Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000194.1

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Forward (+)

34393 .. 35232

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000194.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtcatctgctcgtttgtacctccttgcagctcttctctcactcttgttattcaactttcacggaagcaaagcccactttgtaccctcaacaaattgccccatatacaattgcggtaatagccctgattttcactaccctttttggaaaattgaagactccaccgccaatcaatattgtggttaccctggttttggtctcaattgctcagagtccggagagccaatactcagtctcccaaataatgactcctattatgtgaaggacataaactttattgattccaccatcacccttgttgacatcgacgtcttcgatcaacaatgccctagggcaagacacagtattagtgtaggcacgctcccattggattactcccctttggatgtgaacctgagcttctacttcaactgcacttcctttcctggtccttttaagcctcccataatctgcttgggaatatggggtaccaaaatgtcttatgttttcaaggagggagagcaaccagatgggtttgaatggtctgaaagttgtgaggagaatgtggtggtgactgtgatgaagactaaggagctttatattgatgagttgactggtgattttggagggcttatgaagcaggggtttgtgcttaactggaccacggcgaaggagtgcgcttcgtgtgagagtggtggtggtttgtgtgggtacaagtacaaccccactaaagctgatgagtttctctgcttctgcgagaagaaaggtatgccgtatgctcctttgttccttaatcctttcgtaactttaaaatctgcttgggcccagttttggtatgccttctgtttgggtcatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

279

Amino Acids

31.28

Weight (kDa)

4.84

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AatII	GACGTC	1 cut(s)	312
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	2 cut(s)	114, 165
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	5 cut(s)	20, 84, 469, 692, 698
AfiI	CCNNNNNNNGG	2 cut(s)	194, 810
AgsI	TTSAA	5 cut(s)	55, 155, 409, 490, 518
AjnI	CCWGG	2 cut(s)	187, 424
AluBI	AGCT	4 cut(s)	32, 399, 574, 713
AluI	AGCT	4 cut(s)	32, 399, 574, 713
Alw26I	GTCTC	2 cut(s)	203, 239
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	1 cut(s)	801
ApaI	GGGCCC	1 cut(s)	805
ApeKI	GCWGC	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	467
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	4 cut(s)	428, 639, 801, 802
AsuHPI	GGTGA	3 cut(s)	283, 562, 608
AvaII	GGWCC	2 cut(s)	428, 639
AvrII	CCTAGG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	805
BbsI	GAAGAC	3 cut(s)	162, 304, 569
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	296, 503
BceAI	ACGGC	2 cut(s)	660, 736
BciT130I	CCWGG	2 cut(s)	189, 426
BcoDI	GTCTC	2 cut(s)	203, 239
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	30
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	189, 426
Bme18I	GGWCC	2 cut(s)	428, 639
BmgT120I	GGNCC	4 cut(s)	428, 639, 801, 802
BmiI	GGNNCC	2 cut(s)	469, 803
BmrFI	CCNGG	2 cut(s)	189, 426
BmrI	ACTGGG	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	799
BpiI	GAAGAC	3 cut(s)	162, 304, 569
Bpu10I	CCTNAGC	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	187, 329, 642
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 810
Bse1I	ACTGG	3 cut(s)	598, 641, 805
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	189, 426
BseDI	CCNNGG	3 cut(s)	187, 329, 642
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	194, 810
BseMII	CTCAG	3 cut(s)	222, 244, 386
BseNI	ACTGG	3 cut(s)	598, 641, 805
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	805
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	803
BshNI	GGYRCC	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	194, 810
BsmAI	GTCTC	2 cut(s)	203, 239
BsnI	GGCC	1 cut(s)	803
Bso31I	GGTCTC	1 cut(s)	203
Bsp120I	GGGCCC	1 cut(s)	801
Bsp1286I	GDGCHC	1 cut(s)	805
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	114, 165
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	3 cut(s)	221, 243, 387
BspEI	TCCGGA	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	469, 803
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	598, 641, 805
BssECI	CCNNGG	3 cut(s)	187, 329, 642
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	2 cut(s)	189, 426
Bst4CI	ACNGT	2 cut(s)	344, 556
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	208, 230, 395, 567
BstDSI	CCRYGG	1 cut(s)	642
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	2 cut(s)	203, 239
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 616
BstNI	CCWGG	2 cut(s)	189, 426
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	187, 424
BstSLI	GKGCMC	1 cut(s)	805
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	3 cut(s)	162, 304, 569
BsuRI	GGCC	1 cut(s)	803
BtgI	CCRYGG	1 cut(s)	642
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	1 cut(s)	659
Cfr13I	GGNCC	4 cut(s)	428, 639, 801, 802
Csp6I	GTAC	5 cut(s)	19, 83, 468, 691, 697
CviQI	GTAC	5 cut(s)	19, 83, 468, 691, 697
DdeI	CTNAG	4 cut(s)	208, 230, 395, 567
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraI	TTTAAA	1 cut(s)	789
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	805
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	428, 639
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	187, 424
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	659
Hin1I	GRCGYC	1 cut(s)	309
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	2 cut(s)	301, 591
HindII	GTYRAC	2 cut(s)	301, 591
HinfI	GANTC	4 cut(s)	158, 212, 248, 281
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	283, 562, 608
Hpy166II	GTNNAC	3 cut(s)	301, 391, 591
Hpy188I	TCNGA	2 cut(s)	211, 526
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	3 cut(s)	301, 391, 591
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	256, 643, 829
HpyCH4III	ACNGT	2 cut(s)	344, 556
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	29, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 616
HpyF3I	CTNAG	4 cut(s)	208, 230, 395, 567
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	309
HspAI	GCGC	1 cut(s)	657
Kpn2I	TCCGGA	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	366, 571, 763
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	3 cut(s)	182, 550, 781
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	5 cut(s)	26, 167, 304, 574, 751
MfeI	CAATTG	2 cut(s)	109, 202
MhlI	GDGCHC	1 cut(s)	805
MluCI	AATT	4 cut(s)	94, 109, 150, 202
MlyI	GAGTC	3 cut(s)	152, 221, 242
MnlI	CCTC	6 cut(s)	32, 97, 450, 487, 529, 599
MroI	TCCGGA	1 cut(s)	215
MseI	TTAA	4 cut(s)	435, 633, 771, 788
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	189, 426
MunI	CAATTG	2 cut(s)	109, 202
MvaI	CCWGG	2 cut(s)	189, 426
MwoI	GCNNNNNNNGC	2 cut(s)	120, 616
NdeII	GATC	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	469, 803
NmuCI	GTSAC	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	3 cut(s)	152, 220, 242
PpsI	GAGTC	3 cut(s)	152, 220, 242
Psp6I	CCWGG	2 cut(s)	187, 424
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	187, 424
PspN4I	GGNNCC	2 cut(s)	469, 803
PspOMI	GGGCCC	1 cut(s)	801
PspPI	GGNCC	4 cut(s)	428, 639, 801, 802
RsaI	GTAC	5 cut(s)	20, 84, 469, 692, 698
RsaNI	GTAC	5 cut(s)	19, 83, 468, 691, 697
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	4 cut(s)	435, 633, 771, 788
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	4 cut(s)	428, 639, 801, 802
SchI	GAGTC	3 cut(s)	152, 221, 242
ScrFI	CCNGG	2 cut(s)	189, 426
SduI	GDGCHC	1 cut(s)	805
SetI	ASST	8 cut(s)	24, 34, 312, 396, 401, 576, 715, 748
SinI	GGWCC	2 cut(s)	428, 639
Sse9I	AATT	4 cut(s)	94, 109, 150, 202
SsiI	CCGC	2 cut(s)	114, 165
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	187, 424
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	2 cut(s)	344, 556
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	306, 315
TasI	AATT	4 cut(s)	94, 109, 150, 202
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	4 cut(s)	435, 633, 771, 788
Tru9I	TTAA	4 cut(s)	435, 633, 771, 788
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	575, 629
TspGWI	ACGGA	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	428, 639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	330
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.