Rorug05G0288500

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000377
Physical Location & Seq
Forward (+)
33107295 .. 33108463
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0288500.1

Sequence Viewer

Length: 210 bp
ATGAAGAAGGGATTGCACCCTCAGATGCAATGGGTATCCTATGTGACGCAGAGCGGGAGATTGATGCACGTTATGATGACCAAGATACACCATGTCGGTAAAGTCTACCACTTGAAGGCGAAGCGTCAAATGGCTGAGAACCTTGGGCAGGTTGCCAAGTTCAGGCAACGTTATGAGAAGGCGGCTCCTACTCAGAAAGATGCACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

69

Amino Acids

8.06

Weight (kDa)

10.46

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 105
AciI CCGC 2 cut(s) 54, 182
AclI AACGTT 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 115, 148, 162
AgsI TTSAA 1 cut(s) 115
BciVI GTATCC 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 139
BfuI GTATCC 1 cut(s) 46
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 3 cut(s) 15, 54, 190
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 148, 162
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 115, 148, 162
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 3 cut(s) 35, 126, 206
BslI CCNNNNNNNGG 3 cut(s) 115, 148, 162
BspACI CCGC 2 cut(s) 54, 182
BspCNI CTCAG 3 cut(s) 34, 127, 205
BspLI GGNNCC 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 21, 135, 192
BstENI CCTNNNNNAGG 1 cut(s) 146
BsuI GTATCC 1 cut(s) 46
BveI ACCTGC 1 cut(s) 139
CseI GACGC 2 cut(s) 55, 113
CviAII CATG 1 cut(s) 92
CviJI RGCY 2 cut(s) 134, 185
CviKI_1 RGCY 2 cut(s) 134, 185
DdeI CTNAG 3 cut(s) 21, 135, 192
Eco130I CCWWGG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 95
FaiI YATR 4 cut(s) 42, 74, 93, 174
FatI CATG 1 cut(s) 91
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
HgaI GACGC 2 cut(s) 55, 113
Hin1II CATG 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 24, 195
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 109, 172
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 2 cut(s) 69, 169
HpyCH4V TGCA 4 cut(s) 16, 28, 67, 203
HpyF3I CTNAG 3 cut(s) 21, 135, 192
HpySE526I ACGT 2 cut(s) 69, 169
Hsp92II CATG 1 cut(s) 95
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 134, 148
LweI GCATC 3 cut(s) 15, 54, 190
MaeII ACGT 2 cut(s) 69, 169
MaeIII GTNAC 1 cut(s) 43
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 1 cut(s) 16
MnlI CCTC 1 cut(s) 30
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 186
SatI GCNGC 1 cut(s) 183
SetI ASST 4 cut(s) 72, 144, 153, 172
SfaNI GCATC 3 cut(s) 15, 54, 190
SgeI CNNG 9 cut(s) 67, 80, 94, 104, 124, 155, 161, 169, 175
SsiI CCGC 2 cut(s) 54, 182
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 2 cut(s) 72, 172
TauI GCSGC 1 cut(s) 185
TseFI GTSAC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.