Rroxscaffold_2G00077750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000377
Physical Location & Seq
Forward (+)
1245983 .. 1248359
2377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077750.1

Sequence Viewer

Length: 396 bp
ATGGCTCGAGGCGCTTCTACTATGCTCGGTTTTGTGGTCGGAGATGGCCGAAATTGGAAGAAATCAACGATTGAAGCCGACTGCTACAGTAAATGTTGGAAGCCCGATTTGCGAAATTCCGGCCAAATCGTTGTGAATCACTACCATAGGCGTGTCAAGAGGGAGGAGGAGCGTCGTTCTATGCCCCGGGTTCGTTGTTTGGGTGGCGGAAGGAGGAGATTGGCCGGAAATCAAAGGGAGGCCGAAGGGAAGAGAGAGCTCGGGGAAGAAGAAGAAGAAGAGAGACAAATATCTATGGAAAAACCCGATGATTCAACGATTGAATGGAATGGAATAAACTGTAGCAGTCTAGCTTCGCTGGCTAAGGCATTTGTATATAACTCACGAGTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.02

Weight (kDa)

9.0

Isoelectric Point (pI)

69.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AcoI YGGCCR 3 cut(s) 46, 121, 222
AcsI RAATTY 1 cut(s) 115
AgsI TTSAA 3 cut(s) 74, 315, 323
AluBI AGCT 2 cut(s) 259, 353
AluI AGCT 2 cut(s) 259, 353
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 277
Ama87I CYCGRG 3 cut(s) 6, 186, 260
AoxI GGCC 4 cut(s) 46, 121, 222, 240
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 187, 188
AvaI CYCGRG 3 cut(s) 6, 186, 260
BanII GRGCYC 1 cut(s) 261
BauI CACGAG 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 261
BccI CCATC 1 cut(s) 38
BcnI CCSGG 2 cut(s) 187, 188
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 2 cut(s) 85, 340
BfoI RGCGCY 1 cut(s) 15
Bme1390I CCNGG 2 cut(s) 187, 188
BmeT110I CYCGRG 3 cut(s) 6, 186, 260
BmrFI CCNGG 2 cut(s) 187, 188
Bpu10I CCTNAGC 1 cut(s) 363
BpuMI CCSGG 2 cut(s) 187, 188
BsaJI CCNNGG 2 cut(s) 185, 186
BseDI CCNNGG 2 cut(s) 185, 186
BseRI GAGGAG 3 cut(s) 179, 182, 229
BshFI GGCC 4 cut(s) 48, 123, 224, 242
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 3 cut(s) 6, 186, 260
BsiSI CCGG 3 cut(s) 120, 187, 225
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 4 cut(s) 48, 123, 224, 242
BsoBI CYCGRG 3 cut(s) 6, 186, 260
Bsp1286I GDGCHC 1 cut(s) 261
BspACI CCGC 1 cut(s) 207
BspANI GGCC 4 cut(s) 48, 123, 224, 242
BssECI CCNNGG 2 cut(s) 185, 186
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 89, 341
Bst6I CTCTTC 2 cut(s) 245, 273
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 11, 109, 359
BstSCI CCNGG 2 cut(s) 185, 186
BstSFI CTRYAG 2 cut(s) 85, 340
BsuRI GGCC 4 cut(s) 48, 123, 224, 242
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 1 cut(s) 14
Cfr9I CCCGGG 1 cut(s) 186
CseI GACGC 1 cut(s) 161
DdeI CTNAG 1 cut(s) 363
EaeI YGGCCR 3 cut(s) 46, 121, 222
Eam1104I CTCTTC 2 cut(s) 245, 273
EarI CTCTTC 2 cut(s) 245, 273
EciI GGCGGA 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
Eco88I CYCGRG 3 cut(s) 6, 186, 260
EcoICRI GAGCTC 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 261
FaiI YATR 6 cut(s) 23, 147, 182, 296, 376, 378
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 13
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 4 cut(s) 48, 123, 224, 242
HapII CCGG 3 cut(s) 120, 187, 225
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 2 cut(s) 136, 311
HpaII CCGG 3 cut(s) 120, 187, 225
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 2 cut(s) 157, 384
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 204, 239
HpyCH4III ACNGT 2 cut(s) 89, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 109, 359
HpyF3I CTNAG 1 cut(s) 363
HspAI GCGC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 133, 200, 238, 344
MaeI CTAG 1 cut(s) 350
MboII GAAGA 7 cut(s) 70, 262, 278, 281, 284, 287, 290
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 2 cut(s) 52, 115
MmeI TCCRAC 2 cut(s) 19, 77
MnlI CCTC 5 cut(s) 153, 157, 160, 207, 232
MseI TTAA 1 cut(s) 394
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 3 cut(s) 120, 187, 225
MspR9I CCNGG 2 cut(s) 187, 188
MwoI GCNNNNNNNGC 3 cut(s) 11, 109, 359
NciI CCSGG 2 cut(s) 187, 188
PaeR7I CTCGAG 1 cut(s) 6
PfeI GAWTC 2 cut(s) 136, 311
Psp124BI GAGCTC 1 cut(s) 261
PspXI VCTCGAGB 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 187, 188
SduI GDGCHC 1 cut(s) 261
SetI ASST 2 cut(s) 261, 355
SfcI CTRYAG 2 cut(s) 85, 340
Sfr274I CTCGAG 1 cut(s) 6
SlaI CTCGAG 1 cut(s) 6
SmaI CCCGGG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 2 cut(s) 52, 115
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 185, 186
TaaI ACNGT 2 cut(s) 89, 341
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 52, 115
TfiI GAWTC 2 cut(s) 136, 311
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TspMI CCCGGG 1 cut(s) 186
XapI RAATTY 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 6
XmaI CCCGGG 1 cut(s) 186
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.