Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000377

Physical Location & Seq

Genomic Coordinates Reverse (-)

31016359 .. 31016757

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1257600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCTGAGGAAAGTTTACGTGCTGAAAATGCTCAGCAACACCACTCTTGACTCGGTGTACGCGCTCCAGGAGAAACAGCTCCGACGGACCGTCCGGTACTTCTACGATCGGATCGGATCGCCGATCAACGTGGGGGAGCAAATGTTCCTGAACGTGATGAATGTTATTACGAACATGCTGTGGGGTGGGATCATGCAGGGAGACGAGAAGGCGGGGCTCGGGGCGGAGTTTCGGGAAGTGGTGTCGGAGATGACGGAGCTTTTGGGGAAGCCGAATGTTTCGGACTTTTATCCGGGTTTGGCCAGGTTTGATTTGCAAGGGGTGGTGAAGAAGATGGGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0016020 GO:0019748 GO:0042221 GO:0044550 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

115

Amino Acids

13.04

Weight (kDa)

8.96

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12300 AT4G12310 AT4G12320 AT4G12330 AT4G22690 AT4G22710 AT5G44620
fragaria_vesca	FvH4_3g36340 FvH4_4g05231 FvH4_5g00500 FvH4_5g00510 FvH4_7g17980
malus_domestica	MD02G1257600.v1.1 MD04G1080300.v1.1 MD06G1075700.v1.1
prunus_persica	Prupe.1G090700_v2.0.a1 Prupe.5G071500_v2.0.a1 Prupe.5G077600_v2.0.a1 Prupe.5G077700_v2.0.a1 Prupe.5G077800_v2.0.a1 Prupe.5G077900_v2.0.a1 Prupe.5G078100_v2.0.a1 Prupe.5G078200_v2.0.a1 Prupe.5G078300_v2.0.a1
pyrus_communis	pycom04g07220 pycom04g07240 pycom06g05480 pycom15g15400
rosa_chinensis	RchiOBHm_Chr5g0018741 RchiOBHm_Chr6g0248821 RchiOBHm_Chr7g0178901 RchiOBHm_Chr7g0201891 RchiOBHm_Chr7g0201961 RchiOBHm_Chr7g0201971 RchiOBHm_Chr7g0201981 RchiOBHm_Chr7g0201991 RchiOBHm_Chr7g0202001
rosa_laevigata	RLG00000003634 RLG00000003636 RLG00000003637 RLG00000003638 RLG00000003644
rosa_multiflora	Rmu_co8316029.1_g000001 Rmu_sc0000637.1_g000020 Rmu_sc0000637.1_g000025 Rmu_sc0000637.1_g000027 Rmu_sc0001030.1_g000027 Rmu_sc0006420.1_g000002 Rmu_sc0012276.1_g000002 Rmu_sc0012276.1_g000005 Rmu_sc0012276.1_g000011 Rmu_sc0012276.1_g000012 Rmu_sc0012276.1_g000017 Rmu_sc0014024.1_g000001 Rmu_ssc0000125.1_g000026
rosa_roxburghii	Rroxscaffold_2G00077750 Rroxscaffold_2G00113690 Rroxscaffold_3G00254960 Rroxscaffold_3G00254970 Rroxscaffold_3G00254980 Rroxscaffold_3G00255010 Rroxscaffold_3G00255020 Rroxscaffold_5G00357760 Rroxscaffold_5G00357810
rosa_rugosa	Rorug05G0288400 Rorug05G0288500 Rorug07G0066500 Rorug07G0066700 Rorug07G0066800 Rorug07G0066800 Rorug07G0066900 Rorug07G0066900 Rorug07G0067000 Rorug07G0067100 Rorug07G0067200.1
rosa_samantha	Rh3DG308900 Rh4AG183200 Rh4CG451700 Rh5BG064200 Rh7AG193800 Rh7AG194000 Rh7AG194300 Rh7AG194400 Rh7BG195400 Rh7BG195600 Rh7BG195700 Rh7BG195800 Rh7BG195900 Rh7CG205300 Rh7CG205500 Rh7CG205600 Rh7CG205700 Rh7DG020100 Rh7DG199900 Rh7DG200600 Rh7DG200700 Rh7DG200900 Rh7DG201000 Rh7DG201100
rosa_wichuraiana	Rw7G016940 Rw7G016980 Rw7G016990 Rw7G017010 Rw7G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	212, 224
AclWI	GGATC	3 cut(s)	119, 124, 197
AcoI	YGGCCR	1 cut(s)	300
AfaI	GTAC	2 cut(s)	59, 98
AhdI	GACNNNNNGTC	1 cut(s)	89
AjnI	CCWGG	2 cut(s)	66, 302
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	2 cut(s)	79, 259
AluI	AGCT	2 cut(s)	79, 259
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	3 cut(s)	119, 124, 197
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	244, 276
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	5
BccI	CCATC	2 cut(s)	328, 333
BciT130I	CCWGG	2 cut(s)	68, 304
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	195
BlpI	GCTNAGC	1 cut(s)	32
Bme1390I	CCNGG	3 cut(s)	68, 294, 304
Bme18I	GGWCC	1 cut(s)	87
BmeRI	GACNNNNNGTC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	87
BmrFI	CCNGG	3 cut(s)	68, 294, 304
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	5
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
BseBI	CCWGG	2 cut(s)	68, 304
BseGI	GGATG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	94, 293
BsmAI	GTCTC	1 cut(s)	195
BsmBI	CGTCTC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	5 cut(s)	106, 111, 116, 123, 189
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	2 cut(s)	212, 224
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	62
BspPI	GGATC	3 cut(s)	119, 124, 197
BssMI	GATC	5 cut(s)	106, 111, 116, 123, 189
Bst2UI	CCWGG	2 cut(s)	68, 304
Bst4CI	ACNGT	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	5, 32
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	5 cut(s)	109, 114, 119, 126, 192
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	5 cut(s)	106, 111, 116, 123, 189
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	2 cut(s)	68, 304
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	3 cut(s)	66, 292, 302
BstUI	CGCG	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	87
CpoI	CGGWCCG	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	58, 97
CspI	CGGWCCG	1 cut(s)	87
CviAII	CATG	2 cut(s)	175, 193
CviJI	RGCY	5 cut(s)	79, 217, 259, 271, 302
CviKI_1	RGCY	5 cut(s)	79, 217, 259, 271, 302
CviQI	GTAC	2 cut(s)	58, 97
DdeI	CTNAG	2 cut(s)	5, 32
DpnI	GATC	5 cut(s)	108, 113, 118, 125, 191
DpnII	GATC	5 cut(s)	106, 111, 116, 123, 189
DriI	GACNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	300
Eam1105I	GACNNNNNGTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	66, 302
EcoT38I	GRGCYC	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	2 cut(s)	178, 196
FaiI	YATR	2 cut(s)	176, 194
FatI	CATG	2 cut(s)	174, 192
FauI	CCCGC	1 cut(s)	205
FriOI	GRGCYC	1 cut(s)	219
GlaI	GCGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	2 cut(s)	94, 293
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	178, 196
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	2 cut(s)	94, 293
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	16, 58
Hpy188I	TCNGA	5 cut(s)	83, 111, 116, 247, 283
Hpy188III	TCNNGA	3 cut(s)	47, 148, 233
Hpy8I	GTNNAC	2 cut(s)	16, 58
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	3 cut(s)	18, 129, 153
HpyCH4V	TGCA	2 cut(s)	196, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	2 cut(s)	5, 32
HpySE526I	ACGT	3 cut(s)	18, 129, 153
Hsp92II	CATG	2 cut(s)	178, 196
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	5 cut(s)	106, 111, 116, 123, 189
LmnI	GCTCC	4 cut(s)	69, 84, 136, 256
LpnPI	CCDG	8 cut(s)	53, 80, 107, 161, 182, 289, 306, 316
MaeII	ACGT	3 cut(s)	18, 129, 153
MalI	GATC	5 cut(s)	108, 113, 118, 125, 191
MboI	GATC	5 cut(s)	106, 111, 116, 123, 189
MboII	GAAGA	2 cut(s)	340, 343
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	106, 225
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	2 cut(s)	94, 293
MspR9I	CCNGG	3 cut(s)	68, 294, 304
MvaI	CCWGG	2 cut(s)	68, 304
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	5 cut(s)	106, 111, 116, 123, 189
NlaIII	CATG	2 cut(s)	178, 196
NspI	RCATGY	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	66
Ple19I	CGATCG	1 cut(s)	109
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	66, 302
PspGI	CCWGG	2 cut(s)	66, 302
PspPI	GGNCC	1 cut(s)	87
PvuI	CGATCG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	59, 98
RsaNI	GTAC	2 cut(s)	58, 97
Rsr2I	CGGWCCG	1 cut(s)	87
RsrII	CGGWCCG	1 cut(s)	87
Sau3AI	GATC	5 cut(s)	106, 111, 116, 123, 189
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	68, 294, 304
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	21, 81, 132, 156, 261, 308
SinI	GGWCC	1 cut(s)	87
SsiI	CCGC	2 cut(s)	212, 224
StyD4I	CCNGG	3 cut(s)	66, 292, 302
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	3 cut(s)	21, 132, 156
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	100, 269
VpaK11BI	GGWCC	1 cut(s)	87
XceI	RCATGY	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.