Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012276.1

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

41543 .. 43423

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012276.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgctgtggggcgggacggtgcaggacgaggcctccggtctcggggcggagttccggcaagtggtatcggaggggacggagctactggcgaagccgaacttaaaagaggagggagattccaagacgccgtttactatgactcacctcaaagccttgtttatggatatggttgtgggcgggacgtacacatcctccaacacaattgaatttgcaatgtcggaagttatgaacaaaccagaagtgttacaaaaagtccagaaagaactagaagcagtagttggcaaaaacagcgttgtagaagagtctcacattcacaagctaccgtacttatatgctgtgatgaaagaaacactgcgcttgcacccagtcctgcctctattagtcccacattgcccaagtgagacatgcactgtgggcggctataccattccaaaggggtctaggatttttgttaatgtttgggctatacatagagacccttctagttgggaaaacccattggagtttgatccaactagattcttggatagtaaatgggattacagtgggagtgacttcaagtattttccttttgggtctgggagaagaatatgtgcaggtatagcattggctgacagaatggtgatgcattcgcttgctacactgctgcattcttttgattggaaactgccacggggagagaagttggatctttcggagaagtttggtattgtattgaagaagaagatatctttggttgccatcccaactccaaggttatcagatccagcactctatgatagccgacaaggtgctttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

266

Amino Acids

29.71

Weight (kDa)

6.46

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	587
AciI	CCGC	4 cut(s)	12, 47, 177, 417
AclWI	GGATC	3 cut(s)	503, 696, 758
AcsI	RAATTY	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	2 cut(s)	185, 326
AfiI	CCNNNNNNNGG	2 cut(s)	42, 61
AgsI	TTSAA	3 cut(s)	206, 559, 718
AjuI	GAANNNNNNNTTGG	4 cut(s)	261, 293, 716, 748
AluBI	AGCT	2 cut(s)	82, 319
AluI	AGCT	2 cut(s)	82, 319
Alw26I	GTCTC	4 cut(s)	44, 309, 395, 468
AlwI	GGATC	3 cut(s)	503, 696, 758
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	646
ApoI	RAATTY	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	134, 634
AvaI	CYCGRG	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	633
BccI	CCATC	1 cut(s)	749
BceAI	ACGGC	1 cut(s)	112
BcoDI	GTCTC	4 cut(s)	44, 309, 395, 468
BfaI	CTAG	4 cut(s)	266, 441, 483, 516
BfuAI	ACCTGC	1 cut(s)	587
BisI	GCNGC	2 cut(s)	418, 647
BlsI	GCNGC	2 cut(s)	419, 648
BmeT110I	CYCGRG	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	2 cut(s)	44, 468
BsaJI	CCNNGG	2 cut(s)	671, 752
BsaWI	WCCGGW	1 cut(s)	35
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 61
Bse1I	ACTGG	2 cut(s)	90, 365
Bse3DI	GCAATG	2 cut(s)	219, 388
BseDI	CCNNGG	2 cut(s)	671, 752
BseGI	GGATG	2 cut(s)	188, 741
BseLI	CCNNNNNNNGG	2 cut(s)	42, 61
BseMI	GCAATG	2 cut(s)	219, 388
BseNI	ACTGG	2 cut(s)	90, 365
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	633
BsgI	GTGCAG	2 cut(s)	41, 615
BshFI	GGCC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	36, 55
BslFI	GGGAC	4 cut(s)	28, 88, 193, 368
BslI	CCNNNNNNNGG	2 cut(s)	42, 61
BsmAI	GTCTC	4 cut(s)	44, 309, 395, 468
BsmFI	GGGAC	4 cut(s)	28, 88, 193, 368
BsmI	GAATGC	2 cut(s)	628, 649
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	2 cut(s)	44, 468
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	508, 688, 763
BspACI	CCGC	4 cut(s)	12, 47, 177, 417
BspANI	GGCC	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	3 cut(s)	503, 696, 758
BspTNI	GGTCTC	2 cut(s)	44, 468
BsrDI	GCAATG	2 cut(s)	219, 388
BsrI	ACTGG	2 cut(s)	90, 365
BssECI	CCNNGG	2 cut(s)	671, 752
BssMI	GATC	3 cut(s)	508, 688, 763
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	752
Bst4CI	ACNGT	4 cut(s)	19, 324, 412, 545
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	359, 636
BstDSI	CCRYGG	1 cut(s)	671
BstF5I	GGATG	2 cut(s)	188, 741
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	3 cut(s)	511, 691, 766
BstMAI	GTCTC	4 cut(s)	44, 309, 395, 468
BstMBI	GATC	3 cut(s)	508, 688, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 414, 602
BstNSI	RCATGY	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	633
BstX2I	RGATCY	2 cut(s)	688, 763
BstYI	RGATCY	2 cut(s)	688, 763
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	671
BtsCI	GGATG	2 cut(s)	188, 741
BtsI	GCAGTG	2 cut(s)	350, 641
BtsIMutI	CAGTG	4 cut(s)	350, 408, 550, 641
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	359, 636
CfoI	GCGC	1 cut(s)	357
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	184, 325
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	9 cut(s)	32, 82, 94, 152, 319, 420, 464, 611, 783
CviKI_1	RGCY	9 cut(s)	32, 82, 94, 152, 319, 420, 464, 611, 783
CviQI	GTAC	2 cut(s)	184, 325
DpnI	GATC	3 cut(s)	510, 690, 765
DpnII	GATC	3 cut(s)	508, 688, 763
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	752
Eco147I	AGGCCT	1 cut(s)	32
Eco31I	GGTCTC	2 cut(s)	44, 468
Eco32I	GATATC	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	752
EcoT22I	ATGCAT	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	1 cut(s)	408
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	4 cut(s)	28, 88, 193, 368
FatI	CATG	1 cut(s)	404
FauI	CCCGC	2 cut(s)	5, 170
Fnu4HI	GCNGC	2 cut(s)	418, 647
FokI	GGATG	2 cut(s)	175, 728
Fsp4HI	GCNGC	2 cut(s)	418, 647
FspBI	CTAG	4 cut(s)	266, 441, 483, 516
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	418, 647
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	2 cut(s)	36, 55
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	4 cut(s)	116, 139, 302, 519
HpaII	CCGG	2 cut(s)	36, 55
HphI	GGTGA	2 cut(s)	134, 634
Hpy166II	GTNNAC	2 cut(s)	132, 186
Hpy188I	TCNGA	4 cut(s)	70, 220, 697, 763
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	132, 186
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	4 cut(s)	19, 324, 412, 545
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	7 cut(s)	22, 212, 361, 408, 596, 628, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 414, 602
HpySE526I	ACGT	1 cut(s)	182
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	508, 688, 763
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	1 cut(s)	633
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	4 cut(s)	266, 441, 483, 516
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	243, 551
MalI	GATC	3 cut(s)	510, 690, 765
MboI	GATC	3 cut(s)	508, 688, 763
MboII	GAAGA	5 cut(s)	311, 597, 730, 733, 736
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	2 cut(s)	688, 763
MluCI	AATT	2 cut(s)	201, 206
MlyI	GAGTC	2 cut(s)	133, 311
MmeI	TCCRAC	4 cut(s)	198, 219, 536, 666
MnlI	CCTC	8 cut(s)	22, 43, 64, 100, 103, 155, 202, 384
Mph1103I	ATGCAT	1 cut(s)	630
MseI	TTAA	2 cut(s)	101, 453
MspI	CCGG	2 cut(s)	36, 55
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	2 cut(s)	628, 649
MwoI	GCNNNNNNNGC	3 cut(s)	288, 414, 602
NdeII	GATC	3 cut(s)	508, 688, 763
NlaIII	CATG	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	630
NspI	RCATGY	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	32
PctI	GAATGC	2 cut(s)	628, 649
PfeI	GAWTC	2 cut(s)	116, 519
PkrI	GCNGC	2 cut(s)	419, 648
PleI	GAGTC	2 cut(s)	133, 310
PpsI	GAGTC	2 cut(s)	133, 310
PsuI	RGATCY	2 cut(s)	688, 763
RsaI	GTAC	2 cut(s)	185, 326
RsaNI	GTAC	2 cut(s)	184, 325
SaqAI	TTAA	2 cut(s)	101, 453
SatI	GCNGC	2 cut(s)	418, 647
Sau3AI	GATC	3 cut(s)	508, 688, 763
SchI	GAGTC	2 cut(s)	133, 311
SetI	ASST	7 cut(s)	84, 147, 185, 321, 601, 758, 793
SfaNI	GCATC	1 cut(s)	615
Sse9I	AATT	2 cut(s)	201, 206
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	4 cut(s)	12, 47, 177, 417
SspMI	CTAG	4 cut(s)	266, 441, 483, 516
StuI	AGGCCT	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	4 cut(s)	19, 324, 412, 545
TaiI	ACGT	1 cut(s)	185
TasI	AATT	2 cut(s)	201, 206
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	116, 519
Tru1I	TTAA	2 cut(s)	101, 453
Tru9I	TTAA	2 cut(s)	101, 453
TscAI	CASTG	4 cut(s)	357, 415, 550, 648
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	646
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	2 cut(s)	242, 356
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	4 cut(s)	357, 415, 550, 648
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	408
XspI	CTAG	4 cut(s)	266, 441, 483, 516
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.