Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

27639806 .. 27641024

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTGCTTCATTTTCTTTATACGGCGACGCCGCAACAGAAATCGAGATGGTCCATCATCCAATGCATCTCGAAGCATCTATTCTAAAATCTATTCTAGAAGTGATACTAAGAAGGGAAGTGCATACCCTGGAGTTCATGTCTTCACTTACAAGGAACTTGAACAAGCAACAAACTATTTCGATTCATCTAAAAAACTTGGTGATGGAGGCTTTGGCACTGTTTACTATGGAAGAATCCGTGATGGGCGAGCAGTTGCTGTCAAGCGACTATATGAAACCAATTGCAAGAGAGTTGAGCAGTTCCTGAATGAAATTGAGATTTTAGCTCGCCTACGCCACCAAAACCTTGTCTTACTCTATGGATGCACCTCTCGTCACAGCCGTGAACTCCTCCTTGTCTACGAATATGTTCCCAATGGAACTCTTGCTAATCATCTTCACGGTGGAAAAGCAAAACCCGGTGCACTGCCATGGCATACTCGAATCAACATTGCCGTAGAAACTGCAAGTGCATTGTTCTATCTTCATGCGTCTGAGATCATCCACCGCGATGTGAAAACCACTAACATTCTCCTCGACAACAATTTCTGTGTCAAAGTAGCAGATTTTGGACTATCTCGTCTCTTTCCCATGGATGTCACCCATGTATCAACTGCTCCACAAGGAACTCCAGGTTATGTCGATCCTGATTATAACCAATGCTACCAGCTTACTACAAAGAGTGATGTCTATAGCTTCGGTGTGGTCCTGGTTGAACTCATATCATCCTTGCCTGCTGTTGATGTCACAAGGCATCGACAGGAGATCAATTTGTCGAACATGGCTATCAACAAGATTCAGAAAAATGCATTGCATGAGCTAGTTGATCCATCCCTGGGGTATGAATCAGACTTTAAGGTAAGAAAAATGATCAATGCAGTGGCGGAATTAGCGTTTCGGTGCCTGCAAAGTGAGACGGACATGAGACCTTCTATGGTTGATGTGGAAAATGAACTAAAGAGGATACAGAGTGATGATTTTAGCAAAGAAATCACTACAACAATGATAGTCATTTCCAAGGGTGGAGTTTGGTCGGAAAAGGCACTTTCCCTGTCAGAAAAAGCTATTTCCGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0036211 GO:0042221 GO:0042631 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

372

Amino Acids

42.08

Weight (kDa)

8.95

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 328	7.1e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	63 - 332	1.4e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
AasI	GACNNNNNNGTC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	939
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	549
AciI	CCGC	3 cut(s)	31, 547, 923
AclWI	GGATC	2 cut(s)	677, 860
AcyI	GRCGYC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	875
AgsI	TTSAA	2 cut(s)	161, 755
AjnI	CCWGG	4 cut(s)	127, 670, 747, 873
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	6 cut(s)	326, 709, 735, 859, 1103, 1116
AluI	AGCT	6 cut(s)	326, 709, 735, 859, 1103, 1116
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	3 cut(s)	626, 947, 958
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	677, 860
AlwNI	CAGNNNCTG	2 cut(s)	257, 304
ApaLI	GTGCAC	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	50, 745
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	2 cut(s)	212, 631
AvaII	GGWCC	2 cut(s)	50, 745
BaeGI	GKGCMC	1 cut(s)	466
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BanI	GGYRCC	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	466
BccI	CCATC	5 cut(s)	41, 61, 197, 236, 877
BceAI	ACGGC	3 cut(s)	38, 366, 479
BciT130I	CCWGG	4 cut(s)	129, 672, 749, 875
BciVI	GTATCC	1 cut(s)	996
BclI	TGATCA	1 cut(s)	909
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	626, 947, 958
BfaI	CTAG	3 cut(s)	96, 860, 1117
BfmI	CTRYAG	1 cut(s)	730
BfuI	GTATCC	1 cut(s)	996
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	5 cut(s)	129, 459, 672, 749, 875
Bme18I	GGWCC	2 cut(s)	50, 745
BmgT120I	GGNCC	2 cut(s)	50, 745
BmiI	GGNNCC	1 cut(s)	941
BmrFI	CCNGG	5 cut(s)	129, 459, 672, 749, 875
BmsI	GCATC	4 cut(s)	74, 84, 353, 802
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	150, 654
BpuMI	CCSGG	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	958
BsaJI	CCNNGG	6 cut(s)	127, 470, 630, 873, 874, 1056
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	875
Bse3DI	GCAATG	2 cut(s)	489, 848
BseBI	CCWGG	4 cut(s)	129, 672, 749, 875
BseDI	CCNNGG	6 cut(s)	127, 470, 630, 873, 874, 1056
BseGI	GGATG	6 cut(s)	56, 368, 540, 640, 764, 869
BseLI	CCNNNNNNNGG	1 cut(s)	875
BseMI	GCAATG	2 cut(s)	489, 848
BseMII	CTCAG	1 cut(s)	525
BseRI	GAGGAG	2 cut(s)	380, 563
BseSI	GKGCMC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	549
BshNI	GGYRCC	1 cut(s)	939
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	875
BsmAI	GTCTC	3 cut(s)	626, 947, 958
BsmBI	CGTCTC	2 cut(s)	626, 947
Bso31I	GGTCTC	1 cut(s)	958
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	537, 682, 804, 865, 909
Bsp19I	CCATGG	2 cut(s)	470, 630
BspACI	CCGC	3 cut(s)	31, 547, 923
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	941
BspPI	GGATC	2 cut(s)	677, 860
BspT107I	GGYRCC	1 cut(s)	939
BspTNI	GGTCTC	1 cut(s)	958
BsrDI	GCAATG	2 cut(s)	489, 848
BssECI	CCNNGG	6 cut(s)	127, 470, 630, 873, 874, 1056
BssMI	GATC	5 cut(s)	537, 682, 804, 865, 909
BssNI	GRCGYC	1 cut(s)	28
BssT1I	CCWWGG	3 cut(s)	470, 630, 1056
Bst2UI	CCWGG	4 cut(s)	129, 672, 749, 875
Bst4CI	ACNGT	2 cut(s)	220, 443
BstACI	GRCGYC	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	249, 328, 774, 944
BstDEI	CTNAG	2 cut(s)	108, 534
BstDSI	CCRYGG	2 cut(s)	470, 630
BstF5I	GGATG	6 cut(s)	56, 368, 540, 640, 764, 869
BstFNI	CGCG	1 cut(s)	549
BstKTI	GATC	5 cut(s)	540, 685, 807, 868, 912
BstMAI	GTCTC	3 cut(s)	626, 947, 958
BstMBI	GATC	5 cut(s)	537, 682, 804, 865, 909
BstMWI	GCNNNNNNNGC	1 cut(s)	929
BstNI	CCWGG	4 cut(s)	129, 672, 749, 875
BstSCI	CCNGG	5 cut(s)	127, 457, 670, 747, 873
BstSFI	CTRYAG	1 cut(s)	730
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	549
BstV2I	GAAGAC	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	996
BtgI	CCRYGG	2 cut(s)	470, 630
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	6 cut(s)	56, 368, 540, 640, 764, 869
BtsI	GCAGTG	2 cut(s)	464, 924
BtsIMutI	CAGTG	3 cut(s)	216, 464, 924
Cac8I	GCNNGC	4 cut(s)	249, 328, 774, 944
CaiI	CAGNNNCTG	2 cut(s)	257, 304
Cfr13I	GGNCC	2 cut(s)	50, 745
CseI	GACGC	2 cut(s)	36, 519
CviAII	CATG	8 cut(s)	137, 471, 527, 631, 644, 820, 854, 961
CviJI	RGCY	9 cut(s)	210, 326, 381, 709, 735, 824, 859, 1103, 1116
CviKI_1	RGCY	9 cut(s)	210, 326, 381, 709, 735, 824, 859, 1103, 1116
DdeI	CTNAG	2 cut(s)	108, 534
DpnI	GATC	5 cut(s)	539, 684, 806, 867, 911
DpnII	GATC	5 cut(s)	537, 682, 804, 865, 909
DrdI	GACNNNNNNGTC	1 cut(s)	618
DseDI	GACNNNNNNGTC	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	938
Eco130I	CCWWGG	3 cut(s)	470, 630, 1056
Eco31I	GGTCTC	1 cut(s)	958
Eco47I	GGWCC	2 cut(s)	50, 745
EcoRII	CCWGG	4 cut(s)	127, 670, 747, 873
EcoT14I	CCWWGG	3 cut(s)	470, 630, 1056
EcoT22I	ATGCAT	2 cut(s)	67, 850
ErhI	CCWWGG	3 cut(s)	470, 630, 1056
Esp3I	CGTCTC	2 cut(s)	626, 947
FaeI	CATG	8 cut(s)	140, 474, 530, 634, 647, 823, 857, 964
FatI	CATG	8 cut(s)	136, 470, 526, 630, 643, 819, 853, 960
FbaI	TGATCA	1 cut(s)	909
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	6 cut(s)	43, 375, 527, 647, 751, 856
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	3 cut(s)	96, 860, 1117
GluI	GCNGC	1 cut(s)	31
GsuI	CTGGAG	2 cut(s)	150, 654
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	2 cut(s)	36, 519
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	8 cut(s)	140, 474, 530, 634, 647, 823, 857, 964
HinfI	GANTC	5 cut(s)	182, 234, 483, 835, 884
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	212, 631
Hpy166II	GTNNAC	4 cut(s)	223, 386, 400, 464
Hpy188I	TCNGA	6 cut(s)	535, 840, 889, 1075, 1096, 1111
Hpy188III	TCNNGA	5 cut(s)	44, 69, 96, 304, 686
Hpy8I	GTNNAC	4 cut(s)	223, 386, 400, 464
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	106, 978
HpyCH4III	ACNGT	2 cut(s)	220, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	929
HpyF3I	CTNAG	2 cut(s)	108, 534
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	8 cut(s)	140, 474, 530, 634, 647, 823, 857, 964
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	5 cut(s)	537, 682, 804, 865, 909
LmnI	GCTCC	1 cut(s)	661
LweI	GCATC	4 cut(s)	74, 84, 353, 802
MaeI	CTAG	3 cut(s)	96, 860, 1117
MaeIII	GTNAC	3 cut(s)	374, 637, 784
MalI	GATC	5 cut(s)	539, 684, 806, 867, 911
MboI	GATC	5 cut(s)	537, 682, 804, 865, 909
MboII	GAAGA	4 cut(s)	133, 243, 428, 515
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	5 cut(s)	280, 312, 583, 808, 926
MmeI	TCCRAC	1 cut(s)	1053
MnlI	CCTC	5 cut(s)	200, 379, 401, 584, 993
Mph1103I	ATGCAT	2 cut(s)	67, 850
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	894
MslI	CAYNNNNRTG	3 cut(s)	381, 469, 549
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	5 cut(s)	129, 459, 672, 749, 875
MunI	CAATTG	1 cut(s)	280
MvaI	CCWGG	4 cut(s)	129, 672, 749, 875
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	929
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	2 cut(s)	470, 630
NdeII	GATC	5 cut(s)	537, 682, 804, 865, 909
NlaIII	CATG	8 cut(s)	140, 474, 530, 634, 647, 823, 857, 964
NlaIV	GGNNCC	1 cut(s)	941
NmuCI	GTSAC	3 cut(s)	374, 637, 784
NsiI	ATGCAT	2 cut(s)	67, 850
OliI	CACNNNNGTG	1 cut(s)	381
PasI	CCCWGGG	1 cut(s)	874
PcsI	WCGNNNNNNNCGW	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	5 cut(s)	182, 234, 483, 835, 884
PkrI	GCNGC	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	693
Psp6I	CCWGG	4 cut(s)	127, 670, 747, 873
PspGI	CCWGG	4 cut(s)	127, 670, 747, 873
PspN4I	GGNNCC	1 cut(s)	941
PspPI	GGNCC	2 cut(s)	50, 745
PstNI	CAGNNNCTG	2 cut(s)	257, 304
RseI	CAYNNNNRTG	3 cut(s)	381, 469, 549
SaqAI	TTAA	1 cut(s)	894
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	5 cut(s)	537, 682, 804, 865, 909
Sau96I	GGNCC	2 cut(s)	50, 745
ScrFI	CCNGG	5 cut(s)	129, 459, 672, 749, 875
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	4 cut(s)	74, 84, 353, 802
SfcI	CTRYAG	1 cut(s)	730
SinI	GGWCC	2 cut(s)	50, 745
SmiMI	CAYNNNNRTG	3 cut(s)	381, 469, 549
Sse9I	AATT	5 cut(s)	280, 312, 583, 808, 926
SsiI	CCGC	3 cut(s)	31, 547, 923
SspMI	CTAG	3 cut(s)	96, 860, 1117
StyD4I	CCNGG	5 cut(s)	127, 457, 670, 747, 873
StyI	CCWWGG	3 cut(s)	470, 630, 1056
TaaI	ACNGT	2 cut(s)	220, 443
TaqI	TCGA	8 cut(s)	43, 70, 180, 481, 576, 681, 796, 815
TasI	AATT	5 cut(s)	280, 312, 583, 808, 926
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	5 cut(s)	182, 234, 483, 835, 884
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	3 cut(s)	223, 471, 924
TseFI	GTSAC	3 cut(s)	374, 637, 784
Tsp45I	GTSAC	3 cut(s)	374, 637, 784
TspDTI	ATGAA	7 cut(s)	125, 174, 288, 324, 515, 897, 1005
TspGWI	ACGGA	2 cut(s)	227, 971
TspRI	CASTG	3 cut(s)	223, 471, 924
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	50, 745
XbaI	TCTAGA	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	3 cut(s)	96, 860, 1117
Zsp2I	ATGCAT	2 cut(s)	67, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.