Rh5BG064200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000377
Physical Location & Seq
Forward (+)
5324721 .. 5327465
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG064200.1

Sequence Viewer

Length: 495 bp
ATGTGCGCCGTGAAACTTGCATTTTTAAATAATAAAGCAAAGCGTACAGTGAAAGCATGCCGTGTTTGTTATTGTGCAAATGTTTATAACGACGCGTTTGGAGTATTGCCGTCTTTGTGTAATCAAAACAGCTACGAAATTTGGCCAAAATTAAAGTTAAATCTCCTTCTCAGTCCATCCCTCACTCTTATCTTTCTCTCTCCGTCGAAAGCTTCGAGAAATCTCAAACCATTACCAGCTCCTCCGCCAAAATCAAGTCACTCTCTGTCTCCGAGATCACACCCCCTCAGCTCTCCAACCTCTCAATTGTCAAATCCGCCTCCACCTTCTCCTTCGCCTCCGCCTTCGCCAGTGAGCCATCGGAGGCGGAGCTCCATAAGTTCGGTGTCTCCGACGATATCAGAGCCTTTGTCAAGGGACTCACTTCCGAATTTTTTGATTCGGTTCTTCAAATGCGCACCGTTTCGATCGAATAGTCGACTCTCTAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.96

Weight (kDa)

10.5

Isoelectric Point (pI)

84.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
Acc16I TGCGCA 1 cut(s) 457
AccI GTMKAC 1 cut(s) 478
AccII CGCG 1 cut(s) 95
AciI CCGC 4 cut(s) 245, 317, 341, 367
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 138, 430
AfaI GTAC 1 cut(s) 46
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 1 cut(s) 451
AluBI AGCT 5 cut(s) 132, 212, 239, 291, 372
AluI AGCT 5 cut(s) 132, 212, 239, 291, 372
Alw21I GWGCWC 1 cut(s) 374
Alw26I GTCTC 2 cut(s) 273, 393
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 138, 430
AspLEI GCGC 2 cut(s) 8, 458
BalI TGGCCA 1 cut(s) 145
BanII GRGCYC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 184, 366
BceAI ACGGC 2 cut(s) 45, 94
BcoDI GTCTC 2 cut(s) 273, 393
Bpu10I CCTNAGC 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 184, 301
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 470
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 374
BslFI GGGAC 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 273, 393
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 2 cut(s) 275, 467
BspACI CCGC 4 cut(s) 245, 317, 341, 367
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 183, 300
BspFNI CGCG 1 cut(s) 95
BsrI ACTGG 1 cut(s) 350
BssMI GATC 2 cut(s) 275, 467
Bst4CI ACNGT 2 cut(s) 49, 462
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 170, 287
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 2 cut(s) 8, 458
BstKTI GATC 2 cut(s) 278, 470
BstMAI GTCTC 2 cut(s) 273, 393
BstMBI GATC 2 cut(s) 275, 467
BstMCI CGRYCG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 60
BstUI CGCG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 176
BtsIMutI CAGTG 2 cut(s) 54, 357
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 2 cut(s) 8, 458
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 45
CviAII CATG 1 cut(s) 57
CviJI RGCY 8 cut(s) 132, 145, 212, 239, 291, 357, 372, 406
CviKI_1 RGCY 8 cut(s) 132, 145, 212, 239, 291, 357, 372, 406
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 2 cut(s) 170, 287
DpnI GATC 2 cut(s) 277, 469
DpnII GATC 2 cut(s) 275, 467
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 143
EciI GGCGGA 4 cut(s) 234, 306, 330, 382
Ecl136II GAGCTC 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 374
Eco32I GATATC 1 cut(s) 399
Eco53kI GAGCTC 1 cut(s) 372
EcoICRI GAGCTC 1 cut(s) 372
EcoRV GATATC 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 1 cut(s) 60
FaiI YATR 3 cut(s) 58, 87, 377
FaqI GGGAC 1 cut(s) 431
FatI CATG 1 cut(s) 56
FblI GTMKAC 1 cut(s) 478
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 374
FspAI RTGCGCAY 1 cut(s) 457
FspI TGCGCA 1 cut(s) 457
GlaI GCGC 2 cut(s) 7, 457
HaeIII GGCC 1 cut(s) 145
HgaI GACGC 1 cut(s) 101
HhaI GCGC 2 cut(s) 8, 458
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 2 cut(s) 6, 456
HinP1I GCGC 2 cut(s) 6, 456
HincII GTYRAC 1 cut(s) 479
HindII GTYRAC 1 cut(s) 479
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 3 cut(s) 419, 439, 480
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 5 cut(s) 273, 363, 393, 403, 429
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 479
Hpy99I CGWCG 3 cut(s) 95, 208, 397
HpyAV CCTTC 4 cut(s) 176, 336, 342, 354
HpyCH4III ACNGT 2 cut(s) 49, 462
HpyCH4V TGCA 2 cut(s) 20, 77
HpyF3I CTNAG 2 cut(s) 170, 287
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 2 cut(s) 6, 456
Kzo9I GATC 2 cut(s) 275, 467
LmnI GCTCC 3 cut(s) 244, 369, 377
LpnPI CCDG 2 cut(s) 249, 363
MaeIII GTNAC 1 cut(s) 257
MalI GATC 2 cut(s) 277, 469
MboI GATC 2 cut(s) 275, 467
MboII GAAGA 1 cut(s) 439
MfeI CAATTG 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 374
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 4 cut(s) 138, 149, 305, 430
MluI ACGCGT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 2 cut(s) 413, 474
MmeI TCCRAC 2 cut(s) 320, 416
MnlI CCTC 7 cut(s) 191, 252, 296, 310, 330, 348, 357
Mox20I TGGCCA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 145
MseI TTAA 3 cut(s) 26, 152, 158
Msp20I TGGCCA 1 cut(s) 145
MunI CAATTG 1 cut(s) 305
MvnI CGCG 1 cut(s) 95
NdeII GATC 2 cut(s) 275, 467
NlaIII CATG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 257
NsbI TGCGCA 1 cut(s) 457
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 2 cut(s) 212, 389
PfeI GAWTC 1 cut(s) 439
Ple19I CGATCG 1 cut(s) 470
PleI GAGTC 2 cut(s) 413, 474
PpsI GAGTC 2 cut(s) 413, 474
PsiI TTATAA 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 374
PvuI CGATCG 1 cut(s) 470
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SacI GAGCTC 1 cut(s) 374
SalI GTCGAC 1 cut(s) 477
SaqAI TTAA 3 cut(s) 26, 152, 158
Sau3AI GATC 2 cut(s) 275, 467
SchI GAGTC 2 cut(s) 413, 474
SduI GDGCHC 1 cut(s) 374
SetI ASST 7 cut(s) 134, 214, 241, 293, 302, 328, 374
SphI GCATGC 1 cut(s) 60
Sse9I AATT 4 cut(s) 138, 149, 305, 430
SsiI CCGC 4 cut(s) 245, 317, 341, 367
SstI GAGCTC 1 cut(s) 374
TaaI ACNGT 2 cut(s) 49, 462
TaqI TCGA 5 cut(s) 206, 215, 466, 470, 478
TasI AATT 4 cut(s) 138, 149, 305, 430
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 3 cut(s) 26, 152, 158
Tru9I TTAA 3 cut(s) 26, 152, 158
TscAI CASTG 2 cut(s) 54, 357
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 2 cut(s) 54, 357
XapI RAATTY 2 cut(s) 138, 430
XceI RCATGY 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.