Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001030.1

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Reverse (-)

107544 .. 113860

Gene Structure 6317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001030.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

atggcatccacttatgaattcttcatggaatccaattccttatcctcactgtggtcggaaaacaacagcgggagttggggagtgttgttcactatctccgcaatttttgcagcaattgtttacgcatggagttgcctgaagagtagcagaatctcgccgccgttgcctcccggtccacgcggcctcccgctggttggtaatcttctgtccgttgacccacagctccacacctactttgcgggcctatccaaaacttacggcccaatctataagctccgactgggtaccaggctctgtgtcgtaatagcctccccttccgccgctcgagaggtgctcaaggagaatgacctcacgttctccagtcgcggcgtcaattgtgcagctggggatgtagcactctacggcggggcaggtatagtttgtaccccgtacgggccggagtggcgaatgttgaggaaagtgtgcgtgctcaagatgcttagcaacaccgccttggactcggttcaccaactgcgccactcgcaggtccgaaaagctgtgcgttacttctatagtcaggttggatcgcccgtcaacattggtgagcaacttttcgttgccacgctcaaccttaccaccaacatgttatggggtggcaccatgctggaggaggaggctggggctgaggttttggcggagtttagggaagcgatggtcgacatcgcggtgctttctgggaagcctaatatttcggagctttatccgtttttgaccaggtttgatgtgcaaggcataaggaagcagatgaaggctgtggagctcaagtttgatagcatttttgagaaagttattgaacaacggttgaaaatggacaaacaaggcgcgcaagagagcaaggattttttgacatttatgttgcgatataaagatgaaggaggagatgccaaaactcctctcaccatgacacatctcaaagccttgctcttggatatggttgtgggtgggagtgacacatcctccaacacaattgagtttgcaatggctgaaatgatgaacaaaccagtagtgttagagaaagcccagagagaattagatgctgtagttgggaaagacagtatcgtacaagagtctcatattcacagactaccatacttggaagctgtgatgaaagaaactctacgcttgcacccagccctgcctctaatgctcccacattgcccaagtgaaacatgcattgtgggaggttataccattccaaaggggtctaaggtttttgttaatgtgtgggatatccacagagacccttctaactgggaagacccattagagtttaatccagagaggttcttgaatggtaaatatgacttcactggaagcaacttcaactactttccatttgggagtggaaaaagaatatgtccagggacagcaacggcagagaggcttgtcatgcatttacttgcatcactgttgcattcttttgactggaaactaccacaaggagagactaaggtggattcttccgaaaagtttgggatggtgatgatgaagaaggtacctatggttgccatcccaactccaaggttattggattcagagctttatcaggttgagagtgaggtggagcagcttgagggattggagaaagagaggtggtttgggttgactcgtcggaggaagaaggtcgaacaagagttatgcgtagagtcggatgagcaaagaggaaggtcgggtgctgtggataatgcgaaacagcttttgaacaaggtgattgcagaaaagcttgacctagaaatcttgtcatctcccagctcctttcacattgcagatctgggttgctctgttgggccgaatacattttctgcagttgaaaacataattgaagccgtggtactcaagtatcatagccagcttggtttgaatgttcaaatccctgaatttcaagtcttcttcaatgatcatacctcaaatgacttcaacctgctcttcaaatccctccctcagaacaggcaatactacgctgccggtgtaccgggttctttctacgatcgcagatttcctgaggcttcccttcacttggttcactcttctactgcccttcactggctttctaaagtaccagcggaggtgttggacaaaaacagtcttgcttataacaaaggacgaatccattactcaaatgccacagatgaagtgataagggctcatgaaactcaatatgcggtagacatggagcgctttctccattcccgggcacaagaggttgtttatggaggactcatggtactcaacattccaggccgccctgacggcaccactcattcttatcctttcacaaaggtgaccttgcaacttttgggatcttgcctcatggacttggttgaaaagggagttgttagtgaagagaaagtagattcgtttaacatacctacgtatacaatgtctccccaagaactgaaagctgttgtagaacgaaatggatgttttagcatagagacaataacacagttacctcttgtagtcttggcagataggcctaatatggcagtgccgcaactacttgccgctcatatgagagctggcacggaagggatagtcaaggagcactttggggaagaaatattagatgagctcttcgacttgtatctcacaaaatgtgaagagcatgccactgcggttgagacagttacatttcttgttgcgcttaaacgcaaggcagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

900

Amino Acids

100.6

Weight (kDa)

5.9

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2133
Acc36I	ACCTGC	3 cut(s)	401, 514, 1968
Acc65I	GGTACC	2 cut(s)	284, 1534
AccB1I	GGYRCC	4 cut(s)	284, 635, 1534, 2291
AccBSI	CCGCTC	2 cut(s)	323, 2546
AccI	GTMKAC	3 cut(s)	696, 2205, 2414
AccII	CGCG	4 cut(s)	180, 366, 704, 863
AclWI	GGATC	2 cut(s)	571, 2347
AcsI	RAATTY	2 cut(s)	17, 1916
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	9 cut(s)	286, 424, 431, 1101, 1536, 1872, 2010, 2097, 2265
AfeI	AGCGCT	1 cut(s)	2216
AfiI	CCNNNNNNNGG	8 cut(s)	51, 190, 194, 432, 523, 2056, 2082, 2230
AflIII	ACRYGT	1 cut(s)	621
AjnI	CCWGG	4 cut(s)	287, 752, 1399, 2275
AleI	CACNNNNGTG	1 cut(s)	2318
Alw21I	GWGCWC	5 cut(s)	336, 471, 801, 2586, 2613
Alw26I	GTCTC	6 cut(s)	1113, 1272, 1478, 2427, 2468, 2654
AlwI	GGATC	2 cut(s)	571, 2347
AlwNI	CAGNNNCTG	1 cut(s)	294
Ama87I	CYCGRG	2 cut(s)	324, 2229
Aor51HI	AGCGCT	1 cut(s)	2216
AoxI	GGCC	7 cut(s)	181, 241, 259, 434, 1826, 2278, 2513
ApeKI	GCWGC	4 cut(s)	110, 380, 1606, 2000
ApoI	RAATTY	2 cut(s)	17, 1916
Asp718I	GGTACC	2 cut(s)	284, 1534
AspLEI	GCGC	5 cut(s)	516, 863, 865, 2217, 2683
AspS9I	GGNCC	6 cut(s)	173, 241, 260, 434, 526, 1826
AsuC2I	CCSGG	4 cut(s)	171, 2013, 2230, 2231
AsuHPI	GGTGA	6 cut(s)	497, 593, 928, 1531, 1759, 2332
AvaI	CYCGRG	2 cut(s)	324, 2229
AvaII	GGWCC	2 cut(s)	173, 526
AxyI	CCTNAGG	1 cut(s)	2040
BaeGI	GKGCMC	1 cut(s)	2236
BaeI	ACNNNNGTAYC	4 cut(s)	1862, 1862, 1895, 1895
BanI	GGYRCC	4 cut(s)	284, 635, 1534, 2291
BanII	GRGCYC	3 cut(s)	801, 2185, 2613
BarI	GAAGNNNNNNTAC	2 cut(s)	1854, 1886
BbsI	GAAGAC	2 cut(s)	1302, 1918
Bbv12I	GWGCWC	5 cut(s)	336, 471, 801, 2586, 2613
BbvCI	CCTCAGC	1 cut(s)	663
BbvI	GCAGC	4 cut(s)	122, 392, 1618, 1987
BccI	CCATC	3 cut(s)	685, 1510, 1556
BceAI	ACGGC	6 cut(s)	145, 274, 418, 1428, 1850, 2305
BciT130I	CCWGG	4 cut(s)	289, 754, 1401, 2277
BclI	TGATCA	1 cut(s)	1936
BcnI	CCSGG	4 cut(s)	171, 2013, 2230, 2231
BcoDI	GTCTC	6 cut(s)	1113, 1272, 1478, 2427, 2468, 2654
BfaI	CTAG	1 cut(s)	1769
BfmI	CTRYAG	3 cut(s)	550, 1077, 1842
BfoI	RGCGCY	1 cut(s)	2218
BfuAI	ACCTGC	3 cut(s)	401, 514, 1968
BglI	GCCNNNNNGGC	2 cut(s)	442, 2289
BglII	AGATCT	1 cut(s)	1807
BlpI	GCTNAGC	1 cut(s)	479
Bme1390I	CCNGG	8 cut(s)	171, 289, 754, 1401, 2013, 2230, 2231, 2277
Bme18I	GGWCC	2 cut(s)	173, 526
BmeT110I	CYCGRG	2 cut(s)	324, 2229
BmgT120I	GGNCC	6 cut(s)	173, 241, 260, 434, 526, 1826
BmiI	GGNNCC	4 cut(s)	286, 637, 1536, 2293
BmrFI	CCNGG	8 cut(s)	171, 289, 754, 1401, 2013, 2230, 2231, 2277
BmrI	ACTGGG	2 cut(s)	290, 1300
BmsI	GCATC	5 cut(s)	14, 465, 910, 1063, 1451
BmuI	ACTGGG	2 cut(s)	290, 1300
BpiI	GAAGAC	2 cut(s)	1302, 1918
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
BpmI	CTGGAG	2 cut(s)	343, 665
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	479
BpuEI	CTTGAG	5 cut(s)	320, 455, 785, 1631, 1859
BpuMI	CCSGG	4 cut(s)	171, 2013, 2230, 2231
BsaAI	YACGTR	1 cut(s)	2412
BsaHI	GRCGYC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	1272
BsaJI	CCNNGG	5 cut(s)	492, 1400, 1559, 1866, 2229
BsaXI	ACNNNNNCTCC	8 cut(s)	168, 198, 788, 818, 980, 1010, 2407, 2437
Bsc4I	CCNNNNNNNGG	8 cut(s)	51, 190, 194, 432, 523, 2056, 2082, 2230
Bse118I	RCCGGY	1 cut(s)	2003
Bse1I	ACTGG	7 cut(s)	285, 360, 1040, 1295, 1354, 1469, 2087
Bse21I	CCTNAGG	1 cut(s)	2040
Bse3DI	GCAATG	3 cut(s)	1023, 1192, 1800
BseBI	CCWGG	4 cut(s)	289, 754, 1401, 2277
BseDI	CCNNGG	5 cut(s)	492, 1400, 1559, 1866, 2229
BseGI	GGATG	7 cut(s)	5, 394, 992, 1521, 1548, 1696, 2465
BseLI	CCNNNNNNNGG	8 cut(s)	51, 190, 194, 432, 523, 2056, 2082, 2230
BseMI	GCAATG	3 cut(s)	1023, 1192, 1800
BseMII	CTCAG	3 cut(s)	654, 1994, 2031
BseNI	ACTGG	7 cut(s)	285, 360, 1040, 1295, 1354, 1469, 2087
BsePI	GCGCGC	1 cut(s)	861
BseRI	GAGGAG	4 cut(s)	662, 665, 921, 930
BseSI	GKGCMC	1 cut(s)	2236
BseXI	GCAGC	4 cut(s)	122, 392, 1618, 1987
BseYI	CCCAGC	4 cut(s)	383, 656, 1168, 1787
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	4 cut(s)	180, 366, 704, 863
Bsh1285I	CGRYCG	1 cut(s)	2029
BshFI	GGCC	7 cut(s)	183, 243, 261, 436, 1828, 2280, 2515
BshNI	GGYRCC	4 cut(s)	284, 635, 1534, 2291
BsiEI	CGRYCG	1 cut(s)	2029
BsiHKAI	GWGCWC	5 cut(s)	336, 471, 801, 2586, 2613
BsiHKCI	CYCGRG	2 cut(s)	324, 2229
BsiSI	CCGG	5 cut(s)	171, 437, 2004, 2012, 2230
BsiWI	CGTACG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	1417
BslI	CCNNNNNNNGG	8 cut(s)	51, 190, 194, 432, 523, 2056, 2082, 2230
BsmAI	GTCTC	6 cut(s)	1113, 1272, 1478, 2427, 2468, 2654
BsmFI	GGGAC	1 cut(s)	1417
BsmI	GAATGC	1 cut(s)	1453
BsnI	GGCC	7 cut(s)	183, 243, 261, 436, 1828, 2280, 2515
Bso31I	GGTCTC	1 cut(s)	1272
BsoBI	CYCGRG	2 cut(s)	324, 2229
Bsp1286I	GDGCHC	7 cut(s)	336, 471, 801, 2185, 2236, 2586, 2613
Bsp143I	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
Bsp1720I	GCTNAGC	1 cut(s)	479
BspANI	GGCC	7 cut(s)	183, 243, 261, 436, 1828, 2280, 2515
BspCNI	CTCAG	3 cut(s)	655, 1993, 2032
BspFNI	CGCG	4 cut(s)	180, 366, 704, 863
BspHI	TCATGA	1 cut(s)	2185
BspLI	GGNNCC	4 cut(s)	286, 637, 1536, 2293
BspMAI	CTGCAG	1 cut(s)	1846
BspMI	ACCTGC	3 cut(s)	401, 514, 1968
BspPI	GGATC	2 cut(s)	571, 2347
BspQI	GCTCTTC	3 cut(s)	1970, 2618, 2634
BspT107I	GGYRCC	4 cut(s)	284, 635, 1534, 2291
BspTNI	GGTCTC	1 cut(s)	1272
BsrBI	CCGCTC	2 cut(s)	323, 2546
BsrDI	GCAATG	3 cut(s)	1023, 1192, 1800
BsrFI	RCCGGY	1 cut(s)	2003
BsrI	ACTGG	7 cut(s)	285, 360, 1040, 1295, 1354, 1469, 2087
BssAI	RCCGGY	1 cut(s)	2003
BssECI	CCNNGG	5 cut(s)	492, 1400, 1559, 1866, 2229
BssHII	GCGCGC	1 cut(s)	861
BssMI	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
BssNAI	GTATAC	1 cut(s)	2415
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	492, 1559
Bst1107I	GTATAC	1 cut(s)	2415
Bst2UI	CCWGG	4 cut(s)	289, 754, 1401, 2277
Bst4CI	ACNGT	7 cut(s)	51, 840, 1094, 1449, 2123, 2487, 2665
Bst6I	CTCTTC	6 cut(s)	134, 1970, 2071, 2376, 2618, 2634
BstACI	GRCGYC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	2412
BstC8I	GCNNGC	7 cut(s)	241, 467, 863, 1163, 1889, 2560, 2646
BstDEI	CTNAG	6 cut(s)	479, 663, 1245, 1488, 1980, 2040
BstDSI	CCRYGG	1 cut(s)	1866
BstEII	GGTNACC	1 cut(s)	2320
BstF5I	GGATG	7 cut(s)	5, 394, 992, 1521, 1548, 1696, 2465
BstFNI	CGCG	4 cut(s)	180, 366, 704, 863
BstH2I	RGCGCY	1 cut(s)	2218
BstHHI	GCGC	5 cut(s)	516, 863, 865, 2217, 2683
BstKTI	GATC	5 cut(s)	566, 1810, 1939, 2029, 2342
BstMAI	GTCTC	6 cut(s)	1113, 1272, 1478, 2427, 2468, 2654
BstMBI	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
BstMCI	CGRYCG	1 cut(s)	2029
BstMWI	GCNNNNNNNGC	8 cut(s)	107, 163, 442, 475, 520, 1183, 1429, 2289
BstNI	CCWGG	4 cut(s)	289, 754, 1401, 2277
BstNSI	RCATGY	3 cut(s)	625, 1212, 2648
BstPI	GGTNACC	1 cut(s)	2320
BstSCI	CCNGG	8 cut(s)	169, 287, 752, 1399, 2011, 2228, 2229, 2275
BstSFI	CTRYAG	3 cut(s)	550, 1077, 1842
BstSLI	GKGCMC	1 cut(s)	2236
BstSNI	TACGTA	1 cut(s)	2412
BstUI	CGCG	4 cut(s)	180, 366, 704, 863
BstV1I	GCAGC	4 cut(s)	122, 392, 1618, 1987
BstV2I	GAAGAC	2 cut(s)	1302, 1918
BstX2I	RGATCY	2 cut(s)	1807, 2339
BstYI	RGATCY	2 cut(s)	1807, 2339
BstZ17I	GTATAC	1 cut(s)	2415
Bsu36I	CCTNAGG	1 cut(s)	2040
BsuRI	GGCC	7 cut(s)	183, 243, 261, 436, 1828, 2280, 2515
BtgI	CCRYGG	1 cut(s)	1866
BtgZI	GCGATG	2 cut(s)	685, 704
BtsCI	GGATG	7 cut(s)	5, 394, 992, 1521, 1548, 1696, 2465
BtsI	GCAGTG	2 cut(s)	2532, 2649
BtsIMutI	CAGTG	6 cut(s)	47, 1347, 1445, 2080, 2532, 2649
BveI	ACCTGC	3 cut(s)	401, 514, 1968
Cac8I	GCNNGC	7 cut(s)	241, 467, 863, 1163, 1889, 2560, 2646
CaiI	CAGNNNCTG	1 cut(s)	294
CciI	TCATGA	1 cut(s)	2185
CfoI	GCGC	5 cut(s)	516, 863, 865, 2217, 2683
Cfr10I	RCCGGY	1 cut(s)	2003
Cfr13I	GGNCC	6 cut(s)	173, 241, 260, 434, 526, 1826
Cfr9I	CCCGGG	1 cut(s)	2229
CseI	GACGC	1 cut(s)	358
CsiI	ACCWGGT	1 cut(s)	752
Csp6I	GTAC	9 cut(s)	285, 423, 430, 1100, 1535, 1871, 2009, 2096, 2264
CspCI	CAANNNNNGTGG	2 cut(s)	2638, 2673
CviQI	GTAC	9 cut(s)	285, 423, 430, 1100, 1535, 1871, 2009, 2096, 2264
DdeI	CTNAG	6 cut(s)	479, 663, 1245, 1488, 1980, 2040
DpnI	GATC	5 cut(s)	565, 1809, 1938, 2028, 2341
DpnII	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
Eam1104I	CTCTTC	6 cut(s)	134, 1970, 2071, 2376, 2618, 2634
EarI	CTCTTC	6 cut(s)	134, 1970, 2071, 2376, 2618, 2634
EciI	GGCGGA	2 cut(s)	307, 689
Ecl136II	GAGCTC	2 cut(s)	799, 2611
Eco105I	TACGTA	1 cut(s)	2412
Eco130I	CCWWGG	2 cut(s)	492, 1559
Eco147I	AGGCCT	1 cut(s)	2515
Eco24I	GRGCYC	3 cut(s)	801, 2185, 2613
Eco31I	GGTCTC	1 cut(s)	1272
Eco32I	GATATC	1 cut(s)	1270
Eco47I	GGWCC	2 cut(s)	173, 526
Eco47III	AGCGCT	1 cut(s)	2216
Eco53kI	GAGCTC	2 cut(s)	799, 2611
Eco57I	CTGAAG	1 cut(s)	158
Eco81I	CCTNAGG	1 cut(s)	2040
Eco88I	CYCGRG	2 cut(s)	324, 2229
Eco91I	GGTNACC	1 cut(s)	2320
EcoICRI	GAGCTC	2 cut(s)	799, 2611
EcoO65I	GGTNACC	1 cut(s)	2320
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	4 cut(s)	287, 752, 1399, 2275
EcoRV	GATATC	1 cut(s)	1270
EcoT14I	CCWWGG	2 cut(s)	492, 1559
EcoT22I	ATGCAT	2 cut(s)	1214, 1434
EcoT38I	GRGCYC	3 cut(s)	801, 2185, 2613
ErhI	CCWWGG	2 cut(s)	492, 1559
FalI	AAGNNNNNCTT	4 cut(s)	2309, 2341, 2570, 2602
FaqI	GGGAC	1 cut(s)	1417
FauI	CCCGC	4 cut(s)	62, 195, 232, 398
FauNDI	CATATG	1 cut(s)	2550
FbaI	TGATCA	1 cut(s)	1936
FblI	GTMKAC	3 cut(s)	696, 2205, 2414
FokI	GGATG	6 cut(s)	401, 979, 1528, 1535, 1703, 2472
FriOI	GRGCYC	3 cut(s)	801, 2185, 2613
FspBI	CTAG	1 cut(s)	1769
GlaI	GCGC	5 cut(s)	515, 862, 864, 2216, 2682
GsaI	CCCAGC	4 cut(s)	387, 660, 1172, 1791
GsuI	CTGGAG	2 cut(s)	343, 665
HaeII	RGCGCY	1 cut(s)	2218
HaeIII	GGCC	7 cut(s)	183, 243, 261, 436, 1828, 2280, 2515
HapII	CCGG	5 cut(s)	171, 437, 2004, 2012, 2230
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	5 cut(s)	516, 863, 865, 2217, 2683
Hin1I	GRCGYC	1 cut(s)	369
Hin6I	GCGC	5 cut(s)	514, 861, 863, 2215, 2681
HinP1I	GCGC	5 cut(s)	514, 861, 863, 2215, 2681
HincII	GTYRAC	4 cut(s)	214, 574, 697, 1644
HindII	GTYRAC	4 cut(s)	214, 574, 697, 1644
HindIII	AAGCTT	1 cut(s)	1760
HpaII	CCGG	5 cut(s)	171, 437, 2004, 2012, 2230
HphI	GGTGA	6 cut(s)	497, 593, 928, 1531, 1759, 2332
Hpy188I	TCNGA	9 cut(s)	58, 278, 530, 733, 1504, 1576, 1653, 1690, 1983
Hpy188III	TCNNGA	6 cut(s)	326, 472, 1316, 1327, 2039, 2186
Hpy99I	CGWCG	1 cut(s)	1653
HpyCH4III	ACNGT	7 cut(s)	51, 840, 1094, 1449, 2123, 2487, 2665
HpyCH4IV	ACGT	2 cut(s)	353, 2411
HpyF10VI	GCNNNNNNNGC	8 cut(s)	107, 163, 442, 475, 520, 1183, 1429, 2289
HpyF3I	CTNAG	6 cut(s)	479, 663, 1245, 1488, 1980, 2040
HpySE526I	ACGT	2 cut(s)	353, 2411
Hsp92I	GRCGYC	1 cut(s)	369
HspAI	GCGC	5 cut(s)	514, 861, 863, 2215, 2681
KpnI	GGTACC	2 cut(s)	288, 1538
Ksp22I	TGATCA	1 cut(s)	1936
Kzo9I	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
LguI	GCTCTTC	3 cut(s)	1970, 2618, 2634
LmnI	GCTCC	9 cut(s)	228, 279, 733, 796, 1191, 1603, 1796, 2212, 2581
Lsp1109I	GCAGC	4 cut(s)	122, 392, 1618, 1987
LweI	GCATC	5 cut(s)	14, 465, 910, 1063, 1451
MabI	ACCWGGT	1 cut(s)	752
MaeI	CTAG	1 cut(s)	1769
MaeII	ACGT	2 cut(s)	353, 2411
MaeIII	GTNAC	5 cut(s)	542, 986, 2320, 2487, 2665
MalI	GATC	5 cut(s)	565, 1809, 1938, 2028, 2341
MbiI	CCGCTC	2 cut(s)	323, 2546
MboI	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
MfeI	CAATTG	3 cut(s)	114, 373, 1005
MflI	RGATCY	2 cut(s)	1807, 2339
MhlI	GDGCHC	7 cut(s)	336, 471, 801, 2185, 2236, 2586, 2613
MluCI	AATT	9 cut(s)	17, 34, 102, 114, 373, 1005, 1067, 1857, 1916
MlyI	GAGTC	5 cut(s)	491, 1115, 1639, 1694, 2250
MmeI	TCCRAC	7 cut(s)	36, 301, 541, 1023, 1631, 1668, 2091
Mph1103I	ATGCAT	2 cut(s)	1214, 1434
MseI	TTAA	4 cut(s)	1257, 1311, 2400, 2685
MslI	CAYNNNNRTG	3 cut(s)	620, 704, 2318
MspA1I	CMGCKG	4 cut(s)	69, 190, 383, 2102
MspI	CCGG	5 cut(s)	171, 437, 2004, 2012, 2230
MspR9I	CCNGG	8 cut(s)	171, 289, 754, 1401, 2013, 2230, 2231, 2277
MunI	CAATTG	3 cut(s)	114, 373, 1005
Mva1269I	GAATGC	1 cut(s)	1453
MvaI	CCWGG	4 cut(s)	289, 754, 1401, 2277
MvnI	CGCG	4 cut(s)	180, 366, 704, 863
MwoI	GCNNNNNNNGC	8 cut(s)	107, 163, 442, 475, 520, 1183, 1429, 2289
NciI	CCSGG	4 cut(s)	171, 2013, 2230, 2231
NdeI	CATATG	1 cut(s)	2550
NdeII	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
NlaIV	GGNNCC	4 cut(s)	286, 637, 1536, 2293
NmuCI	GTSAC	2 cut(s)	986, 2320
NsiI	ATGCAT	2 cut(s)	1214, 1434
NspI	RCATGY	3 cut(s)	625, 1212, 2648
OliI	CACNNNNGTG	1 cut(s)	2318
PaeI	GCATGC	1 cut(s)	2648
PaeR7I	CTCGAG	1 cut(s)	324
PagI	TCATGA	1 cut(s)	2185
PauI	GCGCGC	1 cut(s)	861
PceI	AGGCCT	1 cut(s)	2515
PciI	ACATGT	1 cut(s)	621
PciSI	GCTCTTC	3 cut(s)	1970, 2618, 2634
PctI	GAATGC	1 cut(s)	1453
PfeI	GAWTC	6 cut(s)	29, 150, 1496, 1571, 2145, 2393
Pfl23II	CGTACG	1 cut(s)	429
Ple19I	CGATCG	1 cut(s)	2029
PleI	GAGTC	5 cut(s)	491, 1114, 1639, 1693, 2250
PpsI	GAGTC	5 cut(s)	491, 1114, 1639, 1693, 2250
Ppu21I	YACGTR	1 cut(s)	2412
PscI	ACATGT	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	2133
Psp124BI	GAGCTC	2 cut(s)	801, 2613
Psp6I	CCWGG	4 cut(s)	287, 752, 1399, 2275
PspEI	GGTNACC	1 cut(s)	2320
PspFI	CCCAGC	4 cut(s)	383, 656, 1168, 1787
PspGI	CCWGG	4 cut(s)	287, 752, 1399, 2275
PspLI	CGTACG	1 cut(s)	429
PspN4I	GGNNCC	4 cut(s)	286, 637, 1536, 2293
PspPI	GGNCC	6 cut(s)	173, 241, 260, 434, 526, 1826
PsrI	GAACNNNNNNTAC	2 cut(s)	1976, 2008
PstI	CTGCAG	1 cut(s)	1846
PstNI	CAGNNNCTG	1 cut(s)	294
PsuI	RGATCY	2 cut(s)	1807, 2339
PteI	GCGCGC	1 cut(s)	861
PvuI	CGATCG	1 cut(s)	2029
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	9 cut(s)	286, 424, 431, 1101, 1536, 1872, 2010, 2097, 2265
RsaNI	GTAC	9 cut(s)	285, 423, 430, 1100, 1535, 1871, 2009, 2096, 2264
RseI	CAYNNNNRTG	3 cut(s)	620, 704, 2318
SacI	GAGCTC	2 cut(s)	801, 2613
SalI	GTCGAC	1 cut(s)	695
SapI	GCTCTTC	3 cut(s)	1970, 2618, 2634
SaqAI	TTAA	4 cut(s)	1257, 1311, 2400, 2685
Sau3AI	GATC	5 cut(s)	563, 1807, 1936, 2026, 2339
Sau96I	GGNCC	6 cut(s)	173, 241, 260, 434, 526, 1826
SchI	GAGTC	5 cut(s)	491, 1115, 1639, 1694, 2250
ScrFI	CCNGG	8 cut(s)	171, 289, 754, 1401, 2013, 2230, 2231, 2277
SduI	GDGCHC	7 cut(s)	336, 471, 801, 2185, 2236, 2586, 2613
SexAI	ACCWGGT	1 cut(s)	752
SfaNI	GCATC	5 cut(s)	14, 465, 910, 1063, 1451
SfcI	CTRYAG	3 cut(s)	550, 1077, 1842
Sfr274I	CTCGAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	173, 526
SlaI	CTCGAG	1 cut(s)	324
SmaI	CCCGGG	1 cut(s)	2231
SmiMI	CAYNNNNRTG	3 cut(s)	620, 704, 2318
SmlI	CTYRAG	6 cut(s)	324, 335, 470, 800, 1610, 1874
SmoI	CTYRAG	6 cut(s)	324, 335, 470, 800, 1610, 1874
SnaBI	TACGTA	1 cut(s)	2412
SphI	GCATGC	1 cut(s)	2648
Sse9I	AATT	9 cut(s)	17, 34, 102, 114, 373, 1005, 1067, 1857, 1916
SseBI	AGGCCT	1 cut(s)	2515
SspI	AATATT	2 cut(s)	727, 2601
SspMI	CTAG	1 cut(s)	1769
SstI	GAGCTC	2 cut(s)	801, 2613
StuI	AGGCCT	1 cut(s)	2515
StyD4I	CCNGG	8 cut(s)	169, 287, 752, 1399, 2011, 2228, 2229, 2275
StyI	CCWWGG	2 cut(s)	492, 1559
TaaI	ACNGT	7 cut(s)	51, 840, 1094, 1449, 2123, 2487, 2665
TaiI	ACGT	2 cut(s)	356, 2414
TaqI	TCGA	4 cut(s)	325, 696, 1665, 2616
TasI	AATT	9 cut(s)	17, 34, 102, 114, 373, 1005, 1067, 1857, 1916
TauI	GCSGC	7 cut(s)	160, 183, 323, 369, 2283, 2533, 2546
TfiI	GAWTC	6 cut(s)	29, 150, 1496, 1571, 2145, 2393
Tru1I	TTAA	4 cut(s)	1257, 1311, 2400, 2685
Tru9I	TTAA	4 cut(s)	1257, 1311, 2400, 2685
TscAI	CASTG	6 cut(s)	54, 1354, 1452, 2087, 2532, 2656
TseFI	GTSAC	2 cut(s)	986, 2320
TseI	GCWGC	4 cut(s)	110, 380, 1606, 2000
Tsp45I	GTSAC	2 cut(s)	986, 2320
TspDTI	ATGAA	9 cut(s)	13, 30, 800, 924, 1046, 1160, 1541, 2184, 2202
TspGWI	ACGGA	3 cut(s)	199, 732, 2579
TspMI	CCCGGG	1 cut(s)	2229
TspRI	CASTG	6 cut(s)	54, 1354, 1452, 2087, 2532, 2656
VpaK11BI	GGWCC	2 cut(s)	173, 526
XapI	RAATTY	2 cut(s)	17, 1916
XceI	RCATGY	3 cut(s)	625, 1212, 2648
XhoI	CTCGAG	1 cut(s)	324
XmaI	CCCGGG	1 cut(s)	2229
XmiI	GTMKAC	3 cut(s)	696, 2205, 2414
XspI	CTAG	1 cut(s)	1769
Zsp2I	ATGCAT	2 cut(s)	1214, 1434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.