Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Forward (+)

63249029 .. 63249835

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCATCACCTACCTCTTACCTCCTCATAGCTCTTCTCTTGCTCTTCTTCTTTAACTTCCATGGAAGCAAAGCCAACTTTTTGGCCTCAACAAATTGCCCCATTTACAGTTGTGATAATGAGCTTGATTTTCACTACCCTTTTTGGAAAATCGAAGACTCCACAGCCCATCAACAATGTGGATACCCTGGTTTTGGTCTAACATGCTCAGATTCTGGAGAGCCTATACTGACTCTACCAAATGATTCATTCATTGTTAAAGACATAAACTTTACTGCATCCACCATCACCCTTGTTGACATGGACGTTGTTAATCAAACATGCCCTAGGGCAAGACACACGATGAGTGTAGGCACGCTCCCATTGGATTACTCCCCATTGGATGTGAACCTGAGCTTCTACTTCAACTGCACTTCCTTTCCTGATCCTGCTGTGCCTCCCATAACCTGCTTGGGATCGTACGGTACCAAAAAGTCTTATGTTATCACGGAGGGAGAGGAACCAGATGGGTTTGATTGGTCGGAATATTGTGCGGAGAATGTGGTGGTGACTGTGAAAAAAACAGAGGAGATTACTAGAAGTATTGGCGAGTTGATTGGTGCATTTGGATTGGCCATGAACAATGGGTTTGTGCTTAACTGGACCATGGCTAAGGAGTGCGGTTCCTGTGAGACTAATGGTGGGTTCTGTGGCTACAACAACACTGCGCCAGAGATTCTGTGCTTTTGCAAAGATGGTAGTATTGGTACCACAAGCACTGCCCTCTGCAAGAAAGGTATGGTTTCTTACCTTGATCCTGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

269

Amino Acids

29.35

Weight (kDa)

4.47

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	33 - 100	1.9e-15	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	150 - 246	1.5e-19	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
Acc65I	GGTACC	2 cut(s)	464, 746
AccB1I	GGYRCC	2 cut(s)	464, 746
AciI	CCGC	2 cut(s)	533, 660
AclWI	GGATC	3 cut(s)	419, 463, 788
AcoI	YGGCCR	1 cut(s)	612
AfaI	GTAC	3 cut(s)	461, 466, 748
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	32, 124, 396
AluI	AGCT	3 cut(s)	32, 124, 396
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	3 cut(s)	419, 463, 788
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	84, 612
Asp718I	GGTACC	2 cut(s)	464, 746
AspA2I	CCTAGG	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	2 cut(s)	280, 559
AvaII	GGWCC	1 cut(s)	642
AvrII	CCTAGG	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BalI	TGGCCA	1 cut(s)	614
BanI	GGYRCC	2 cut(s)	464, 746
BbsI	GAAGAC	1 cut(s)	162
BccI	CCATC	4 cut(s)	177, 293, 500, 728
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	2 cut(s)	327, 576
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	176
BlnI	CCTAGG	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	4 cut(s)	466, 501, 664, 748
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	2 cut(s)	392, 651
BsaJI	CCNNGG	4 cut(s)	61, 187, 326, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	4 cut(s)	61, 187, 326, 645
BseGI	GGATG	2 cut(s)	278, 388
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	222, 383
BseNI	ACTGG	1 cut(s)	644
BseRI	GAGGAG	2 cut(s)	14, 581
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	86, 614
BshNI	GGYRCC	2 cut(s)	464, 746
BsiWI	CGTACG	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	665
BsnI	GGCC	2 cut(s)	86, 614
Bsp143I	GATC	3 cut(s)	424, 455, 793
Bsp19I	CCATGG	2 cut(s)	61, 645
BspACI	CCGC	2 cut(s)	533, 660
BspANI	GGCC	2 cut(s)	86, 614
BspCNI	CTCAG	2 cut(s)	221, 384
BspLI	GGNNCC	4 cut(s)	466, 501, 664, 748
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	3 cut(s)	419, 463, 788
BspQI	GCTCTTC	2 cut(s)	39, 50
BspT107I	GGYRCC	2 cut(s)	464, 746
BsrI	ACTGG	1 cut(s)	644
BssECI	CCNNGG	4 cut(s)	61, 187, 326, 645
BssMI	GATC	3 cut(s)	424, 455, 793
BssT1I	CCWWGG	3 cut(s)	61, 326, 645
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	110, 464, 553
Bst6I	CTCTTC	2 cut(s)	39, 50
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	208, 392, 651
BstDSI	CCRYGG	2 cut(s)	61, 645
BstF5I	GGATG	2 cut(s)	278, 388
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	3 cut(s)	427, 458, 796
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	424, 455, 793
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	207, 324
BstSCI	CCNGG	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	86, 614
BtgI	CCRYGG	2 cut(s)	61, 645
BtsCI	GGATG	2 cut(s)	278, 388
BtsI	GCAGTG	2 cut(s)	702, 756
BtsIMutI	CAGTG	2 cut(s)	702, 756
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	3 cut(s)	460, 465, 747
CviAII	CATG	6 cut(s)	62, 204, 301, 321, 616, 646
CviQI	GTAC	3 cut(s)	460, 465, 747
DdeI	CTNAG	3 cut(s)	208, 392, 651
DpnI	GATC	3 cut(s)	426, 457, 795
DpnII	GATC	3 cut(s)	424, 455, 793
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	2 cut(s)	39, 50
EarI	CTCTTC	2 cut(s)	39, 50
Eco130I	CCWWGG	3 cut(s)	61, 326, 645
Eco47I	GGWCC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	3 cut(s)	61, 326, 645
ErhI	CCWWGG	3 cut(s)	61, 326, 645
FaeI	CATG	6 cut(s)	65, 207, 304, 324, 619, 649
FatI	CATG	6 cut(s)	61, 203, 300, 320, 615, 645
FokI	GGATG	2 cut(s)	265, 395
FspBI	CTAG	2 cut(s)	327, 576
GlaI	GCGC	1 cut(s)	708
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	86, 614
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	6 cut(s)	65, 207, 304, 324, 619, 649
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	5 cut(s)	158, 212, 232, 245, 715
HphI	GGTGA	2 cut(s)	280, 559
Hpy166II	GTNNAC	2 cut(s)	298, 388
Hpy188I	TCNGA	2 cut(s)	211, 523
Hpy188III	TCNNGA	2 cut(s)	216, 422
Hpy8I	GTNNAC	2 cut(s)	298, 388
HpyCH4III	ACNGT	3 cut(s)	110, 464, 553
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	5 cut(s)	278, 411, 602, 729, 768
HpyF3I	CTNAG	3 cut(s)	208, 392, 651
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	6 cut(s)	65, 207, 304, 324, 619, 649
HspAI	GCGC	1 cut(s)	707
KpnI	GGTACC	2 cut(s)	468, 750
Kzo9I	GATC	3 cut(s)	424, 455, 793
LguI	GCTCTTC	2 cut(s)	39, 50
LmnI	GCTCC	1 cut(s)	363
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	2 cut(s)	327, 576
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	3 cut(s)	426, 457, 795
MboI	GATC	3 cut(s)	424, 455, 793
MboII	GAAGA	4 cut(s)	26, 37, 40, 167
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	1 cut(s)	94
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	2 cut(s)	152, 226
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	9 cut(s)	25, 32, 35, 97, 447, 484, 490, 559, 773
Mox20I	TGGCCA	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	5 cut(s)	54, 258, 312, 636, 805
Msp20I	TGGCCA	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
NcoI	CCATGG	2 cut(s)	61, 645
NdeII	GATC	3 cut(s)	424, 455, 793
NlaIII	CATG	6 cut(s)	65, 207, 304, 324, 619, 649
NlaIV	GGNNCC	4 cut(s)	466, 501, 664, 748
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	2 cut(s)	207, 324
PciSI	GCTCTTC	2 cut(s)	39, 50
PfeI	GAWTC	3 cut(s)	212, 245, 715
Pfl23II	CGTACG	1 cut(s)	459
PleI	GAGTC	2 cut(s)	152, 226
PpsI	GAGTC	2 cut(s)	152, 226
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspLI	CGTACG	1 cut(s)	459
PspN4I	GGNNCC	4 cut(s)	466, 501, 664, 748
PspPI	GGNCC	1 cut(s)	642
PstNI	CAGNNNCTG	1 cut(s)	215
RsaI	GTAC	3 cut(s)	461, 466, 748
RsaNI	GTAC	3 cut(s)	460, 465, 747
SapI	GCTCTTC	2 cut(s)	39, 50
SaqAI	TTAA	5 cut(s)	54, 258, 312, 636, 805
Sau3AI	GATC	3 cut(s)	424, 455, 793
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	2 cut(s)	152, 226
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	287
SinI	GGWCC	1 cut(s)	642
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	533, 660
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	2 cut(s)	327, 576
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	3 cut(s)	61, 326, 645
TaaI	ACNGT	3 cut(s)	110, 464, 553
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	94
TfiI	GAWTC	3 cut(s)	212, 245, 715
Tru1I	TTAA	5 cut(s)	54, 258, 312, 636, 805
Tru9I	TTAA	5 cut(s)	54, 258, 312, 636, 805
TscAI	CASTG	2 cut(s)	709, 763
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	3 cut(s)	237, 241, 632
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	709, 763
VpaK11BI	GGWCC	1 cut(s)	642
XceI	RCATGY	2 cut(s)	207, 324
XcmI	CCANNNNNNNNNTGG	2 cut(s)	176, 448
XmaJI	CCTAGG	1 cut(s)	326
XspI	CTAG	2 cut(s)	327, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.