
Mph1103I	ATGCAT	2 cut(s)	341, 561
MseI	TTAA	2 cut(s)	384, 438
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	528
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	41, 310, 556
NlaIII	CATG	2 cut(s)	339, 559
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	2 cut(s)	341, 561
NspI	RCATGY	1 cut(s)	339
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	2 cut(s)	623, 698
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	663
RsaI	GTAC	2 cut(s)	228, 663
RsaNI	GTAC	2 cut(s)	227, 662
SaqAI	TTAA	2 cut(s)	384, 438
SatI	GCNGC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	190, 578
SfcI	CTRYAG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	80, 132, 194
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	686
TaaI	ACNGT	2 cut(s)	221, 576
TasI	AATT	3 cut(s)	80, 132, 194
TfiI	GAWTC	2 cut(s)	623, 698
Tru1I	TTAA	2 cut(s)	384, 438
Tru9I	TTAA	2 cut(s)	384, 438
TscAI	CASTG	2 cut(s)	481, 579
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	173, 287, 668
TspRI	CASTG	2 cut(s)	481, 579
XceI	RCATGY	1 cut(s)	339
XspI	CTAG	1 cut(s)	75
Zsp2I	ATGCAT	2 cut(s)	341, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.