Rroxscaffold_5G00357810

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000377
Physical Location & Seq
Reverse (-)
37702891 .. 37713271
10381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357810.1

Sequence Viewer

Length: 492 bp
ATGGCACCCAAAGCCAAAACTGTTGACCTCAAGTGCCGACACCGAGCACGGCGTGAAAAACCGCGATCGAAGCTAGGCTTCGAGAATTCTCAAGCCTCTCCAGATACTAGCTCCTCCGCCTCCGCCAAAATCAAGTCAATCTTCATCTCCGAGATCATACTCCCTCAGCTCTCCAACCTCTCGATTGTCAAATCCGCCTCCGCCAGTGTCCCATCGGAGGCGGAGCTCCAGAAGTTCGGCCTCTCCGACGATTCCAGAGACTTCGTCAAGGGACTCACTTCCGAATTTTTGATTCGAATCTTCAAATGCGAACCATTTCGATCGACTAGTCGACTCTCTTTAATCCTTCCTGCTCTGCACTTCGCTCCTCTTAGCTCAGTTCGTTGGTTAAGTTGTGATGCTTTTGTGAATCTCATCACAACTGAGATTCACGAGGTCTATCCTTTTATTCCTGTTACTGTTCCCTTTTTCTTTACAGGTTTGTCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

163

Amino Acids

18.12

Weight (kDa)

9.3

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 331
AccII CGCG 1 cut(s) 64
AciI CCGC 6 cut(s) 62, 117, 123, 195, 201, 221
AcsI RAATTY 2 cut(s) 85, 284
AdeI CACNNNGTG 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 304
AhlI ACTAGT 1 cut(s) 326
AluBI AGCT 5 cut(s) 73, 111, 169, 226, 375
AluI AGCT 5 cut(s) 73, 111, 169, 226, 375
Alw21I GWGCWC 2 cut(s) 49, 228
Alw26I GTCTC 1 cut(s) 252
AoxI GGCC 1 cut(s) 238
ApoI RAATTY 2 cut(s) 85, 284
Asp700I GAANNNNTTC 1 cut(s) 315
AsuII TTCGAA 1 cut(s) 295
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 228
BauI CACGAG 1 cut(s) 431
Bbv12I GWGCWC 2 cut(s) 49, 228
BbvCI CCTCAGC 1 cut(s) 165
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 252
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 3 cut(s) 74, 108, 327
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 388
BpmI CTGGAG 2 cut(s) 84, 212
Bpu10I CCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 295
BpuEI CTTGAG 2 cut(s) 14, 75
BsaBI GATNNNNATC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 296
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 4 cut(s) 179, 390, 414, 477
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 103, 357
BsgI GTGCAG 1 cut(s) 341
Bsh1236I CGCG 1 cut(s) 64
Bsh1285I CGRYCG 2 cut(s) 68, 323
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 2 cut(s) 68, 323
BsiHKAI GWGCWC 2 cut(s) 49, 228
BslFI GGGAC 2 cut(s) 194, 285
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 2 cut(s) 194, 285
BsnI GGCC 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 49, 228
Bsp143I GATC 3 cut(s) 65, 153, 320
BspACI CCGC 6 cut(s) 62, 117, 123, 195, 201, 221
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 4 cut(s) 178, 389, 415, 478
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 204
BssMI GATC 3 cut(s) 65, 153, 320
BssSI CACGAG 1 cut(s) 431
Bst2BI CACGAG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 22, 460
BstBI TTCGAA 1 cut(s) 295
BstDEI CTNAG 5 cut(s) 165, 371, 376, 423, 486
BstFNI CGCG 1 cut(s) 64
BstKTI GATC 3 cut(s) 68, 156, 323
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 3 cut(s) 65, 153, 320
BstMCI CGRYCG 2 cut(s) 68, 323
BstMWI GCNNNNNNNGC 2 cut(s) 11, 70
BstUI CGCG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 211
CviJI RGCY 9 cut(s) 14, 73, 78, 95, 111, 169, 226, 240, 375
CviKI_1 RGCY 9 cut(s) 14, 73, 78, 95, 111, 169, 226, 240, 375
DdeI CTNAG 5 cut(s) 165, 371, 376, 423, 486
DpnI GATC 3 cut(s) 67, 155, 322
DpnII GATC 3 cut(s) 65, 153, 320
DraIII CACNNNGTG 1 cut(s) 53
EciI GGCGGA 5 cut(s) 106, 112, 184, 190, 236
Ecl136II GAGCTC 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 228
FaiI YATR 1 cut(s) 158
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 125, 157
FaqI GGGAC 2 cut(s) 194, 285
FblI GTMKAC 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 3 cut(s) 74, 108, 327
GsuI CTGGAG 2 cut(s) 84, 212
HaeIII GGCC 1 cut(s) 240
HincII GTYRAC 2 cut(s) 25, 332
HindII GTYRAC 2 cut(s) 25, 332
HinfI GANTC 7 cut(s) 251, 273, 292, 297, 333, 409, 427
Hpy166II GTNNAC 2 cut(s) 25, 332
Hpy188I TCNGA 5 cut(s) 151, 217, 247, 283, 487
Hpy188III TCNNGA 6 cut(s) 82, 101, 181, 229, 255, 431
Hpy8I GTNNAC 2 cut(s) 25, 332
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 2 cut(s) 22, 460
HpyCH4V TGCA 1 cut(s) 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 70
HpyF3I CTNAG 5 cut(s) 165, 371, 376, 423, 486
Kzo9I GATC 3 cut(s) 65, 153, 320
LmnI GCTCC 4 cut(s) 116, 223, 231, 370
LpnPI CCDG 7 cut(s) 114, 217, 242, 268, 363, 462, 465
LweI GCATC 1 cut(s) 388
MaeI CTAG 3 cut(s) 74, 108, 327
MaeIII GTNAC 1 cut(s) 454
MalI GATC 3 cut(s) 67, 155, 322
MboI GATC 3 cut(s) 65, 153, 320
MboII GAAGA 2 cut(s) 133, 292
MhlI GDGCHC 2 cut(s) 49, 228
MluCI AATT 2 cut(s) 85, 284
MlyI GAGTC 2 cut(s) 267, 327
MmeI TCCRAC 2 cut(s) 198, 270
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 2 cut(s) 341, 389
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 11, 70
NdeII GATC 3 cut(s) 65, 153, 320
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 5 cut(s) 251, 292, 297, 409, 427
PflFI GACNNNGTC 1 cut(s) 263
Ple19I CGATCG 2 cut(s) 68, 323
PleI GAGTC 2 cut(s) 267, 327
PpsI GAGTC 2 cut(s) 267, 327
Psp124BI GAGCTC 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 263
PvuI CGATCG 2 cut(s) 68, 323
SacI GAGCTC 1 cut(s) 228
SalI GTCGAC 1 cut(s) 330
SaqAI TTAA 2 cut(s) 341, 389
Sau3AI GATC 3 cut(s) 65, 153, 320
SchI GAGTC 2 cut(s) 267, 327
SduI GDGCHC 2 cut(s) 49, 228
SetI ASST 9 cut(s) 30, 75, 113, 171, 180, 228, 377, 438, 481
SfaNI GCATC 1 cut(s) 388
SfuI TTCGAA 1 cut(s) 295
SmlI CTYRAG 2 cut(s) 29, 90
SmoI CTYRAG 2 cut(s) 29, 90
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 2 cut(s) 85, 284
SsiI CCGC 6 cut(s) 62, 117, 123, 195, 201, 221
SspMI CTAG 3 cut(s) 74, 108, 327
SstI GAGCTC 1 cut(s) 228
TaaI ACNGT 2 cut(s) 22, 460
TaqI TCGA 7 cut(s) 68, 81, 182, 295, 319, 323, 331
TasI AATT 2 cut(s) 85, 284
TfiI GAWTC 5 cut(s) 251, 292, 297, 409, 427
Tru1I TTAA 2 cut(s) 341, 389
Tru9I TTAA 2 cut(s) 341, 389
TscAI CASTG 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 133
TspRI CASTG 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 263
XapI RAATTY 2 cut(s) 85, 284
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 3 cut(s) 74, 108, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.