Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Reverse (-)

5066623 .. 5069558

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0066900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTTATACGTGCCAAAAAGAAATCAGGGAGCATTAGTTCCATGCTGAACGACCATTTACTTTTCCTAATCCTTAACAAAATCAAGAACAAACGAGATAGAGAATCGTTCTCGTTGGTCTGCAAGCAGTGGTTAAGAGTGGAACGTCTGAGCCGAACATCACTTTGGGTTCGCCAATCCGTACCCCCGGGTCTAATGACTAGATTCCCAAACTTAGTCCATTTCAGAACACGTGAGCTTACCACGAGAAGGAAAAAGAGAAATAAAAGAGCATGGAAGTGTCAGCAGACCGATACCCACCTCGAGGTCATAGCCAAAACGTGTCACGAACTCGAGAGTCGAGACCTTCATGCACTTAGAGCAATTGGATCATCTTCCATTAGCGCCTTGGAATTGGTATTTTGTGATAAAATTACTGATGTAGGATTAGGGTTTTTGGCAAATGGTTCTACCTCAAAAACCATCAAGAAATTGGTCCTTGTGGGGTGCCCTCTTATCACTGATATTGGAGGTGTGGCAATTTCTGCAATTCAAACCCTCAAGGTATTGAGATTGAATGATGTGGACGTGTCAGACCATACCATGGTCGCTCTTGCCAAGAATTGCAGCAAAATAGAAATACTTGATTTAGAGTATTGTGAAAGGGTAACCGGAGCTGGCATTCGTGCATTTTCAAGTCATAAGTGCTTGAAGCTCCTTGCATTGTTTGGTTTAAGCAGCTTAGATCAATCTGATGTGGAATGCATAGCGCTTGGATGCCCGTCATTGGAGTCTGTTGTTATAGACAACTTGTTAACTAGGGGTTTTGAATTGATGCAAGAGAACACTAGAAGAGTGGTTAAATTCAAAAGCTCCTATAATCTTCCCCTTCCCCGTTTCAGCACCACCTCATGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

299

Amino Acids

33.68

Weight (kDa)

9.69

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	16 - 53	1.7e-10	F-box
DUF7885	PF25372	123 - 265	2.1e-09	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	486
AccB7I	CCANNNNNTGG	2 cut(s)	583, 891
AclWI	GGATC	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	842
AcvI	CACGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	183
AfeI	AGCGCT	1 cut(s)	750
AfiI	CCNNNNNNNGG	5 cut(s)	249, 304, 583, 766, 891
AflIII	ACRYGT	3 cut(s)	230, 320, 567
AgsI	TTSAA	6 cut(s)	533, 556, 675, 691, 809, 847
AjiI	CACGTC	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	5 cut(s)	238, 656, 694, 720, 852
AluI	AGCT	5 cut(s)	238, 656, 694, 720, 852
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	3 cut(s)	187, 302, 332
Aor51HI	AGCGCT	1 cut(s)	750
ApeKI	GCWGC	2 cut(s)	606, 717
ApoI	RAATTY	1 cut(s)	842
AspLEI	GCGC	2 cut(s)	386, 751
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	2 cut(s)	188, 189
AvaI	CYCGRG	3 cut(s)	187, 302, 332
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	244
BbrPI	CACGTG	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	618, 729
BccI	CCATC	1 cut(s)	470
BcnI	CCSGG	2 cut(s)	188, 189
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	3 cut(s)	201, 798, 828
BfoI	RGCGCY	2 cut(s)	387, 752
BisI	GCNGC	2 cut(s)	607, 718
BlsI	GCNGC	2 cut(s)	608, 719
Bme1390I	CCNGG	2 cut(s)	188, 189
Bme18I	GGWCC	1 cut(s)	475
BmeT110I	CYCGRG	3 cut(s)	187, 302, 332
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	2 cut(s)	188, 189
BmsI	GCATC	2 cut(s)	746, 804
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	2 cut(s)	188, 189
BsaAI	YACGTR	2 cut(s)	11, 233
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	186, 187, 387, 582
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	5 cut(s)	249, 304, 583, 766, 891
BseDI	CCNNGG	4 cut(s)	186, 187, 387, 582
BseGI	GGATG	1 cut(s)	761
BseLI	CCNNNNNNNGG	5 cut(s)	249, 304, 583, 766, 891
BseMII	CTCAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	618, 729
BshNI	GGYRCC	1 cut(s)	486
BsiHKCI	CYCGRG	3 cut(s)	187, 302, 332
BsiSI	CCGG	2 cut(s)	188, 651
BslI	CCNNNNNNNGG	5 cut(s)	249, 304, 583, 766, 891
BsmAI	GTCTC	1 cut(s)	336
BsmI	GAATGC	2 cut(s)	660, 746
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	3 cut(s)	187, 302, 332
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	2 cut(s)	368, 724
Bsp19I	CCATGG	1 cut(s)	582
BspCNI	CTCAG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	336
BssECI	CCNNGG	4 cut(s)	186, 187, 387, 582
BssMI	GATC	2 cut(s)	368, 724
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	387, 582
Bst2BI	CACGAG	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	826
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstBAI	YACGTR	2 cut(s)	11, 233
BstC8I	GCNNGC	2 cut(s)	125, 658
BstDEI	CTNAG	4 cut(s)	149, 214, 356, 721
BstDSI	CCRYGG	1 cut(s)	582
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	761
BstH2I	RGCGCY	2 cut(s)	387, 752
BstHHI	GCGC	2 cut(s)	386, 751
BstKTI	GATC	2 cut(s)	371, 727
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	368, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 524
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	186, 187
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	618, 729
BtgI	CCRYGG	1 cut(s)	582
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	761
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	134, 498
Cac8I	GCNNGC	2 cut(s)	125, 658
CfoI	GCGC	2 cut(s)	386, 751
Cfr13I	GGNCC	1 cut(s)	475
Cfr9I	CCCGGG	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	5 cut(s)	43, 273, 350, 583, 891
CviJI	RGCY	7 cut(s)	153, 238, 314, 656, 694, 720, 852
CviKI_1	RGCY	7 cut(s)	153, 238, 314, 656, 694, 720, 852
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	149, 214, 356, 721
DpnI	GATC	2 cut(s)	370, 726
DpnII	GATC	2 cut(s)	368, 724
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	387, 582
Eco31I	GGTCTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	475
Eco47III	AGCGCT	1 cut(s)	750
Eco72I	CACGTG	1 cut(s)	233
Eco88I	CYCGRG	3 cut(s)	187, 302, 332
Eco91I	GGTNACC	1 cut(s)	646
EcoO65I	GGTNACC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	387, 582
EcoT22I	ATGCAT	1 cut(s)	746
ErhI	CCWWGG	2 cut(s)	387, 582
FaeI	CATG	5 cut(s)	46, 276, 353, 586, 894
FatI	CATG	5 cut(s)	42, 272, 349, 582, 890
Fnu4HI	GCNGC	2 cut(s)	607, 718
FokI	GGATG	1 cut(s)	768
Fsp4HI	GCNGC	2 cut(s)	607, 718
FspBI	CTAG	3 cut(s)	201, 798, 828
GlaI	GCGC	2 cut(s)	385, 750
GluI	GCNGC	2 cut(s)	607, 718
HaeII	RGCGCY	2 cut(s)	387, 752
HapII	CCGG	2 cut(s)	188, 651
HhaI	GCGC	2 cut(s)	386, 751
Hin1II	CATG	5 cut(s)	46, 276, 353, 586, 894
Hin6I	GCGC	2 cut(s)	384, 749
HinP1I	GCGC	2 cut(s)	384, 749
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HinfI	GANTC	4 cut(s)	104, 204, 337, 770
HpaI	GTTAAC	1 cut(s)	795
HpaII	CCGG	2 cut(s)	188, 651
Hpy166II	GTNNAC	2 cut(s)	565, 795
Hpy188I	TCNGA	4 cut(s)	150, 227, 574, 733
Hpy188III	TCNNGA	5 cut(s)	85, 326, 334, 341, 466
Hpy8I	GTNNAC	2 cut(s)	565, 795
HpyAV	CCTTC	3 cut(s)	243, 356, 878
HpyCH4IV	ACGT	5 cut(s)	10, 145, 232, 320, 567
HpyCH4V	TGCA	8 cut(s)	123, 353, 527, 606, 668, 701, 744, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 524
HpyF3I	CTNAG	4 cut(s)	149, 214, 356, 721
HpySE526I	ACGT	5 cut(s)	10, 145, 232, 320, 567
Hsp92II	CATG	5 cut(s)	46, 276, 353, 586, 894
HspAI	GCGC	2 cut(s)	384, 749
KspAI	GTTAAC	1 cut(s)	795
Kzo9I	GATC	2 cut(s)	368, 724
LmnI	GCTCC	4 cut(s)	30, 653, 699, 857
LpnPI	CCDG	4 cut(s)	12, 201, 642, 664
Lsp1109I	GCAGC	2 cut(s)	618, 729
LweI	GCATC	2 cut(s)	746, 804
MaeI	CTAG	3 cut(s)	201, 798, 828
MaeII	ACGT	5 cut(s)	10, 145, 232, 320, 567
MaeIII	GTNAC	2 cut(s)	323, 646
MalI	GATC	2 cut(s)	370, 726
MboI	GATC	2 cut(s)	368, 724
MboII	GAAGA	3 cut(s)	366, 843, 854
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	9 cut(s)	363, 392, 411, 470, 519, 528, 601, 809, 842
MlyI	GAGTC	2 cut(s)	346, 779
MnlI	CCTC	7 cut(s)	298, 311, 463, 501, 503, 548, 898
Mph1103I	ATGCAT	1 cut(s)	746
MseI	TTAA	5 cut(s)	75, 134, 713, 794, 840
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	2 cut(s)	188, 651
MspR9I	CCNGG	2 cut(s)	188, 189
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	2 cut(s)	660, 746
MwoI	GCNNNNNNNGC	2 cut(s)	359, 524
NciI	CCSGG	2 cut(s)	188, 189
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	2 cut(s)	368, 724
NlaIII	CATG	5 cut(s)	46, 276, 353, 586, 894
NlaIV	GGNNCC	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	746
PaeR7I	CTCGAG	2 cut(s)	302, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PctI	GAATGC	2 cut(s)	660, 746
PfeI	GAWTC	2 cut(s)	104, 204
PflMI	CCANNNNNTGG	2 cut(s)	583, 891
PkrI	GCNGC	2 cut(s)	608, 719
PleI	GAGTC	2 cut(s)	345, 778
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
PpsI	GAGTC	2 cut(s)	345, 778
Ppu21I	YACGTR	2 cut(s)	11, 233
PspCI	CACGTG	1 cut(s)	233
PspEI	GGTNACC	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	1 cut(s)	475
PspXI	VCTCGAGB	1 cut(s)	302
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	277
SaqAI	TTAA	5 cut(s)	75, 134, 713, 794, 840
SatI	GCNGC	2 cut(s)	607, 718
Sau3AI	GATC	2 cut(s)	368, 724
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	2 cut(s)	346, 779
ScrFI	CCNGG	2 cut(s)	188, 189
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	2 cut(s)	746, 804
Sfr274I	CTCGAG	2 cut(s)	302, 332
SinI	GGWCC	1 cut(s)	475
SlaI	CTCGAG	2 cut(s)	302, 332
SmaI	CCCGGG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	3 cut(s)	302, 332, 539
SmoI	CTYRAG	3 cut(s)	302, 332, 539
Sse9I	AATT	9 cut(s)	363, 392, 411, 470, 519, 528, 601, 809, 842
SspMI	CTAG	3 cut(s)	201, 798, 828
StyD4I	CCNGG	2 cut(s)	186, 187
StyI	CCWWGG	2 cut(s)	387, 582
TaiI	ACGT	5 cut(s)	13, 148, 235, 323, 570
TaqI	TCGA	3 cut(s)	303, 333, 340
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	9 cut(s)	363, 392, 411, 470, 519, 528, 601, 809, 842
TfiI	GAWTC	2 cut(s)	104, 204
Tru1I	TTAA	5 cut(s)	75, 134, 713, 794, 840
Tru9I	TTAA	5 cut(s)	75, 134, 713, 794, 840
TscAI	CASTG	2 cut(s)	134, 505
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	606, 717
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	169
TspMI	CCCGGG	1 cut(s)	187
TspRI	CASTG	2 cut(s)	134, 505
Van91I	CCANNNNNTGG	2 cut(s)	583, 891
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	842
XcmI	CCANNNNNNNNNTGG	2 cut(s)	385, 469
XhoI	CTCGAG	2 cut(s)	302, 332
XmaI	CCCGGG	1 cut(s)	187
XspI	CTAG	3 cut(s)	201, 798, 828
Zsp2I	ATGCAT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.