Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004509.1

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

56715 .. 57494

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004509.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgtcatcacgtatctctcacctccttgcagctcttctttcactcttgttattcaacttccatggaagcaaagccgactttatacccacaaaaaattgccccatatacaattgtggtaatggccctgattttcactaccctttttggaaaattgaagactccaccgccggtcaatattgtggttaccctggttttggtctcaattgctcagagtccggagagccaatactaagactcccaaataatgactcctactatgtgaaagccataaactttattgattccaccatgacccttgttgacctcgacatcttcgatcaacaatgccctagggcaagacacaatgttagtgtaggcacgctcccattggattattccccactggatgtgaacctgagcttctacttcaactgcacttcctttcctgatcctgttgtgcctcccataatctgcttgggaatatggggtaccaaaatgtcttatgttttcacggagggagagcaatcagatgggtttgattggtctcaaagttgtgaagagaatgtggtggtgactgtgatgaagagtaaggagctttatattgataagttgattggtgcttttggaggacttatgaaccaggggtttgtgcttaactggaccacggcgaaggagtgcgcttcgtgtgagagtggtggtggtttgtgtgggtacaaccccactaaagctgatgagtttctctgcttctgcaaatatggcaacggcctatgcaggaagaaaggtatgctcctcgttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

259

Amino Acids

28.67

Weight (kDa)

4.95

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	422
AfaI	GTAC	2 cut(s)	469, 692
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	55, 155, 409
AjnI	CCWGG	2 cut(s)	187, 618
AluBI	AGCT	4 cut(s)	32, 399, 574, 707
AluI	AGCT	4 cut(s)	32, 399, 574, 707
Alw26I	GTCTC	2 cut(s)	203, 528
AlwI	GGATC	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	2 cut(s)	121, 742
ApeKI	GCWGC	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	467
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	2 cut(s)	122, 639
AsuHPI	GGTGA	2 cut(s)	11, 562
AvaII	GGWCC	1 cut(s)	639
AvrII	CCTAGG	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	2 cut(s)	660, 757
BciT130I	CCWGG	2 cut(s)	189, 620
BcoDI	GTCTC	2 cut(s)	203, 528
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	30
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	189, 620
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	122, 639
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	2 cut(s)	189, 620
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	11
BsaI	GGTCTC	2 cut(s)	203, 528
BsaJI	CCNNGG	5 cut(s)	61, 187, 329, 619, 642
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	387, 641
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	189, 620
BseDI	CCNNGG	5 cut(s)	61, 187, 329, 619, 642
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	222, 386
BseNI	ACTGG	2 cut(s)	387, 641
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	123, 744
BshNI	GGYRCC	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	168, 216
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	203, 528
BsnI	GGCC	2 cut(s)	123, 744
Bso31I	GGTCTC	2 cut(s)	203, 528
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	316, 427
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	123, 744
BspCNI	CTCAG	2 cut(s)	221, 387
BspEI	TCCGGA	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	2 cut(s)	203, 528
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	387, 641
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	5 cut(s)	61, 187, 329, 619, 642
BssMI	GATC	2 cut(s)	316, 427
BssT1I	CCWWGG	2 cut(s)	61, 329
Bst2UI	CCWGG	2 cut(s)	189, 620
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	3 cut(s)	39, 531, 557
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	208, 230, 395
BstDSI	CCRYGG	2 cut(s)	61, 642
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	2 cut(s)	319, 430
BstMAI	GTCTC	2 cut(s)	203, 528
BstMBI	GATC	2 cut(s)	316, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	735
BstNI	CCWGG	2 cut(s)	189, 620
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	187, 618
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	123, 744
BtgI	CCRYGG	2 cut(s)	61, 642
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	1 cut(s)	659
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	122, 639
Csp6I	GTAC	2 cut(s)	468, 691
CviAII	CATG	2 cut(s)	62, 289
CviJI	RGCY	9 cut(s)	32, 74, 123, 223, 266, 399, 574, 707, 744
CviKI_1	RGCY	9 cut(s)	32, 74, 123, 223, 266, 399, 574, 707, 744
CviQI	GTAC	2 cut(s)	468, 691
DdeI	CTNAG	3 cut(s)	208, 230, 395
DpnI	GATC	2 cut(s)	318, 429
DpnII	GATC	2 cut(s)	316, 427
Eam1104I	CTCTTC	3 cut(s)	39, 531, 557
EarI	CTCTTC	3 cut(s)	39, 531, 557
Eco130I	CCWWGG	2 cut(s)	61, 329
Eco31I	GGTCTC	2 cut(s)	203, 528
Eco47I	GGWCC	1 cut(s)	639
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	187, 618
EcoT14I	CCWWGG	2 cut(s)	61, 329
ErhI	CCWWGG	2 cut(s)	61, 329
FaeI	CATG	2 cut(s)	65, 292
FatI	CATG	2 cut(s)	61, 288
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	123, 744
HapII	CCGG	2 cut(s)	168, 216
HhaI	GCGC	1 cut(s)	659
Hin1II	CATG	2 cut(s)	65, 292
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	5 cut(s)	158, 212, 234, 248, 281
HpaII	CCGG	2 cut(s)	168, 216
HphI	GGTGA	2 cut(s)	11, 562
Hpy166II	GTNNAC	2 cut(s)	301, 391
Hpy188I	TCNGA	2 cut(s)	211, 508
Hpy188III	TCNNGA	2 cut(s)	216, 425
Hpy8I	GTNNAC	2 cut(s)	301, 391
HpyAV	CCTTC	1 cut(s)	643
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	29, 414, 729, 750
HpyF10VI	GCNNNNNNNGC	1 cut(s)	735
HpyF3I	CTNAG	3 cut(s)	208, 230, 395
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	65, 292
HspAI	GCGC	1 cut(s)	657
Kpn2I	TCCGGA	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	316, 427
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	366, 571, 771
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	182, 550
MalI	GATC	2 cut(s)	318, 429
MboI	GATC	2 cut(s)	316, 427
MboII	GAAGA	6 cut(s)	26, 167, 304, 548, 574, 766
MfeI	CAATTG	2 cut(s)	109, 202
MluCI	AATT	4 cut(s)	94, 109, 150, 202
MlyI	GAGTC	4 cut(s)	152, 221, 228, 242
MnlI	CCTC	6 cut(s)	32, 314, 450, 487, 599, 779
MroI	TCCGGA	1 cut(s)	215
MseI	TTAA	2 cut(s)	633, 778
MspI	CCGG	2 cut(s)	168, 216
MspR9I	CCNGG	2 cut(s)	189, 620
MunI	CAATTG	2 cut(s)	109, 202
MvaI	CCWGG	2 cut(s)	189, 620
MwoI	GCNNNNNNNGC	1 cut(s)	735
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	316, 427
NlaIII	CATG	2 cut(s)	65, 292
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	4 cut(s)	152, 220, 228, 242
PpsI	GAGTC	4 cut(s)	152, 220, 228, 242
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	187, 618
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	187, 618
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	122, 639
RsaI	GTAC	2 cut(s)	469, 692
RsaNI	GTAC	2 cut(s)	468, 691
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	633, 778
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	316, 427
Sau96I	GGNCC	2 cut(s)	122, 639
SchI	GAGTC	4 cut(s)	152, 221, 228, 242
ScrFI	CCNGG	2 cut(s)	189, 620
SetI	ASST	9 cut(s)	13, 24, 34, 306, 396, 401, 576, 709, 763
SinI	GGWCC	1 cut(s)	639
Sse9I	AATT	4 cut(s)	94, 109, 150, 202
SsiI	CCGC	1 cut(s)	165
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	187, 618
StyI	CCWWGG	2 cut(s)	61, 329
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	306, 315
TasI	AATT	4 cut(s)	94, 109, 150, 202
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	633, 778
Tru9I	TTAA	2 cut(s)	633, 778
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	575, 629
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.