Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

5084095 .. 5091476

Gene Structure 7382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0067100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTATGCAAAGTGTGAGACTTTTGATGATTTTGGGAAAGTTTTCGGTAGGATTAGGAACATTCACCGTCTAAATGAGGCTGGTGTCCTTGATAAGGACAAAGCCGCTGCTCACTTTCAGGTTGGTTCGATTGAAGGGAGAGTTGGAGTGCAGCATCTGGAGGAGGGACAAGAAAGTAAAAACTTTATTACATTCAAATGCCACAGAGAAAACAATGCTTTTTACTCAGTCAACTCTATAAACTTTCACCCTGTGCATCACACATTTCTACAGCTGGTTCTGATGGTTCTATCAGTTTTTGGGATAAGCACAGCAAAAAGAGACTCAAGGCCATGCAAAGGTGCAATCAACCCATTCCTTGCAGTACTTTCAACAATGATGGTTCCGTATTTGTATACTCGGCACCCTAAGCCTTCATTTGGACCTCACAAGTCCAGGGAATACCTGCCATTGATCATTATCTTGCGAAACTGGTTGAAATACGCTCTCACTTACCGTGAAGTCATTTCCATTTTGATGCAACGACATGTTCTGGTTGATGGGAAGGTTAGGACTGACAAAACCTATCCTTCAGGTTTCATGGATGTTATATCAATCCCGAAAACAAATGAGAATTTCCTTCTCCTTTATGACACAAAGGGTGGGAGGTTGGATCAACTCATGAGGGTTGGGTGCCTCCACAGGTTGGATCAACTCAGGAGGATTGGGTGCCTCCACAGCCGAGTCCTAATAGCTTATTTGCCTATTGTTGGAAGTATAGGATCAGCTGTCAACATTGGCTGCTGTCAATGTTGGCTGGCTGCTGCATTTACATATGCATTTACACATGTTGTATTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

280

Amino Acids

31.85

Weight (kDa)

9.47

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	453
AccB1I	GGYRCC	3 cut(s)	402, 672, 708
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	3 cut(s)	660, 696, 769
AcsI	RAATTY	1 cut(s)	613
AcuI	CTGAAG	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	5 cut(s)	94, 338, 419, 685, 749
AflIII	ACRYGT	2 cut(s)	526, 826
AgsI	TTSAA	4 cut(s)	134, 196, 372, 478
AjnI	CCWGG	1 cut(s)	434
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	3 cut(s)	274, 734, 767
AluI	AGCT	3 cut(s)	274, 734, 767
Alw26I	GTCTC	2 cut(s)	11, 315
AlwI	GGATC	3 cut(s)	660, 696, 769
AlwNI	CAGNNNCTG	1 cut(s)	157
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	5 cut(s)	107, 151, 780, 800, 803
ApoI	RAATTY	1 cut(s)	613
Asp700I	GAANNNNTTC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	56, 239
AvaII	GGWCC	1 cut(s)	422
BanI	GGYRCC	3 cut(s)	402, 672, 708
BbvI	GCAGC	5 cut(s)	94, 163, 767, 787, 790
BccI	CCATC	3 cut(s)	277, 373, 533
BciT130I	CCWGG	1 cut(s)	436
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	2 cut(s)	11, 315
BfmI	CTRYAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	6 cut(s)	105, 108, 152, 781, 801, 804
BlsI	GCNGC	6 cut(s)	106, 109, 153, 782, 802, 805
BmcAI	AGTACT	1 cut(s)	366
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	4 cut(s)	384, 404, 674, 710
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	3 cut(s)	163, 265, 507
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 338, 419, 685, 749
Bse1I	ACTGG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	5 cut(s)	94, 338, 419, 685, 749
BseMII	CTCAG	2 cut(s)	240, 709
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	5 cut(s)	94, 163, 767, 787, 790
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	3 cut(s)	402, 672, 708
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	5 cut(s)	94, 338, 419, 685, 749
BsmAI	GTCTC	2 cut(s)	11, 315
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	453, 652, 688, 761
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	239, 708
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	4 cut(s)	384, 404, 674, 710
BspMI	ACCTGC	1 cut(s)	453
BspPI	GGATC	3 cut(s)	660, 696, 769
BspT107I	GGYRCC	3 cut(s)	402, 672, 708
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	4 cut(s)	453, 652, 688, 761
BssNAI	GTATAC	1 cut(s)	396
Bst1107I	GTATAC	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	68, 497
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	3 cut(s)	226, 408, 695
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	4 cut(s)	456, 655, 691, 764
BstMAI	GTCTC	2 cut(s)	11, 315
BstMBI	GATC	4 cut(s)	453, 652, 688, 761
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 717
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	2 cut(s)	530, 830
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	269
BstV1I	GCAGC	5 cut(s)	94, 163, 767, 787, 790
BstZ17I	GTATAC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	589
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	1 cut(s)	157
CciI	TCATGA	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	5 cut(s)	333, 527, 580, 661, 827
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	3 cut(s)	226, 408, 695
DpnI	GATC	4 cut(s)	455, 654, 690, 763
DpnII	GATC	4 cut(s)	453, 652, 688, 761
DraIII	CACNNNGTG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	555
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	820
FaeI	CATG	5 cut(s)	336, 530, 583, 664, 830
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	5 cut(s)	332, 526, 579, 660, 826
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	6 cut(s)	105, 108, 152, 781, 801, 804
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	6 cut(s)	105, 108, 152, 781, 801, 804
GluI	GCNGC	6 cut(s)	105, 108, 152, 781, 801, 804
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	331
Hin1II	CATG	5 cut(s)	336, 530, 583, 664, 830
HincII	GTYRAC	2 cut(s)	232, 772
HindII	GTYRAC	2 cut(s)	232, 772
HinfI	GANTC	2 cut(s)	323, 723
HphI	GGTGA	2 cut(s)	56, 239
Hpy166II	GTNNAC	3 cut(s)	232, 396, 772
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	4 cut(s)	158, 598, 661, 697
Hpy8I	GTNNAC	3 cut(s)	232, 396, 772
HpyAV	CCTTC	5 cut(s)	128, 423, 538, 579, 629
HpyCH4III	ACNGT	2 cut(s)	68, 497
HpyCH4V	TGCA	9 cut(s)	8, 151, 256, 336, 344, 362, 520, 806, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 717
HpyF3I	CTNAG	3 cut(s)	226, 408, 695
Hsp92II	CATG	5 cut(s)	336, 530, 583, 664, 830
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	453, 652, 688, 761
Lsp1109I	GCAGC	5 cut(s)	94, 163, 767, 787, 790
LweI	GCATC	3 cut(s)	163, 265, 507
MalI	GATC	4 cut(s)	455, 654, 690, 763
MboI	GATC	4 cut(s)	453, 652, 688, 761
MluCI	AATT	1 cut(s)	613
MlyI	GAGTC	2 cut(s)	317, 732
MmeI	TCCRAC	4 cut(s)	124, 630, 666, 730
MnlI	CCTC	9 cut(s)	70, 154, 157, 435, 639, 657, 686, 693, 722
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	196, 515
MspA1I	CMGCKG	3 cut(s)	107, 274, 767
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	409, 717
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	4 cut(s)	453, 652, 688, 761
NlaIII	CATG	5 cut(s)	336, 530, 583, 664, 830
NlaIV	GGNNCC	4 cut(s)	384, 404, 674, 710
NmeAIII	GCCGAG	2 cut(s)	379, 746
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	2 cut(s)	530, 830
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	2 cut(s)	526, 826
PdmI	GAANNNNTTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	685
PkrI	GCNGC	6 cut(s)	106, 109, 153, 782, 802, 805
PleI	GAGTC	2 cut(s)	317, 731
PpsI	GAGTC	2 cut(s)	317, 731
PscI	ACATGT	2 cut(s)	526, 826
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	4 cut(s)	384, 404, 674, 710
PspPI	GGNCC	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	157
PvuII	CAGCTG	2 cut(s)	274, 767
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	2 cut(s)	196, 515
SatI	GCNGC	6 cut(s)	105, 108, 152, 781, 801, 804
Sau3AI	GATC	4 cut(s)	453, 652, 688, 761
Sau96I	GGNCC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	366
SchI	GAGTC	2 cut(s)	317, 732
ScrFI	CCNGG	1 cut(s)	436
SfaNI	GCATC	3 cut(s)	163, 265, 507
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	196, 515
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	1 cut(s)	613
SsiI	CCGC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	68, 497
TaqI	TCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	613
TatI	WGTACW	1 cut(s)	364
TauI	GCSGC	1 cut(s)	107
TseI	GCWGC	5 cut(s)	107, 151, 780, 800, 803
TspDTI	ATGAA	2 cut(s)	405, 568
TspGWI	ACGGA	1 cut(s)	375
Van91I	CCANNNNNTGG	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	613
XceI	RCATGY	2 cut(s)	530, 830
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.