Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

15112291 .. 15112524

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCTGCCGAAGGTTTGCGTGCTCCAGATGCTCAGCAAGACCACGCTCGACTCCGTCCATGATATCCGCCGCAAGCAGGTCCGGCGAACGGCCGGGTTCTTCTACGGCCGGGTCGAGTCGTCGGTGAACGTGGGGGAGCGGATGTTTCTGAACACGCTGAACGTGGTTACCACCATGTGGAGCGGAACTGTGAGGGAGGAGGCGCCGGGCTCGGGAGGGAGTTCCGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

78

Amino Acids

8.51

Weight (kDa)

10.16

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	177
AccBSI	CCGCTC	2 cut(s)	139, 183
AciI	CCGC	4 cut(s)	67, 70, 139, 183
AcoI	YGGCCR	2 cut(s)	90, 106
AcyI	GRCGYC	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	177
AfiI	CCNNNNNNNGG	4 cut(s)	76, 88, 177, 212
Alw21I	GWGCWC	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	2 cut(s)	90, 106
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	4 cut(s)	94, 110, 207, 226
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	24
BceAI	ACGGC	2 cut(s)	105, 121
BcnI	CCSGG	4 cut(s)	94, 110, 207, 226
BfoI	RGCGCY	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	2 cut(s)	5, 70
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	2 cut(s)	6, 71
Bme1390I	CCNGG	4 cut(s)	94, 110, 207, 226
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	4 cut(s)	94, 110, 207, 226
BmsI	GCATC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	8
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuMI	CCSGG	4 cut(s)	94, 110, 207, 226
BsaHI	GRCGYC	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 88, 177, 212
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	4 cut(s)	76, 88, 177, 212
BseMII	CTCAG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	212
BseX3I	CGGCCG	2 cut(s)	90, 106
Bsh1285I	CGRYCG	2 cut(s)	93, 109
BshFI	GGCC	2 cut(s)	92, 108
BshNI	GGYRCC	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	93, 109
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	5 cut(s)	82, 93, 109, 206, 225
BslI	CCNNNNNNNGG	4 cut(s)	76, 88, 177, 212
BsnI	GGCC	2 cut(s)	92, 108
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	24, 212
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	4 cut(s)	67, 70, 139, 183
BspANI	GGCC	2 cut(s)	92, 108
BspCNI	CTCAG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	202
BsrBI	CCGCTC	2 cut(s)	139, 183
BssNI	GRCGYC	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	20, 74
BstDEI	CTNAG	1 cut(s)	32
BstEII	GGTNACC	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstMCI	CGRYCG	2 cut(s)	93, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 82
BstPI	GGTNACC	1 cut(s)	166
BstSCI	CCNGG	4 cut(s)	92, 108, 205, 224
BstZI	CGGCCG	2 cut(s)	90, 106
BsuRI	GGCC	2 cut(s)	92, 108
BtsCI	GGATG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	20, 74
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	2 cut(s)	59, 175
CviJI	RGCY	3 cut(s)	92, 108, 210
CviKI_1	RGCY	3 cut(s)	92, 108, 210
DdeI	CTNAG	1 cut(s)	32
DinI	GGCGCC	1 cut(s)	204
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	2 cut(s)	90, 106
EagI	CGGCCG	2 cut(s)	90, 106
EciI	GGCGGA	1 cut(s)	56
EclXI	CGGCCG	2 cut(s)	90, 106
Eco24I	GRGCYC	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	79
Eco52I	CGGCCG	2 cut(s)	90, 106
Eco88I	CYCGRG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	212
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
FaeI	CATG	2 cut(s)	62, 178
FaiI	YATR	2 cut(s)	60, 176
FatI	CATG	2 cut(s)	58, 174
Fnu4HI	GCNGC	2 cut(s)	5, 70
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	5, 70
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	5, 70
GsuI	CTGGAG	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	92, 108
HapII	CCGG	5 cut(s)	82, 93, 109, 206, 225
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	62, 178
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	50, 116
HpaII	CCGG	5 cut(s)	82, 93, 109, 206, 225
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	2 cut(s)	25, 213
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	129, 162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 82
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	2 cut(s)	129, 162
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	62, 178
HspAI	GCGC	1 cut(s)	203
KasI	GGCGCC	1 cut(s)	202
LmnI	GCTCC	3 cut(s)	27, 136, 180
LpnPI	CCDG	6 cut(s)	38, 62, 95, 106, 122, 219
LweI	GCATC	1 cut(s)	18
MaeII	ACGT	2 cut(s)	129, 162
MaeIII	GTNAC	1 cut(s)	166
MbiI	CCGCTC	2 cut(s)	139, 183
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	24, 212
Mly113I	GGCGCC	1 cut(s)	203
MlyI	GAGTC	2 cut(s)	44, 125
MnlI	CCTC	4 cut(s)	186, 190, 193, 209
MspI	CCGG	5 cut(s)	82, 93, 109, 206, 225
MspR9I	CCNGG	4 cut(s)	94, 110, 207, 226
MwoI	GCNNNNNNNGC	2 cut(s)	28, 82
NarI	GGCGCC	1 cut(s)	203
NciI	CCSGG	4 cut(s)	94, 110, 207, 226
NlaIII	CATG	2 cut(s)	62, 178
NlaIV	GGNNCC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	6, 71
PleI	GAGTC	2 cut(s)	44, 124
PluTI	GGCGCC	1 cut(s)	206
PpsI	GAGTC	2 cut(s)	44, 124
PspEI	GGTNACC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	53
SatI	GCNGC	2 cut(s)	5, 70
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	2 cut(s)	44, 125
ScrFI	CCNGG	4 cut(s)	94, 110, 207, 226
SduI	GDGCHC	2 cut(s)	24, 212
SetI	ASST	4 cut(s)	15, 81, 132, 165
SfaNI	GCATC	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	79
SsiI	CCGC	4 cut(s)	67, 70, 139, 183
SspDI	GGCGCC	1 cut(s)	202
StyD4I	CCNGG	4 cut(s)	92, 108, 205, 224
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	132, 165
TaqI	TCGA	2 cut(s)	48, 114
TauI	GCSGC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.