Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

6672316 .. 6673175

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCATCACCTATCTCTTACCTCCTTGCAGTTTTCCTCTCACTCTTCTTCAACTTCCATGGAAGCAAAGCCAACTTTCCAGCCTCACCAAATTGCCCCATAACCAGTTGCAGTATTAATGGGCTTGAATTTCACTACCCTTTTTGGAAAATGGAGGACTCCGCCGCCGATCATTATTGTGGCTACCCTGGTTTTGGTATAAACTGCTCGGATCCTGGAGAGCCAATACTGGGTCTCCCAAATAATGACTCCTTCTATGTGAGAGACATAGACTTTACTCTATCCACCATCACCCTTGTTGACACTGACGTCGTCGATCAAAAATGCCCTAGGGCAACACACAGTATGAGCGTAGGCGCGCTCCCATTGGATTACTCCCCATTGGATGTCAACCTGAGCTTCCACTTCCACTGCAGTTTCTATGTTGATCCTCCTGTGACTCCCATAACGTGCTTGGGATCATATGGTACCGAAAAGTCTTATGTTTTCAAGGAGGGAGACGAACCAGAAGGGTTTGATTGGTCGGAAGATTGTGAGGAGAATGTGGTGGTGACTGTGAAAGAAACAGAGATAACTAGAAGTATTGCCATTAATGAGTTGAGTCGTGCATTTGGAGTGGCCATGAACAAAGGGTTCGTGCTTAACTGGACCATGGCTAAGGAGTGCGTTTCGTGTGAGACTAATGGTGGGTTCTGTGGCTACAACAACACTGCACGAGAGGTTCTGTGCTTTTGCAAAGATGGTCATGGTAGTATTGGTACCCCAAGCAATGGCCTCTGCAACAAAGGTACACGGTTTCTGACCTTAATCCTCTGTTACCCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

276

Amino Acids

30.27

Weight (kDa)

4.66

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	32 - 101	1.2e-13	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	151 - 248	1.7e-20	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AatII	GACGTC	1 cut(s)	312
Acc65I	GGTACC	2 cut(s)	467, 758
AccB1I	GGYRCC	2 cut(s)	467, 758
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccII	CGCG	1 cut(s)	359
AciI	CCGC	2 cut(s)	162, 165
AclWI	GGATC	4 cut(s)	206, 219, 422, 466
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	3 cut(s)	469, 760, 790
AfiI	CCNNNNNNNGG	3 cut(s)	194, 230, 770
AgsI	TTSAA	3 cut(s)	52, 128, 490
AjnI	CCWGG	2 cut(s)	187, 214
AluBI	AGCT	1 cut(s)	399
AluI	AGCT	1 cut(s)	399
Alw26I	GTCTC	4 cut(s)	239, 258, 492, 671
AlwI	GGATC	4 cut(s)	206, 219, 422, 466
AoxI	GGCC	2 cut(s)	618, 772
ApoI	RAATTY	1 cut(s)	128
AseI	ATTAAT	2 cut(s)	117, 591
Asp718I	GGTACC	2 cut(s)	467, 758
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	359, 361
AspS9I	GGNCC	1 cut(s)	648
AsuHPI	GGTGA	3 cut(s)	78, 283, 562
AvaII	GGWCC	1 cut(s)	648
AvrII	CCTAGG	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	620
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	2 cut(s)	467, 758
BauI	CACGAG	1 cut(s)	714
BccI	CCATC	2 cut(s)	296, 734
BciT130I	CCWGG	2 cut(s)	189, 216
BcoDI	GTCTC	4 cut(s)	239, 258, 492, 671
BfaI	CTAG	2 cut(s)	330, 576
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	1 cut(s)	165
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	189, 216
Bme18I	GGWCC	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	3 cut(s)	213, 469, 760
BmrFI	CCNGG	2 cut(s)	189, 216
BmrI	ACTGGG	1 cut(s)	239
BmuI	ACTGGG	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	2 cut(s)	395, 657
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	58, 187, 329, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 230, 770
Bse1I	ACTGG	3 cut(s)	105, 234, 650
Bse3DI	GCAATG	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	189, 216
BseDI	CCNNGG	4 cut(s)	58, 187, 329, 651
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	194, 230, 770
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	105, 234, 650
BsePI	GCGCGC	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	620, 774
BshNI	GGYRCC	2 cut(s)	467, 758
BslI	CCNNNNNNNGG	3 cut(s)	194, 230, 770
BsmAI	GTCTC	4 cut(s)	239, 258, 492, 671
BsmBI	CGTCTC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	620, 774
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	169, 211, 316, 427, 458
Bsp19I	CCATGG	2 cut(s)	58, 651
BspACI	CCGC	2 cut(s)	162, 165
BspANI	GGCC	2 cut(s)	620, 774
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	3 cut(s)	213, 469, 760
BspMAI	CTGCAG	1 cut(s)	416
BspPI	GGATC	4 cut(s)	206, 219, 422, 466
BspT107I	GGYRCC	2 cut(s)	467, 758
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	775
BsrI	ACTGG	3 cut(s)	105, 234, 650
BssECI	CCNNGG	4 cut(s)	58, 187, 329, 651
BssHII	GCGCGC	1 cut(s)	357
BssMI	GATC	5 cut(s)	169, 211, 316, 427, 458
BssNI	GRCGYC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	3 cut(s)	58, 329, 651
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	189, 216
Bst4CI	ACNGT	3 cut(s)	344, 556, 795
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	2 cut(s)	395, 657
BstDSI	CCRYGG	2 cut(s)	58, 651
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	359, 361
BstKTI	GATC	5 cut(s)	172, 214, 319, 430, 461
BstMAI	GTCTC	4 cut(s)	239, 258, 492, 671
BstMBI	GATC	5 cut(s)	169, 211, 316, 427, 458
BstNI	CCWGG	2 cut(s)	189, 216
BstSCI	CCNGG	2 cut(s)	187, 214
BstSFI	CTRYAG	1 cut(s)	412
BstUI	CGCG	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	620, 774
BtgI	CCRYGG	2 cut(s)	58, 651
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	2 cut(s)	409, 708
BtsIMutI	CAGTG	3 cut(s)	303, 409, 708
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	2 cut(s)	359, 361
Cfr13I	GGNCC	1 cut(s)	648
Csp6I	GTAC	3 cut(s)	468, 759, 789
CviAII	CATG	4 cut(s)	59, 622, 652, 746
CviQI	GTAC	3 cut(s)	468, 759, 789
DdeI	CTNAG	2 cut(s)	395, 657
DpnI	GATC	5 cut(s)	171, 213, 318, 429, 460
DpnII	GATC	5 cut(s)	169, 211, 316, 427, 458
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	151
Eco130I	CCWWGG	3 cut(s)	58, 329, 651
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	648
EcoRII	CCWGG	2 cut(s)	187, 214
EcoT14I	CCWWGG	3 cut(s)	58, 329, 651
ErhI	CCWWGG	3 cut(s)	58, 329, 651
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	4 cut(s)	62, 625, 655, 749
FatI	CATG	4 cut(s)	58, 621, 651, 745
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	330, 576
GlaI	GCGC	2 cut(s)	358, 360
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	620, 774
HhaI	GCGC	2 cut(s)	359, 361
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	4 cut(s)	62, 625, 655, 749
Hin6I	GCGC	2 cut(s)	357, 359
HinP1I	GCGC	2 cut(s)	357, 359
HincII	GTYRAC	2 cut(s)	301, 391
HindII	GTYRAC	2 cut(s)	301, 391
HinfI	GANTC	4 cut(s)	158, 248, 439, 601
HphI	GGTGA	3 cut(s)	78, 283, 562
Hpy166II	GTNNAC	3 cut(s)	301, 391, 791
Hpy188I	TCNGA	3 cut(s)	211, 526, 801
Hpy8I	GTNNAC	3 cut(s)	301, 391, 791
Hpy99I	CGWCG	2 cut(s)	314, 317
HpyAV	CCTTC	2 cut(s)	262, 503
HpyCH4III	ACNGT	3 cut(s)	344, 556, 795
HpyCH4IV	ACGT	2 cut(s)	309, 449
HpyCH4V	TGCA	7 cut(s)	29, 111, 414, 608, 713, 735, 780
HpyF3I	CTNAG	2 cut(s)	395, 657
HpySE526I	ACGT	2 cut(s)	309, 449
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	62, 625, 655, 749
HspAI	GCGC	2 cut(s)	357, 359
KpnI	GGTACC	2 cut(s)	471, 762
Kzo9I	GATC	5 cut(s)	169, 211, 316, 427, 458
LmnI	GCTCC	1 cut(s)	366
MaeI	CTAG	2 cut(s)	330, 576
MaeII	ACGT	2 cut(s)	309, 449
MaeIII	GTNAC	3 cut(s)	436, 550, 815
MalI	GATC	5 cut(s)	171, 213, 318, 429, 460
MboI	GATC	5 cut(s)	169, 211, 316, 427, 458
MboII	GAAGA	3 cut(s)	37, 40, 539
MflI	RGATCY	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	2 cut(s)	91, 128
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	4 cut(s)	152, 242, 433, 610
MmeI	TCCRAC	1 cut(s)	504
Mox20I	TGGCCA	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	4 cut(s)	117, 591, 642, 806
MslI	CAYNNNNRTG	1 cut(s)	177
Msp20I	TGGCCA	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	189, 216
MvaI	CCWGG	2 cut(s)	189, 216
MvnI	CGCG	1 cut(s)	359
NcoI	CCATGG	2 cut(s)	58, 651
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	5 cut(s)	169, 211, 316, 427, 458
NlaIII	CATG	4 cut(s)	62, 625, 655, 749
NlaIV	GGNNCC	3 cut(s)	213, 469, 760
NmuCI	GTSAC	2 cut(s)	436, 550
PauI	GCGCGC	1 cut(s)	357
PflFI	GACNNNGTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	770
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	4 cut(s)	152, 242, 433, 609
PpsI	GAGTC	4 cut(s)	152, 242, 433, 609
PshBI	ATTAAT	2 cut(s)	117, 591
Psp6I	CCWGG	2 cut(s)	187, 214
PspGI	CCWGG	2 cut(s)	187, 214
PspN4I	GGNNCC	3 cut(s)	213, 469, 760
PspPI	GGNCC	1 cut(s)	648
PstI	CTGCAG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	311
PteI	GCGCGC	1 cut(s)	357
RsaI	GTAC	3 cut(s)	469, 760, 790
RsaNI	GTAC	3 cut(s)	468, 759, 789
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	117, 591, 642, 806
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	5 cut(s)	169, 211, 316, 427, 458
Sau96I	GGNCC	1 cut(s)	648
SchI	GAGTC	4 cut(s)	152, 242, 433, 610
ScrFI	CCNGG	2 cut(s)	189, 216
SetI	ASST	9 cut(s)	13, 24, 312, 396, 401, 452, 723, 790, 806
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	91, 128
SsiI	CCGC	2 cut(s)	162, 165
SspMI	CTAG	2 cut(s)	330, 576
StyD4I	CCNGG	2 cut(s)	187, 214
StyI	CCWWGG	3 cut(s)	58, 329, 651
TaaI	ACNGT	3 cut(s)	344, 556, 795
TaiI	ACGT	2 cut(s)	312, 452
TaqI	TCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	91, 128
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	4 cut(s)	117, 591, 642, 806
Tru9I	TTAA	4 cut(s)	117, 591, 642, 806
TscAI	CASTG	3 cut(s)	310, 416, 715
TseFI	GTSAC	2 cut(s)	436, 550
Tsp45I	GTSAC	2 cut(s)	436, 550
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	3 cut(s)	310, 416, 715
Tth111I	GACNNNGTC	1 cut(s)	311
Van91I	CCANNNNNTGG	1 cut(s)	770
VpaK11BI	GGWCC	1 cut(s)	648
VspI	ATTAAT	2 cut(s)	117, 591
XapI	RAATTY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	2 cut(s)	330, 576
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.