Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Reverse (-)

7924421 .. 7926934

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g05480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCTGAGGAAAGTTTGCGTGCAAAAAATGCTCAGCAACACCACTCTTGACTCTGTGTACGCGCTCCGGCGGAAACAGCTCCGACGGACCGTCGGGTACTTCTACGATCGGATCGGATCGCCGGTCAACGTGGGGGAGCAGATGTTCCTGAACGTGATGAATGTTATTACAAACATGCTGTGGGGCGGGACCGTGCAGGGAGACGAGAAGGCGGGGCTCGCGGCGGAGTATCGGGAAGTGGTGTCGGAGATGACTGTGCTTTTGGGGAAGCCGAATGTTTCGGACTTTTATCCGGGATTGGCCAGGTTTGATTTGCAAGGGGTGGTGAAGAAGATGGGCTGGTTGGCCCGGAGGTTTGATGGGATATTTGAGAAAATAATAGATCAACGGCTGAGGATTGACAAGGAAGGGGAGGAGGGGAATAAGGATTTTTTGACGTTTTTGTTGAAGTTGAAGGAGGAAGGAGGAGATTCCAAGACGCCCTTCACCATGACTCATCTCAAAGCCTTGCTCATGGGTGGTGGGTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

178

Amino Acids

20.11

Weight (kDa)

9.16

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 172	6.7e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	62, 221
AciI	CCGC	5 cut(s)	70, 186, 212, 221, 224
AclWI	GGATC	2 cut(s)	119, 124
AcoI	YGGCCR	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	2 cut(s)	59, 98
AgsI	TTSAA	2 cut(s)	448, 454
AhdI	GACNNNNNGTC	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	119, 124
AoxI	GGCC	2 cut(s)	300, 345
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	87, 189, 346
AsuC2I	CCSGG	2 cut(s)	294, 349
AsuHPI	GGTGA	2 cut(s)	337, 478
AvaII	GGWCC	2 cut(s)	87, 189
BalI	TGGCCA	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	219
BbvCI	CCTCAGC	2 cut(s)	5, 392
BccI	CCATC	2 cut(s)	328, 353
BceAI	ACGGC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	294, 349
BcoDI	GTCTC	1 cut(s)	195
BisI	GCNGC	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	3 cut(s)	294, 304, 349
Bme18I	GGWCC	2 cut(s)	87, 189
BmeRI	GACNNNNNGTC	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	87, 189, 346
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	3 cut(s)	294, 304, 349
Bpu10I	CCTNAGC	2 cut(s)	5, 392
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	294, 349
BsaHI	GRCGYC	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse118I	RCCGGY	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	46, 383
BseRI	GAGGAG	2 cut(s)	428, 480
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	62, 221
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	302, 347
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	4 cut(s)	67, 122, 293, 349
BslFI	GGGAC	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	302, 347
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	106, 111, 116, 382
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	5 cut(s)	70, 186, 212, 221, 224
BspANI	GGCC	2 cut(s)	302, 347
BspCNI	CTCAG	2 cut(s)	45, 384
BspFNI	CGCG	2 cut(s)	62, 221
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	119, 124
BsrFI	RCCGGY	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	4 cut(s)	106, 111, 116, 382
BssNI	GRCGYC	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	91, 193, 256
BstACI	GRCGYC	1 cut(s)	479
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	20, 219
BstDEI	CTNAG	3 cut(s)	5, 32, 392
BstFNI	CGCG	2 cut(s)	62, 221
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	109, 114, 119, 385
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	106, 111, 116, 382
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 76, 218
BstNI	CCWGG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	3 cut(s)	292, 302, 347
BstUI	CGCG	2 cut(s)	62, 221
BsuRI	GGCC	2 cut(s)	302, 347
Cac8I	GCNNGC	2 cut(s)	20, 219
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	87, 189, 346
CpoI	CGGWCCG	1 cut(s)	87
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	58, 97
CspI	CGGWCCG	1 cut(s)	87
CviAII	CATG	3 cut(s)	175, 490, 514
CviJI	RGCY	8 cut(s)	79, 217, 271, 302, 339, 347, 391, 506
CviKI_1	RGCY	8 cut(s)	79, 217, 271, 302, 339, 347, 391, 506
CviQI	GTAC	2 cut(s)	58, 97
DdeI	CTNAG	3 cut(s)	5, 32, 392
DpnI	GATC	4 cut(s)	108, 113, 118, 384
DpnII	GATC	4 cut(s)	106, 111, 116, 382
DriI	GACNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	300
Eam1105I	GACNNNNNGTC	1 cut(s)	89
EciI	GGCGGA	2 cut(s)	85, 239
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	87, 189
EcoRII	CCWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	3 cut(s)	178, 493, 517
FaiI	YATR	3 cut(s)	176, 491, 515
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	3 cut(s)	174, 489, 513
FauI	CCCGC	2 cut(s)	179, 205
Fnu4HI	GCNGC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	302, 347
HapII	CCGG	4 cut(s)	67, 122, 293, 349
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	178, 493, 517
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	50, 470, 493
HpaII	CCGG	4 cut(s)	67, 122, 293, 349
HphI	GGTGA	2 cut(s)	337, 478
Hpy166II	GTNNAC	2 cut(s)	58, 127
Hpy188I	TCNGA	5 cut(s)	83, 111, 116, 247, 283
Hpy188III	TCNNGA	3 cut(s)	47, 148, 233
Hpy8I	GTNNAC	2 cut(s)	58, 127
Hpy99I	CGWCG	2 cut(s)	87, 95
HpyAV	CCTTC	5 cut(s)	202, 401, 448, 455, 493
HpyCH4III	ACNGT	3 cut(s)	91, 193, 256
HpyCH4IV	ACGT	3 cut(s)	129, 153, 437
HpyCH4V	TGCA	3 cut(s)	22, 196, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 76, 218
HpyF3I	CTNAG	3 cut(s)	5, 32, 392
HpySE526I	ACGT	3 cut(s)	129, 153, 437
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	178, 493, 517
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	4 cut(s)	106, 111, 116, 382
LmnI	GCTCC	3 cut(s)	69, 84, 136
LpnPI	CCDG	9 cut(s)	80, 135, 161, 182, 289, 306, 316, 325, 362
MaeII	ACGT	3 cut(s)	129, 153, 437
MalI	GATC	4 cut(s)	108, 113, 118, 384
MboI	GATC	4 cut(s)	106, 111, 116, 382
MboII	GAAGA	2 cut(s)	340, 343
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	44, 487
MmeI	TCCRAC	2 cut(s)	106, 225
MnlI	CCTC	6 cut(s)	345, 387, 406, 409, 451, 458
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	4 cut(s)	67, 122, 293, 349
MspR9I	CCNGG	3 cut(s)	294, 304, 349
MvaI	CCWGG	1 cut(s)	304
MvnI	CGCG	2 cut(s)	62, 221
MwoI	GCNNNNNNNGC	3 cut(s)	28, 76, 218
NciI	CCSGG	2 cut(s)	294, 349
NdeII	GATC	4 cut(s)	106, 111, 116, 382
NlaIII	CATG	3 cut(s)	178, 493, 517
NlaIV	GGNNCC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	223
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	2 cut(s)	44, 487
PpsI	GAGTC	2 cut(s)	44, 487
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	87, 189, 346
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	59, 98
RsaNI	GTAC	2 cut(s)	58, 97
Rsr2I	CGGWCCG	1 cut(s)	87
RsrII	CGGWCCG	1 cut(s)	87
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	4 cut(s)	106, 111, 116, 382
Sau96I	GGNCC	3 cut(s)	87, 189, 346
SchI	GAGTC	2 cut(s)	44, 487
ScrFI	CCNGG	3 cut(s)	294, 304, 349
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	81, 132, 156, 308, 356, 440
SinI	GGWCC	2 cut(s)	87, 189
SsiI	CCGC	5 cut(s)	70, 186, 212, 221, 224
StyD4I	CCNGG	3 cut(s)	292, 302, 347
TaaI	ACNGT	3 cut(s)	91, 193, 256
TaiI	ACGT	3 cut(s)	132, 156, 440
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	470
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	87, 189
XceI	RCATGY	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.