Rroxscaffold_2G00113690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000377
Physical Location & Seq
Forward (+)
39416297 .. 39424047
7751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113690.1

Sequence Viewer

Length: 336 bp
ATGGATGACCAAAGCGACAACTCCCCCTGCATTGTGGGTCGGTTTCACAATATTGACGAAAGGCTAATGGAGATTCTGCCTCCTCGACTTGGGCGCGGTGCTTCTACTATACATGGTTTTGTGGCCGGAGATGGCCTGAATTGGAAGAAATCGACGATTGAAGCTGATTGCTACAGTAAAGTTTTGGAGCTTGATTTACGAGATTTTGGCCAAATCGTCAAGAACAACCACCGTAGGCATGTCAAGGGGGAGGAGGAGCGCCTTCCACTGCCCGGAATTCTACATTTCAATACGATCATTTCGATATATTATACGCAATTTTTTGATATCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.75

Weight (kDa)

5.91

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 2 cut(s) 123, 208
AcsI RAATTY 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 89, 272
AgsI TTSAA 2 cut(s) 161, 289
AluBI AGCT 2 cut(s) 164, 190
AluI AGCT 2 cut(s) 164, 190
AoxI GGCC 3 cut(s) 123, 133, 208
ApoI RAATTY 1 cut(s) 276
AspLEI GCGC 2 cut(s) 96, 261
AsuC2I CCSGG 1 cut(s) 273
BalI TGGCCA 1 cut(s) 210
BccI CCATC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 272
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 89, 272
BseRI GAGGAG 3 cut(s) 72, 266, 269
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 125, 135, 210
BsiSI CCGG 2 cut(s) 126, 273
BslI CCNNNNNNNGG 2 cut(s) 89, 272
BsnI GGCC 3 cut(s) 125, 135, 210
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 125, 135, 210
BspFNI CGCG 1 cut(s) 96
BssMI GATC 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 176, 233
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 2 cut(s) 96, 261
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 1 cut(s) 96
BsuRI GGCC 3 cut(s) 125, 135, 210
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
CfoI GCGC 2 cut(s) 96, 261
CviAII CATG 2 cut(s) 113, 239
CviJI RGCY 6 cut(s) 64, 125, 135, 164, 190, 210
CviKI_1 RGCY 6 cut(s) 64, 125, 135, 164, 190, 210
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
EaeI YGGCCR 2 cut(s) 123, 208
Eco32I GATATC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 276
EcoRV GATATC 1 cut(s) 328
FaeI CATG 2 cut(s) 116, 242
FaiI YATR 7 cut(s) 110, 114, 240, 307, 312, 332, 334
FatI CATG 2 cut(s) 112, 238
FauNDI CATATG 1 cut(s) 332
FokI GGATG 1 cut(s) 17
GlaI GCGC 2 cut(s) 95, 260
HaeII RGCGCY 1 cut(s) 262
HaeIII GGCC 3 cut(s) 125, 135, 210
HapII CCGG 2 cut(s) 126, 273
HhaI GCGC 2 cut(s) 96, 261
Hin1II CATG 2 cut(s) 116, 242
Hin6I GCGC 2 cut(s) 94, 259
HinP1I GCGC 2 cut(s) 94, 259
HinfI GANTC 1 cut(s) 73
HpaII CCGG 2 cut(s) 126, 273
Hpy188III TCNNGA 1 cut(s) 220
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 2 cut(s) 176, 233
HpyCH4V TGCA 1 cut(s) 30
Hsp92II CATG 2 cut(s) 116, 242
HspAI GCGC 2 cut(s) 94, 259
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 187, 256
LpnPI CCDG 4 cut(s) 40, 139, 149, 286
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 1 cut(s) 157
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 3 cut(s) 139, 276, 317
MluNI TGGCCA 1 cut(s) 210
MnlI CCTC 4 cut(s) 90, 93, 244, 247
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 210
MspI CCGG 2 cut(s) 126, 273
MspR9I CCNGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 96
NciI CCSGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 332
NdeII GATC 1 cut(s) 294
NlaIII CATG 2 cut(s) 116, 242
NspI RCATGY 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 299
PfeI GAWTC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 273
SetI ASST 2 cut(s) 166, 192
SfcI CTRYAG 1 cut(s) 172
Sse9I AATT 3 cut(s) 139, 276, 317
SsiI CCGC 1 cut(s) 96
SspI AATATT 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 176, 233
TaqI TCGA 3 cut(s) 85, 152, 302
TasI AATT 3 cut(s) 139, 276, 317
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 273
TspRI CASTG 1 cut(s) 273
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.