Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014024.1

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

568 .. 1893

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014024.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgaaactgagcactattccaatcaaaattacaagaattgaagctctggaaatggagtcgtaccatgtgggtgcccaggtcgcggatctggaactcatattaggacggccaccggaaaaccttagcgcggcggccatcgtcgcaggtggagtccacggtggagctgcagtcgaagacgtagttgtcgacgggagagaaggcggagagggcgagagagaggtggaagatcaaaaattcgaaggtggaagatccgacgattacatgggtagtcttttaaggcgtgcatgccatgcacgccgtaatttgcacgtcgtaaaagacaaattttctggtagtgttagcaacaccgccttggactcggttcaagaactgcgccacaagcaagtccgaaaagctgtgggttacttctatagtcaggtcgggtcccccgtcgacgttggtgagcaacttttcgtggccattctcaatcttaccaccaacatgttatggggtggcaccatggaggaggagggggtcggggctggggttttggccgagtttagggaagcaatgcgggacatcgcggagctttctgggaaacccaatatttcggaactttatccgggtttggcccggtttgatttgcaggggatagcgaagcagatgaaggatgtggagcttaggtttgataggatttttgagaaagttatcaatcaaaggttgacgatgcagaaagaaggcgcgaaagagagcaatgatttcttgacatttctattgcgatctatagatgaaggaggagacggcaaaactcctctgaccatgacacatctcaaagccatgctcttggtacgttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

278

Amino Acids

30.62

Weight (kDa)

5.4

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	134
AasI	GACNNNNNNGTC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	71, 494
AccI	GTMKAC	2 cut(s)	186, 432
AccII	CGCG	4 cut(s)	83, 128, 563, 722
AciI	CCGC	7 cut(s)	83, 128, 131, 201, 348, 553, 563
AclWI	GGATC	2 cut(s)	93, 243
AcoI	YGGCCR	4 cut(s)	107, 132, 456, 531
AcsI	RAATTY	2 cut(s)	233, 323
AfaI	GTAC	2 cut(s)	62, 828
AfiI	CCNNNNNNNGG	3 cut(s)	82, 127, 540
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	41, 365
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	5 cut(s)	44, 164, 395, 568, 658
AluI	AGCT	5 cut(s)	44, 164, 395, 568, 658
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	771
AlwI	GGATC	2 cut(s)	93, 243
AoxI	GGCC	5 cut(s)	107, 132, 456, 531, 609
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	233, 323
AspLEI	GCGC	3 cut(s)	128, 375, 722
AspS9I	GGNCC	2 cut(s)	423, 610
AsuC2I	CCSGG	2 cut(s)	603, 613
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	71, 494
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	3 cut(s)	122, 282, 796
BciT130I	CCWGG	1 cut(s)	77
BcnI	CCSGG	2 cut(s)	603, 613
BcoDI	GTCTC	1 cut(s)	771
BfmI	CTRYAG	3 cut(s)	165, 409, 762
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	129, 132, 165
BlsI	GCNGC	3 cut(s)	130, 133, 166
Bme1390I	CCNGG	3 cut(s)	77, 603, 613
Bme18I	GGWCC	1 cut(s)	423
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	423, 610
BmiI	GGNNCC	4 cut(s)	73, 424, 425, 496
BmrFI	CCNGG	3 cut(s)	77, 603, 613
BmsI	GCATC	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	2 cut(s)	122, 659
Bpu14I	TTCGAA	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	603, 613
BsaJI	CCNNGG	4 cut(s)	75, 154, 351, 498
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 647, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 127, 540
Bse3DI	GCAATG	2 cut(s)	555, 739
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	4 cut(s)	75, 154, 351, 498
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	3 cut(s)	82, 127, 540
BseMI	GCAATG	2 cut(s)	555, 739
BseRI	GAGGAG	4 cut(s)	518, 521, 780, 789
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	521
Bsh1236I	CGCG	4 cut(s)	83, 128, 563, 722
BshFI	GGCC	5 cut(s)	109, 134, 458, 533, 611
BshNI	GGYRCC	2 cut(s)	71, 494
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	113, 602, 613
BslFI	GGGAC	2 cut(s)	409, 569
BslI	CCNNNNNNNGG	3 cut(s)	82, 127, 540
BsmAI	GTCTC	1 cut(s)	771
BsmBI	CGTCTC	1 cut(s)	771
BsmFI	GGGAC	2 cut(s)	409, 569
BsnI	GGCC	5 cut(s)	109, 134, 458, 533, 611
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	14, 76
Bsp143I	GATC	4 cut(s)	85, 226, 248, 758
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	7 cut(s)	83, 128, 131, 201, 348, 553, 563
BspANI	GGCC	5 cut(s)	109, 134, 458, 533, 611
BspFNI	CGCG	4 cut(s)	83, 128, 563, 722
BspLI	GGNNCC	4 cut(s)	73, 424, 425, 496
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	93, 243
BspT104I	TTCGAA	1 cut(s)	237
BspT107I	GGYRCC	2 cut(s)	71, 494
BsrDI	GCAATG	2 cut(s)	555, 739
BssECI	CCNNGG	4 cut(s)	75, 154, 351, 498
BssMI	GATC	4 cut(s)	85, 226, 248, 758
BssT1I	CCWWGG	2 cut(s)	351, 498
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	282, 286, 295
BstDEI	CTNAG	3 cut(s)	8, 122, 659
BstDSI	CCRYGG	2 cut(s)	154, 498
BstF5I	GGATG	1 cut(s)	655
BstFNI	CGCG	4 cut(s)	83, 128, 563, 722
BstHHI	GCGC	3 cut(s)	128, 375, 722
BstKTI	GATC	4 cut(s)	88, 229, 251, 761
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	4 cut(s)	85, 226, 248, 758
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 140, 207, 290, 294, 379
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	288, 484
BstSCI	CCNGG	3 cut(s)	75, 601, 611
BstSFI	CTRYAG	3 cut(s)	165, 409, 762
BstSLI	GKGCMC	1 cut(s)	76
BstUI	CGCG	4 cut(s)	83, 128, 563, 722
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	85, 248
BstXI	CCANNNNNNTGG	1 cut(s)	823
BstYI	RGATCY	2 cut(s)	85, 248
BsuRI	GGCC	5 cut(s)	109, 134, 458, 533, 611
BtgI	CCRYGG	2 cut(s)	154, 498
BtgZI	GCGATG	1 cut(s)	544
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	655
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	3 cut(s)	282, 286, 295
CfoI	GCGC	3 cut(s)	128, 375, 722
Cfr13I	GGNCC	2 cut(s)	423, 610
Csp6I	GTAC	2 cut(s)	61, 827
CviAII	CATG	8 cut(s)	65, 262, 285, 290, 481, 499, 799, 817
CviQI	GTAC	2 cut(s)	61, 827
DdeI	CTNAG	3 cut(s)	8, 122, 659
DpnI	GATC	4 cut(s)	87, 228, 250, 760
DpnII	GATC	4 cut(s)	85, 226, 248, 758
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	4 cut(s)	107, 132, 456, 531
EciI	GGCGGA	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	351, 498
Eco47I	GGWCC	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	351, 498
ErhI	CCWWGG	2 cut(s)	351, 498
Esp3I	CGTCTC	1 cut(s)	771
FaeI	CATG	8 cut(s)	68, 265, 288, 293, 484, 502, 802, 820
FaqI	GGGAC	2 cut(s)	409, 569
FatI	CATG	8 cut(s)	64, 261, 284, 289, 480, 498, 798, 816
FauI	CCCGC	1 cut(s)	546
FblI	GTMKAC	2 cut(s)	186, 432
Fnu4HI	GCNGC	3 cut(s)	129, 132, 165
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	3 cut(s)	129, 132, 165
GlaI	GCGC	3 cut(s)	127, 374, 721
GluI	GCNGC	3 cut(s)	129, 132, 165
GsaI	CCCAGC	1 cut(s)	525
HaeIII	GGCC	5 cut(s)	109, 134, 458, 533, 611
HapII	CCGG	3 cut(s)	113, 602, 613
HhaI	GCGC	3 cut(s)	128, 375, 722
Hin1II	CATG	8 cut(s)	68, 265, 288, 293, 484, 502, 802, 820
Hin6I	GCGC	3 cut(s)	126, 373, 720
HinP1I	GCGC	3 cut(s)	126, 373, 720
HincII	GTYRAC	3 cut(s)	187, 433, 702
HindII	GTYRAC	3 cut(s)	187, 433, 702
HinfI	GANTC	3 cut(s)	56, 150, 356
HpaII	CCGG	3 cut(s)	113, 602, 613
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	4 cut(s)	154, 187, 433, 702
Hpy188I	TCNGA	4 cut(s)	253, 389, 592, 795
Hpy188III	TCNNGA	4 cut(s)	47, 89, 365, 742
Hpy8I	GTNNAC	4 cut(s)	154, 187, 433, 702
Hpy99I	CGWCG	6 cut(s)	143, 191, 257, 314, 434, 437
HpyAV	CCTTC	5 cut(s)	191, 233, 640, 710, 764
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	4 cut(s)	177, 309, 435, 829
HpyCH4V	TGCA	6 cut(s)	167, 284, 293, 307, 625, 709
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 140, 207, 290, 294, 379
HpyF3I	CTNAG	3 cut(s)	8, 122, 659
HpySE526I	ACGT	4 cut(s)	177, 309, 435, 829
Hsp92II	CATG	8 cut(s)	68, 265, 288, 293, 484, 502, 802, 820
HspAI	GCGC	3 cut(s)	126, 373, 720
KflI	GGGWCCC	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	85, 226, 248, 758
LmnI	GCTCC	3 cut(s)	161, 565, 655
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	696
MaeII	ACGT	4 cut(s)	177, 309, 435, 829
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	4 cut(s)	87, 228, 250, 760
MboI	GATC	4 cut(s)	85, 226, 248, 758
MboII	GAAGA	3 cut(s)	185, 236, 258
MflI	RGATCY	2 cut(s)	85, 248
MhlI	GDGCHC	2 cut(s)	14, 76
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	5 cut(s)	27, 36, 233, 301, 323
MluNI	TGGCCA	1 cut(s)	458
MlyI	GAGTC	3 cut(s)	65, 159, 350
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	7 cut(s)	199, 211, 496, 499, 502, 767, 801
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	2 cut(s)	275, 835
MslI	CAYNNNNRTG	2 cut(s)	69, 479
Msp20I	TGGCCA	1 cut(s)	458
MspI	CCGG	3 cut(s)	113, 602, 613
MspR9I	CCNGG	3 cut(s)	77, 603, 613
MvaI	CCWGG	1 cut(s)	77
MvnI	CGCG	4 cut(s)	83, 128, 563, 722
MwoI	GCNNNNNNNGC	6 cut(s)	80, 140, 207, 290, 294, 379
NciI	CCSGG	2 cut(s)	603, 613
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	4 cut(s)	85, 226, 248, 758
NlaIII	CATG	8 cut(s)	68, 265, 288, 293, 484, 502, 802, 820
NlaIV	GGNNCC	4 cut(s)	73, 424, 425, 496
NmeAIII	GCCGAG	1 cut(s)	559
NspI	RCATGY	2 cut(s)	288, 484
NspV	TTCGAA	1 cut(s)	237
PaeI	GCATGC	1 cut(s)	288
PaqCI	CACCTGC	1 cut(s)	134
PciI	ACATGT	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 426
PkrI	GCNGC	3 cut(s)	130, 133, 166
PleI	GAGTC	3 cut(s)	64, 158, 350
PpsI	GAGTC	3 cut(s)	64, 158, 350
PpuMI	RGGWCCY	1 cut(s)	423
PscI	ACATGT	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	4 cut(s)	73, 424, 425, 496
PspPI	GGNCC	2 cut(s)	423, 610
PspPPI	RGGWCCY	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	85, 248
RsaI	GTAC	2 cut(s)	62, 828
RsaNI	GTAC	2 cut(s)	61, 827
RseI	CAYNNNNRTG	2 cut(s)	69, 479
SalI	GTCGAC	2 cut(s)	185, 431
SaqAI	TTAA	2 cut(s)	275, 835
SatI	GCNGC	3 cut(s)	129, 132, 165
Sau3AI	GATC	4 cut(s)	85, 226, 248, 758
Sau96I	GGNCC	2 cut(s)	423, 610
SchI	GAGTC	3 cut(s)	65, 159, 350
ScrFI	CCNGG	3 cut(s)	77, 603, 613
SduI	GDGCHC	2 cut(s)	14, 76
SfaNI	GCATC	1 cut(s)	696
SfcI	CTRYAG	3 cut(s)	165, 409, 762
SfuI	TTCGAA	1 cut(s)	237
SgrDI	CGTCGACG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	69, 479
SphI	GCATGC	1 cut(s)	288
Sse9I	AATT	5 cut(s)	27, 36, 233, 301, 323
SsiI	CCGC	7 cut(s)	83, 128, 131, 201, 348, 553, 563
SspI	AATATT	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	75, 601, 611
StyI	CCWWGG	2 cut(s)	351, 498
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	4 cut(s)	180, 312, 438, 832
TaqI	TCGA	4 cut(s)	171, 186, 237, 432
TasI	AATT	5 cut(s)	27, 36, 233, 301, 323
TauI	GCSGC	2 cut(s)	131, 134
Tru1I	TTAA	2 cut(s)	275, 835
Tru9I	TTAA	2 cut(s)	275, 835
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	17, 659, 783
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	2 cut(s)	233, 323
XceI	RCATGY	2 cut(s)	288, 484
XmiI	GTMKAC	2 cut(s)	186, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.