Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8316029.1

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 344

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8316029.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 238 bp

tgggagtgacttcaagtattttccttttgggtccgggagaagaatatgtgcagggatagcattggctgaccggatggtgaagcgttcgcttgctacaatgctgcattcttttgattggaaattgccacagggtgagaagttggatctttcggagaagtttggtattgtattgaagaagaagatatctttggttggcatcccaactccaaggttatccgatccagcactctatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

78

Amino Acids

8.71

Weight (kDa)

9.66

Isoelectric Point (pI)

25.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	151, 213
AdeI	CACNNNGTG	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	14, 173
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AlwI	GGATC	2 cut(s)	151, 213
ApeKI	GCWGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	89, 144
AvaII	GGWCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	2 cut(s)	79, 196
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	34, 71
BsmI	GAATGC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	143, 218
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	151, 213
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	143, 218
BssT1I	CCWWGG	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	79, 196
BstKTI	GATC	2 cut(s)	146, 221
BstMBI	GATC	2 cut(s)	143, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	79, 196
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	31
CviJI	RGCY	1 cut(s)	66
CviKI_1	RGCY	1 cut(s)	66
DpnI	GATC	2 cut(s)	145, 220
DpnII	GATC	2 cut(s)	143, 218
DraIII	CACNNNGTG	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaiI	YATR	2 cut(s)	47, 232
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	2 cut(s)	86, 183
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HapII	CCGG	2 cut(s)	34, 71
HpaII	CCGG	2 cut(s)	34, 71
HphI	GGTGA	2 cut(s)	89, 144
Hpy188I	TCNGA	2 cut(s)	152, 218
HpyCH4V	TGCA	2 cut(s)	51, 104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	143, 218
LpnPI	CCDG	4 cut(s)	37, 47, 84, 114
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	2 cut(s)	145, 220
MboI	GATC	2 cut(s)	143, 218
MboII	GAAGA	4 cut(s)	52, 185, 188, 191
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	121
MspI	CCGG	2 cut(s)	34, 71
MspR9I	CCNGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	143, 218
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	143
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	143, 218
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	205
SgeI	CNNG	9 cut(s)	26, 46, 47, 64, 83, 102, 141, 220, 234
SinI	GGWCC	1 cut(s)	31
Sse9I	AATT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	207
TasI	AATT	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	6
VpaK11BI	GGWCC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.