Rmu_ssc0000125.1_g000026

Polygalacturonase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000125.1
OG0000377
Physical Location & Seq
Reverse (-)
94021 .. 100511
6491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000125.1_g000026.1.cds

Sequence Viewer

Length: 891 bp
atgcctggttttgtggccggagatggccgaaattggaagaaatcaacgattgaaaccgactgctacagtaaagtttggaagcccgatttgcgaaatttcggccaaatcgttgtgaatcaccaccgtaggcatgtcaagggggaggaggagcgtcatcctatgccttgggttcgtcatttgggtggccggaaatcaaagggaggccgaagggaagagagagctcggggaagaagagagagttaccgagctggggtggatttccgaaaatggaaatctaccaacagttacgttgatgggaatgttgcggctcctgccaatattaatgaatggagagcgtatgaattagagggcttgctgtgcttccaagaagtgaacggtctcattatcaatggagcaggactcgtagatggcaagggatcaacatggtggagcagcaaatctaattttattgacactacagatggaaataacggttgccaagtacctgcgcttttgcacctccacaaatgtaacaaccttaacctaaatggagttcgttctaaagacagcccaggaatccatgtagttatacatgagtgtactggtccatcactccctcactctcatctttctctctctgtcaaaagcttcgagaaatctcaaaccattaccagctcctccgccaaaatcaagtcactctccgtctccgagatcacatcccctcagctctccaacctctcaattgtcaaatccgcctccaccttcgccttcatctccgccttcgccagtgagccatcggaggcggagctccataagttcggtgtctccaacgatatcagagactttgtcaagggactcacttccaaattttttgattcagttcttcaaatgcccaccatttcgatcgaatag

Protein Analysis

296

Amino Acids

32.85

Weight (kDa)

9.34

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AciI CCGC 5 cut(s) 305, 660, 732, 756, 782
AclWI GGATC 1 cut(s) 424
AcoI YGGCCR 4 cut(s) 15, 25, 100, 184
AcsI RAATTY 2 cut(s) 94, 845
AfaI GTAC 2 cut(s) 483, 580
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 53, 866
AjnI CCWGG 2 cut(s) 4, 550
AluBI AGCT 6 cut(s) 221, 248, 627, 654, 706, 787
AluI AGCT 6 cut(s) 221, 248, 627, 654, 706, 787
Alw21I GWGCWC 2 cut(s) 223, 789
Alw26I GTCTC 4 cut(s) 383, 688, 808, 813
AlwI GGATC 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 5 cut(s) 15, 25, 100, 184, 202
ApeKI GCWGC 1 cut(s) 432
ApoI RAATTY 2 cut(s) 94, 845
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 1 cut(s) 584
BanII GRGCYC 2 cut(s) 223, 789
Bbv12I GWGCWC 2 cut(s) 223, 789
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 1 cut(s) 444
BccI CCATC 6 cut(s) 17, 287, 401, 455, 595, 781
BciT130I CCWGG 2 cut(s) 6, 552
BcoDI GTCTC 4 cut(s) 383, 688, 808, 813
BfmI CTRYAG 2 cut(s) 64, 456
BfuAI ACCTGC 1 cut(s) 493
BisI GCNGC 2 cut(s) 306, 433
BlsI GCNGC 2 cut(s) 307, 434
Bme1390I CCNGG 2 cut(s) 6, 552
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 2 cut(s) 6, 552
BplI GAGNNNNNCTC 2 cut(s) 384, 416
Bpu10I CCTNAGC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 164, 550
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 586, 765
BseBI CCWGG 2 cut(s) 6, 552
BseDI CCNNGG 2 cut(s) 164, 550
BseGI GGATG 2 cut(s) 154, 695
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 716
BseNI ACTGG 2 cut(s) 586, 765
BseRI GAGGAG 3 cut(s) 158, 161, 646
BseXI GCAGC 1 cut(s) 444
BseYI CCCAGC 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 885
BshFI GGCC 5 cut(s) 17, 27, 102, 186, 204
BsiEI CGRYCG 1 cut(s) 885
BsiHKAI GWGCWC 2 cut(s) 223, 789
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 2 cut(s) 18, 187
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 4 cut(s) 383, 688, 808, 813
BsmBI CGTCTC 1 cut(s) 688
BsmFI GGGAC 1 cut(s) 846
BsnI GGCC 5 cut(s) 17, 27, 102, 186, 204
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 223, 789
Bsp143I GATC 3 cut(s) 416, 690, 882
BspACI CCGC 5 cut(s) 305, 660, 732, 756, 782
BspANI GGCC 5 cut(s) 17, 27, 102, 186, 204
BspCNI CTCAG 1 cut(s) 715
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 2 cut(s) 586, 765
BssECI CCNNGG 2 cut(s) 164, 550
BssMI GATC 3 cut(s) 416, 690, 882
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 6, 552
Bst4CI ACNGT 5 cut(s) 68, 125, 284, 377, 473
Bst6I CTCTTC 2 cut(s) 207, 226
BstC8I GCNNGC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 702
BstF5I GGATG 2 cut(s) 154, 695
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 3 cut(s) 419, 693, 885
BstMAI GTCTC 4 cut(s) 383, 688, 808, 813
BstMBI GATC 3 cut(s) 416, 690, 882
BstMCI CGRYCG 1 cut(s) 885
BstMWI GCNNNNNNNGC 3 cut(s) 88, 311, 357
BstNI CCWGG 2 cut(s) 6, 552
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 4, 550
BstSFI CTRYAG 2 cut(s) 64, 456
BstV1I GCAGC 1 cut(s) 444
BsuRI GGCC 5 cut(s) 17, 27, 102, 186, 204
BtsCI GGATG 2 cut(s) 154, 695
BtsIMutI CAGTG 1 cut(s) 772
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 1 cut(s) 353
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 584
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 482, 579
CviAII CATG 4 cut(s) 131, 423, 560, 572
CviQI GTAC 2 cut(s) 482, 579
DdeI CTNAG 1 cut(s) 702
DpnI GATC 3 cut(s) 418, 692, 884
DpnII GATC 3 cut(s) 416, 690, 882
EaeI YGGCCR 4 cut(s) 15, 25, 100, 184
Eam1104I CTCTTC 2 cut(s) 207, 226
EarI CTCTTC 2 cut(s) 207, 226
EciI GGCGGA 4 cut(s) 649, 721, 745, 797
Ecl136II GAGCTC 2 cut(s) 221, 787
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 2 cut(s) 223, 789
Eco31I GGTCTC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 584
Eco53kI GAGCTC 2 cut(s) 221, 787
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 2 cut(s) 221, 787
EcoRII CCWGG 2 cut(s) 4, 550
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 2 cut(s) 223, 789
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 688
FaeI CATG 4 cut(s) 134, 426, 563, 575
FaiI YATR 8 cut(s) 132, 161, 339, 424, 561, 569, 573, 792
FaqI GGGAC 1 cut(s) 846
FatI CATG 4 cut(s) 130, 422, 559, 571
Fnu4HI GCNGC 2 cut(s) 306, 433
FokI GGATG 2 cut(s) 141, 682
FriOI GRGCYC 2 cut(s) 223, 789
Fsp4HI GCNGC 2 cut(s) 306, 433
GlaI GCGC 1 cut(s) 489
GluI GCNGC 2 cut(s) 306, 433
GsaI CCCAGC 1 cut(s) 252
HaeIII GGCC 5 cut(s) 17, 27, 102, 186, 204
HapII CCGG 2 cut(s) 18, 187
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 490
Hin1II CATG 4 cut(s) 134, 426, 563, 575
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 5 cut(s) 115, 399, 555, 834, 854
HpaII CCGG 2 cut(s) 18, 187
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 373, 579
Hpy188I TCNGA 4 cut(s) 263, 688, 778, 818
Hpy188III TCNNGA 1 cut(s) 631
Hpy8I GTNNAC 2 cut(s) 373, 579
HpyAV CCTTC 4 cut(s) 201, 751, 757, 769
HpyCH4III ACNGT 5 cut(s) 68, 125, 284, 377, 473
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 311, 357
HpyF3I CTNAG 1 cut(s) 702
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 4 cut(s) 134, 426, 563, 575
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 3 cut(s) 416, 690, 882
LmnI GCTCC 7 cut(s) 148, 313, 392, 429, 659, 784, 792
Lsp1109I GCAGC 1 cut(s) 444
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 4 cut(s) 239, 284, 509, 672
MalI GATC 3 cut(s) 418, 692, 884
MboI GATC 3 cut(s) 416, 690, 882
MboII GAAGA 5 cut(s) 49, 224, 240, 243, 854
MfeI CAATTG 1 cut(s) 720
MhlI GDGCHC 2 cut(s) 223, 789
MluCI AATT 6 cut(s) 31, 94, 341, 442, 720, 845
MlyI GAGTC 2 cut(s) 393, 828
MmeI TCCRAC 2 cut(s) 735, 831
MseI TTAA 2 cut(s) 321, 519
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 2 cut(s) 18, 187
MspR9I CCNGG 2 cut(s) 6, 552
MunI CAATTG 1 cut(s) 720
MvaI CCWGG 2 cut(s) 6, 552
MwoI GCNNNNNNNGC 3 cut(s) 88, 311, 357
NdeII GATC 3 cut(s) 416, 690, 882
NlaIII CATG 4 cut(s) 134, 426, 563, 575
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 672
NspI RCATGY 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 3 cut(s) 115, 555, 854
PflFI GACNNNGTC 1 cut(s) 824
PkrI GCNGC 2 cut(s) 307, 434
Ple19I CGATCG 1 cut(s) 885
PleI GAGTC 2 cut(s) 393, 828
PpsI GAGTC 2 cut(s) 393, 828
PshBI ATTAAT 1 cut(s) 321
Psp124BI GAGCTC 2 cut(s) 223, 789
Psp6I CCWGG 2 cut(s) 4, 550
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 2 cut(s) 4, 550
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 584
PsyI GACNNNGTC 1 cut(s) 824
PvuI CGATCG 1 cut(s) 885
RsaI GTAC 2 cut(s) 483, 580
RsaNI GTAC 2 cut(s) 482, 579
RseI CAYNNNNRTG 1 cut(s) 180
SacI GAGCTC 2 cut(s) 223, 789
SaqAI TTAA 2 cut(s) 321, 519
SatI GCNGC 2 cut(s) 306, 433
Sau3AI GATC 3 cut(s) 416, 690, 882
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 2 cut(s) 393, 828
ScrFI CCNGG 2 cut(s) 6, 552
SduI GDGCHC 2 cut(s) 223, 789
SfcI CTRYAG 2 cut(s) 64, 456
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 6 cut(s) 31, 94, 341, 442, 720, 845
SsiI CCGC 5 cut(s) 305, 660, 732, 756, 782
SspI AATATT 1 cut(s) 319
SstI GAGCTC 2 cut(s) 223, 789
StyD4I CCNGG 2 cut(s) 4, 550
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 5 cut(s) 68, 125, 284, 377, 473
TaiI ACGT 1 cut(s) 291
TaqI TCGA 3 cut(s) 630, 881, 885
TasI AATT 6 cut(s) 31, 94, 341, 442, 720, 845
TatI WGTACW 1 cut(s) 578
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 3 cut(s) 115, 555, 854
Tru1I TTAA 2 cut(s) 321, 519
Tru9I TTAA 2 cut(s) 321, 519
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 1 cut(s) 672
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 3 cut(s) 339, 354, 739
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 1 cut(s) 772
Tth111I GACNNNGTC 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 584
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 2 cut(s) 94, 845
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.