Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012276.1

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

13178 .. 13558

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012276.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgtcgccgccgttgcctcctggtccccgtggcttcccactggttggtaaccttctgtcccttgactcagagctccattcctactttgctggcctagccaagacctacggcccaatctttaagctccgactgggtaccaggctctgcgtcgtaatagcctccccttccatcgctcgagaggtcctcaaggaccatgacaccacgttcgccaatcacggcgtcaatgttgtagctggggacgtcgcactctacggtggggcagatatagtttttgccccttacgggccggagtggagaatgatgaggaaagtgtgcgcgctcaagatgcttacactaccagaaaaaaggtcttttacggcccacaatgtgcgccgtaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

126

Amino Acids

13.81

Weight (kDa)

9.79

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccII	CGCG	1 cut(s)	317
AciI	CCGC	1 cut(s)	8
AcyI	GRCGYC	2 cut(s)	219, 240
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	44, 282
AjnI	CCWGG	2 cut(s)	19, 137
AluBI	AGCT	3 cut(s)	73, 124, 233
AluI	AGCT	3 cut(s)	73, 124, 233
Alw21I	GWGCWC	1 cut(s)	75
AlwNI	CAGNNNCTG	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	4 cut(s)	91, 109, 284, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	3 cut(s)	317, 319, 372
AspS9I	GGNCC	6 cut(s)	23, 110, 181, 190, 284, 358
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	3 cut(s)	23, 181, 190
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	4 cut(s)	124, 232, 357, 372
BciT130I	CCWGG	2 cut(s)	21, 139
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	21, 139
Bme18I	GGWCC	3 cut(s)	23, 181, 190
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	6 cut(s)	23, 110, 181, 190, 284, 358
BmiI	GGNNCC	2 cut(s)	25, 136
BmrFI	CCNGG	2 cut(s)	21, 139
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	140
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
BpuEI	CTTGAG	2 cut(s)	170, 305
BsaHI	GRCGYC	2 cut(s)	219, 240
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 282
Bse1I	ACTGG	2 cut(s)	45, 135
BseBI	CCWGG	2 cut(s)	21, 139
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	44, 282
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	45, 135
BsePI	GCGCGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	4 cut(s)	93, 111, 286, 359
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	3 cut(s)	9, 43, 251
BslI	CCNNNNNNNGG	2 cut(s)	44, 282
BsmFI	GGGAC	3 cut(s)	9, 43, 251
BsnI	GGCC	4 cut(s)	93, 111, 286, 359
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	4 cut(s)	93, 111, 286, 359
BspCNI	CTCAG	1 cut(s)	80
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	25, 136
BspT107I	GGYRCC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	45, 135
BssECI	CCNNGG	1 cut(s)	28
BssHII	GCGCGC	1 cut(s)	315
BssNI	GRCGYC	2 cut(s)	219, 240
Bst2UI	CCWGG	2 cut(s)	21, 139
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	219, 240
BstC8I	GCNNGC	2 cut(s)	91, 317
BstDEI	CTNAG	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	28
BstEII	GGTNACC	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	317
BstHHI	GCGC	3 cut(s)	317, 319, 372
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 95, 325
BstNI	CCWGG	2 cut(s)	21, 139
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	19, 137
BstUI	CGCG	1 cut(s)	317
BsuRI	GGCC	4 cut(s)	93, 111, 286, 359
BtgI	CCRYGG	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	91, 317
CaiI	CAGNNNCTG	1 cut(s)	144
CfoI	GCGC	3 cut(s)	317, 319, 372
Cfr13I	GGNCC	6 cut(s)	23, 110, 181, 190, 284, 358
CseI	GACGC	2 cut(s)	136, 208
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	194
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	67
DraIII	CACNNNGTG	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	3 cut(s)	23, 181, 190
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	174
Eco91I	GGTNACC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	19, 137
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	1 cut(s)	197
FaiI	YATR	2 cut(s)	195, 266
FaqI	GGGAC	3 cut(s)	9, 43, 251
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	95
GlaI	GCGC	3 cut(s)	316, 318, 371
GluI	GCNGC	1 cut(s)	8
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	93, 111, 286, 359
HapII	CCGG	1 cut(s)	287
HgaI	GACGC	2 cut(s)	136, 208
HhaI	GCGC	3 cut(s)	317, 319, 372
Hin1I	GRCGYC	2 cut(s)	219, 240
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	3 cut(s)	315, 317, 370
HinP1I	GCGC	3 cut(s)	315, 317, 370
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	70, 128
Hpy188III	TCNNGA	2 cut(s)	176, 322
Hpy99I	CGWCG	2 cut(s)	152, 245
HpyAV	CCTTC	2 cut(s)	62, 174
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	2 cut(s)	203, 240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 95, 325
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	2 cut(s)	203, 240
Hsp92I	GRCGYC	2 cut(s)	219, 240
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	3 cut(s)	315, 317, 370
KpnI	GGTACC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	78, 129
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	203, 240
MaeIII	GTNAC	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	5 cut(s)	27, 169, 172, 194, 297
MseI	TTAA	1 cut(s)	120
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	21, 139
MvaI	CCWGG	2 cut(s)	21, 139
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	13, 95, 325
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	25, 136
PaeR7I	CTCGAG	1 cut(s)	174
PauI	GCGCGC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	181
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	19, 137
PspEI	GGTNACC	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	19, 137
PspN4I	GGNNCC	2 cut(s)	25, 136
PspPI	GGNCC	6 cut(s)	23, 110, 181, 190, 284, 358
PspPPI	RGGWCCY	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	144
PteI	GCGCGC	1 cut(s)	315
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	8
Sau96I	GGNCC	6 cut(s)	23, 110, 181, 190, 284, 358
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	21, 139
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	9 cut(s)	54, 75, 107, 126, 183, 206, 235, 243, 350
SfaNI	GCATC	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	3 cut(s)	23, 181, 190
SlaI	CTCGAG	1 cut(s)	174
SmlI	CTYRAG	3 cut(s)	174, 185, 320
SmoI	CTYRAG	3 cut(s)	174, 185, 320
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	19, 137
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	2 cut(s)	206, 243
TaqI	TCGA	1 cut(s)	175
TauI	GCSGC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	45
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	23, 181, 190
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	1 cut(s)	95
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.