Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG086300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGTCATCACCTACCTCTTACCTCCCTGTAGCTGTTCTCTTACTCTTGTTCTTCAACTTCCATGGAAGCAATGCCAACTTTTCAGCCTCAACAAATTGTCCCAAATACAGTTGTAGTAATGGCCTTGATTTTCACTACCCTTTTTGGCTGGTAAATGATTCCACAGCCCATCAATATTGTGGCTACCCTGGTTTTGGTCTAAGATGCTCAGATTCTGGAGAGCCTATACTGACTCTGCCAAATGATTCATTCATTGTTAAAGACATAGACTTCACTCTATCCACGATCACCCTTGTTGACATTGATGTTGTTAATCAAACATGCCCTAGGGCAAGACATAGTATGAGTGTAGGCACGCTCCCATTGGATTACTCCCCATTGGATGTGAACCTGAGCTTCTACTTCAACTGCACTCCCTTTCCTGATCCTGCTGTGCCTCCCATAACCTGCTTGGGATTATATGGTACCAAAAAGTCTTATGTTTTCACGGAGGGAGAGGAACCAGATGGGTTTGATTGGTCGGAATATTGTAAGGAGAATGTGGTGGTGACTGTGAAAAAAACAGAGGAGATTACTAGAAGTATTGGCGAGTTGATTGGTGCTTTTGGATTGGCCATGAACAATGGGTTTGTGCTTAACTGGACCATGGCTAAGGAGTGCGGTTCCTGTGAGGTTAATGGTGGCCGGTGTGGCTACAACAACAACACTGCGCCAGAGTTTCTGTGCTTTTGCAAAGATGGTAGTATTGGTACCAGAAGCAATGGCCTCTGCAAGAAAGGCTCTAAGTTCAACTGGAAATTGAAGGTTGTCGTAGGTAATATCCACAATCCCTTTATTCTTCAGCTGTCTAATGTCCTCCAAGCTCATATGATTCTCAGTTGCAAATTTGCTACTTCTTATAGTGAGCTCGCCATTTTCTCTTCAGGTCTTTGCTCGGTTATTGGAACTATAGCCGTAATGTGCTTCATTTTCTTTATATGGCGACGCCGCAACAGAAATCGATATGGTCCATCATCCTATGCATCTCGAAGCATCTTTTCTAAAAGCTATTCCAGAAGTGATACTGAGAAGGGAAGTGCATACCTTGGAGTTCATGTCTTCACCTACAAGGAACTTGAACAAGCAACAAACTATTTCGACTCATCAAAAGAAATTGGGGATGGAGGCTTTGGCACAGTGTACTTTGGAAAAGTTCGTGATGGGCGATCAGTTGCTGTCAAGCGTCTTTACGAAACCAATTACAAGAGAGTTGAGCAGTTCATGAATGAAATCGAGATTTTAGCTCGCCTACGCCACCAAAACCTTGTCTTACTCTATGGATGCACCTCTCGTCACAGCCGTGAACTCCTCCTTGTCTATGAATATGTTCCCAATGGAACTCTTGCTGATCATCTTCACGGTGGAAAAGCAAAACCCGGTGCACTGCCATGGCATACTCGAATCAACATTGCCGTAGAAACTGCAAGTGCATTGTCCTATCTTCATGCGTCTGAGATCATCCACCGCGATGTGAAAACCACTAACATTCTCCTTGACAACAATTTCTGTGTCAAAGTAGCAGATTTTGGACTGTCTCGTCTCTTCCCCACGGATGTCACCCATATCTCAACTGCTCCACAAGGAACTCCAGGTTATGTTGATCCCGATTATAACCAATGCTACCAGCTTACTGCGAAGAGTGATGTCTATAGCTTCGGTGTGGTCCTGGTTGAACTCATATCATCCTTGCCTGCTGTTGATATCACAAGGCATCGACATGAGATCAATTTGTCAAACATGGCTATCATCAAAATTCAGAAACATGCATTGCAAGAGCTAGTGGATCCATCCCTTGGGTATGAATCAGACTTTAAAGTAAGAAAAATGATCAATGCAGTGGCGGAATTAGCGTTTCGGTGCCTGCAAAATGAGACTGAAATGAGACCTTCTATGGTTGATGTGGAAAATGAACTAAAGAGGATACAGAGTGATGATTTTAGTAAAGAAAAGGCAGAGGAAATTGATATTTCAGCTGATGATGTTGTGCTGTTAAAGAGTGGTCCTCTGCCACCTTCACCAGATTCTGTGACAATAAATTGGGTTAGCAAGTCTTCAACACCAAATGATAGCACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0036211 GO:0042221 GO:0042631 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

705

Amino Acids

78.5

Weight (kDa)

6.16

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	33 - 100	1.4e-15	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	150 - 247	1e-18	Wall-associated receptor kinase C-terminal
Pkinase	PF00069	380 - 647	3.1e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	382 - 651	6.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1650
AasI	GACNNNNNNGTC	1 cut(s)	1575
Acc36I	ACCTGC	1 cut(s)	455
Acc65I	GGTACC	2 cut(s)	464, 749
AccB1I	GGYRCC	3 cut(s)	464, 749, 1896
AccB7I	CCANNNNNTGG	1 cut(s)	1832
AccII	CGCG	1 cut(s)	1506
AciI	CCGC	4 cut(s)	660, 988, 1504, 1880
AclWI	GGATC	4 cut(s)	419, 1634, 1817, 1830
AcoI	YGGCCR	2 cut(s)	612, 682
AcsI	RAATTY	2 cut(s)	884, 1791
AcuI	CTGAAG	2 cut(s)	824, 906
AcyI	GRCGYC	1 cut(s)	985
AfaI	GTAC	3 cut(s)	466, 751, 1181
AfiI	CCNNNNNNNGG	2 cut(s)	194, 1832
AgsI	TTSAA	7 cut(s)	55, 406, 790, 802, 1118, 1712, 2094
AjnI	CCWGG	3 cut(s)	187, 1627, 1704
AleI	CACNNNNGTG	1 cut(s)	1338
Alw21I	GWGCWC	2 cut(s)	909, 1423
Alw26I	GTCTC	4 cut(s)	1578, 1583, 1904, 1915
Alw44I	GTGCAC	1 cut(s)	1419
AlwI	GGATC	4 cut(s)	419, 1634, 1817, 1830
AlwNI	CAGNNNCTG	3 cut(s)	215, 1214, 2063
AoxI	GGCC	4 cut(s)	121, 612, 682, 763
ApaLI	GTGCAC	1 cut(s)	1419
ApoI	RAATTY	2 cut(s)	884, 1791
Asp700I	GAANNNNTTC	1 cut(s)	1365
Asp718I	GGTACC	2 cut(s)	464, 749
AspA2I	CCTAGG	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	4 cut(s)	642, 1007, 1702, 2039
AsuC2I	CCSGG	1 cut(s)	1416
AsuHPI	GGTGA	5 cut(s)	280, 559, 1093, 1588, 2046
AvaII	GGWCC	4 cut(s)	642, 1007, 1702, 2039
AvrII	CCTAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	1423
BalI	TGGCCA	1 cut(s)	614
BamHI	GGATCC	1 cut(s)	1822
BanI	GGYRCC	3 cut(s)	464, 749, 1896
BanII	GRGCYC	1 cut(s)	909
BbsI	GAAGAC	2 cut(s)	1090, 2082
Bbv12I	GWGCWC	2 cut(s)	909, 1423
BccI	CCATC	7 cut(s)	177, 500, 731, 1018, 1154, 1193, 1834
BceAI	ACGGC	3 cut(s)	938, 1323, 1436
BciT130I	CCWGG	3 cut(s)	189, 1629, 1706
BciVI	GTATCC	1 cut(s)	1953
BclI	TGATCA	2 cut(s)	1387, 1866
BcnI	CCSGG	1 cut(s)	1416
BcoDI	GTCTC	4 cut(s)	1578, 1583, 1904, 1915
BfaI	CTAG	3 cut(s)	327, 576, 1817
BfmI	CTRYAG	3 cut(s)	27, 948, 1687
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	1953
BglI	GCCNNNNNGGC	1 cut(s)	690
BisI	GCNGC	1 cut(s)	988
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	989
Bme1390I	CCNGG	4 cut(s)	189, 1416, 1629, 1706
Bme18I	GGWCC	4 cut(s)	642, 1007, 1702, 2039
BmgT120I	GGNCC	4 cut(s)	642, 1007, 1702, 2039
BmiI	GGNNCC	6 cut(s)	466, 501, 664, 751, 1824, 1898
BmrFI	CCNGG	4 cut(s)	189, 1416, 1629, 1706
BmsI	GCATC	5 cut(s)	194, 1031, 1041, 1310, 1759
BpiI	GAAGAC	2 cut(s)	1090, 2082
BplI	GAGNNNNNCTC	2 cut(s)	2026, 2058
BpmI	CTGGAG	2 cut(s)	237, 1611
Bpu10I	CCTNAGC	2 cut(s)	392, 651
BpuMI	CCSGG	1 cut(s)	1416
Bsa29I	ATCGAT	1 cut(s)	1000
BsaHI	GRCGYC	1 cut(s)	985
BsaI	GGTCTC	1 cut(s)	1915
BsaJI	CCNNGG	8 cut(s)	61, 187, 326, 645, 1084, 1427, 1587, 1831
BsaXI	ACNNNNNCTCC	2 cut(s)	1080, 1110
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 1832
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	3 cut(s)	644, 797, 2116
Bse3DI	GCAATG	4 cut(s)	76, 766, 1446, 1805
BseBI	CCWGG	3 cut(s)	189, 1629, 1706
BseCI	ATCGAT	1 cut(s)	1000
BseDI	CCNNGG	8 cut(s)	61, 187, 326, 645, 1084, 1427, 1587, 1831
BseGI	GGATG	8 cut(s)	388, 1013, 1165, 1325, 1497, 1597, 1721, 1826
BseLI	CCNNNNNNNGG	2 cut(s)	194, 1832
BseMI	GCAATG	4 cut(s)	76, 766, 1446, 1805
BseMII	CTCAG	5 cut(s)	222, 383, 889, 1056, 1482
BseNI	ACTGG	3 cut(s)	644, 797, 2116
BseRI	GAGGAG	2 cut(s)	581, 1337
BseSI	GKGCMC	1 cut(s)	1423
BsgI	GTGCAG	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	1506
BshFI	GGCC	4 cut(s)	123, 614, 684, 765
BshNI	GGYRCC	3 cut(s)	464, 749, 1896
BshVI	ATCGAT	1 cut(s)	1000
BsiHKAI	GWGCWC	2 cut(s)	909, 1423
BsiSI	CCGG	2 cut(s)	685, 1416
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	194, 1832
BsmAI	GTCTC	4 cut(s)	1578, 1583, 1904, 1915
BsmBI	CGTCTC	1 cut(s)	1583
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	123, 614, 684, 765
Bso31I	GGTCTC	1 cut(s)	1915
Bsp1286I	GDGCHC	2 cut(s)	909, 1423
Bsp143I	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
Bsp19I	CCATGG	3 cut(s)	61, 645, 1427
BspACI	CCGC	4 cut(s)	660, 988, 1504, 1880
BspANI	GGCC	4 cut(s)	123, 614, 684, 765
BspCNI	CTCAG	5 cut(s)	221, 384, 888, 1057, 1483
BspDI	ATCGAT	1 cut(s)	1000
BspFNI	CGCG	1 cut(s)	1506
BspHI	TCATGA	1 cut(s)	1260
BspLI	GGNNCC	6 cut(s)	466, 501, 664, 751, 1824, 1898
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	4 cut(s)	419, 1634, 1817, 1830
BspT107I	GGYRCC	3 cut(s)	464, 749, 1896
BspTNI	GGTCTC	1 cut(s)	1915
BsrDI	GCAATG	4 cut(s)	76, 766, 1446, 1805
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	644, 797, 2116
BssAI	RCCGGY	1 cut(s)	684
BssECI	CCNNGG	8 cut(s)	61, 187, 326, 645, 1084, 1427, 1587, 1831
BssMI	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
BssNI	GRCGYC	1 cut(s)	985
BssT1I	CCWWGG	6 cut(s)	61, 326, 645, 1084, 1427, 1831
Bst2UI	CCWGG	3 cut(s)	189, 1629, 1706
Bst4CI	ACNGT	5 cut(s)	110, 553, 1177, 1400, 1572
Bst6I	CTCTTC	3 cut(s)	925, 1586, 1670
BstACI	GRCGYC	1 cut(s)	985
BstC8I	GCNNGC	5 cut(s)	356, 909, 1285, 1731, 1901
BstDEI	CTNAG	8 cut(s)	200, 208, 392, 651, 783, 875, 1065, 1491
BstDSI	CCRYGG	4 cut(s)	61, 645, 1427, 1587
BstF5I	GGATG	8 cut(s)	388, 1013, 1165, 1325, 1497, 1597, 1721, 1826
BstFNI	CGCG	1 cut(s)	1506
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	9 cut(s)	288, 427, 1208, 1390, 1497, 1642, 1764, 1825, 1869
BstMAI	GTCTC	4 cut(s)	1578, 1583, 1904, 1915
BstMBI	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
BstMWI	GCNNNNNNNGC	3 cut(s)	690, 777, 1886
BstNI	CCWGG	3 cut(s)	189, 1629, 1706
BstNSI	RCATGY	2 cut(s)	324, 1805
BstSCI	CCNGG	4 cut(s)	187, 1414, 1627, 1704
BstSFI	CTRYAG	3 cut(s)	27, 948, 1687
BstSLI	GKGCMC	1 cut(s)	1423
BstUI	CGCG	1 cut(s)	1506
BstV2I	GAAGAC	2 cut(s)	1090, 2082
BstX2I	RGATCY	1 cut(s)	1822
BstYI	RGATCY	1 cut(s)	1822
Bsu15I	ATCGAT	1 cut(s)	1000
BsuI	GTATCC	1 cut(s)	1953
BsuRI	GGCC	4 cut(s)	123, 614, 684, 765
BsuTUI	ATCGAT	1 cut(s)	1000
BtgI	CCRYGG	4 cut(s)	61, 645, 1427, 1587
BtgZI	GCGATG	1 cut(s)	1521
BtsCI	GGATG	8 cut(s)	388, 1013, 1165, 1325, 1497, 1597, 1721, 1826
BtsI	GCAGTG	3 cut(s)	705, 1421, 1881
BtsIMutI	CAGTG	5 cut(s)	705, 1182, 1421, 1881, 2109
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	5 cut(s)	356, 909, 1285, 1731, 1901
CaiI	CAGNNNCTG	3 cut(s)	215, 1214, 2063
CciI	TCATGA	1 cut(s)	1260
CfoI	GCGC	1 cut(s)	712
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	4 cut(s)	642, 1007, 1702, 2039
ClaI	ATCGAT	1 cut(s)	1000
CseI	GACGC	3 cut(s)	993, 1211, 1476
Csp6I	GTAC	3 cut(s)	465, 750, 1180
CviQI	GTAC	3 cut(s)	465, 750, 1180
DdeI	CTNAG	8 cut(s)	200, 208, 392, 651, 783, 875, 1065, 1491
DpnI	GATC	9 cut(s)	287, 426, 1207, 1389, 1496, 1641, 1763, 1824, 1868
DpnII	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
DraI	TTTAAA	1 cut(s)	1852
DrdI	GACNNNNNNGTC	1 cut(s)	1575
DseDI	GACNNNNNNGTC	1 cut(s)	1575
EaeI	YGGCCR	2 cut(s)	612, 682
Eam1104I	CTCTTC	3 cut(s)	925, 1586, 1670
EarI	CTCTTC	3 cut(s)	925, 1586, 1670
EciI	GGCGGA	1 cut(s)	1895
Ecl136II	GAGCTC	1 cut(s)	907
Eco130I	CCWWGG	6 cut(s)	61, 326, 645, 1084, 1427, 1831
Eco24I	GRGCYC	1 cut(s)	909
Eco31I	GGTCTC	1 cut(s)	1915
Eco32I	GATATC	1 cut(s)	1741
Eco47I	GGWCC	4 cut(s)	642, 1007, 1702, 2039
Eco53kI	GAGCTC	1 cut(s)	907
Eco57I	CTGAAG	2 cut(s)	824, 906
EcoICRI	GAGCTC	1 cut(s)	907
EcoRII	CCWGG	3 cut(s)	187, 1627, 1704
EcoRV	GATATC	1 cut(s)	1741
EcoT14I	CCWWGG	6 cut(s)	61, 326, 645, 1084, 1427, 1831
EcoT22I	ATGCAT	2 cut(s)	1024, 1807
EcoT38I	GRGCYC	1 cut(s)	909
ErhI	CCWWGG	6 cut(s)	61, 326, 645, 1084, 1427, 1831
Esp3I	CGTCTC	1 cut(s)	1583
FaqI	GGGAC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	867
FbaI	TGATCA	2 cut(s)	1387, 1866
Fnu4HI	GCNGC	1 cut(s)	988
FokI	GGATG	8 cut(s)	395, 1000, 1172, 1332, 1484, 1604, 1708, 1813
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	1 cut(s)	988
FspBI	CTAG	3 cut(s)	327, 576, 1817
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	1 cut(s)	988
GsuI	CTGGAG	2 cut(s)	237, 1611
HaeIII	GGCC	4 cut(s)	123, 614, 684, 765
HapII	CCGG	2 cut(s)	685, 1416
HgaI	GACGC	3 cut(s)	993, 1211, 1476
HhaI	GCGC	1 cut(s)	712
Hin1I	GRCGYC	1 cut(s)	985
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	9 cut(s)	158, 212, 232, 245, 871, 1139, 1440, 1841, 2060
HpaII	CCGG	2 cut(s)	685, 1416
HphI	GGTGA	5 cut(s)	280, 559, 1093, 1588, 2046
Hpy166II	GTNNAC	5 cut(s)	298, 388, 1180, 1343, 1421
Hpy188I	TCNGA	5 cut(s)	211, 523, 1492, 1797, 1846
Hpy188III	TCNNGA	8 cut(s)	216, 422, 1026, 1053, 1196, 1261, 1273, 1643
Hpy8I	GTNNAC	5 cut(s)	298, 388, 1180, 1343, 1421
Hpy99I	CGWCG	1 cut(s)	987
HpyAV	CCTTC	4 cut(s)	796, 1063, 1935, 2061
HpyCH4III	ACNGT	5 cut(s)	110, 553, 1177, 1400, 1572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	690, 777, 1886
HpyF3I	CTNAG	8 cut(s)	200, 208, 392, 651, 783, 875, 1065, 1491
Hsp92I	GRCGYC	1 cut(s)	985
HspAI	GCGC	1 cut(s)	710
KpnI	GGTACC	2 cut(s)	468, 753
Ksp22I	TGATCA	2 cut(s)	1387, 1866
Kzo9I	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
LmnI	GCTCC	2 cut(s)	363, 1618
LweI	GCATC	5 cut(s)	194, 1031, 1041, 1310, 1759
MaeI	CTAG	3 cut(s)	327, 576, 1817
MaeIII	GTNAC	4 cut(s)	547, 1331, 1594, 2065
MalI	GATC	9 cut(s)	287, 426, 1207, 1389, 1496, 1641, 1763, 1824, 1868
MboI	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
MboII	GAAGA	9 cut(s)	43, 830, 912, 1090, 1385, 1472, 1573, 1687, 2082
MflI	RGATCY	1 cut(s)	1822
MhlI	GDGCHC	2 cut(s)	909, 1423
MlsI	TGGCCA	1 cut(s)	614
MluNI	TGGCCA	1 cut(s)	614
MlyI	GAGTC	2 cut(s)	226, 1133
MmeI	TCCRAC	1 cut(s)	501
Mox20I	TGGCCA	1 cut(s)	614
Mph1103I	ATGCAT	2 cut(s)	1024, 1807
MroXI	GAANNNNTTC	1 cut(s)	1365
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	7 cut(s)	258, 312, 636, 675, 1851, 2030, 2116
MslI	CAYNNNNRTG	4 cut(s)	1338, 1426, 1506, 1755
Msp20I	TGGCCA	1 cut(s)	614
MspA1I	CMGCKG	2 cut(s)	844, 2012
MspI	CCGG	2 cut(s)	685, 1416
MspR9I	CCNGG	4 cut(s)	189, 1416, 1629, 1706
MvaI	CCWGG	3 cut(s)	189, 1629, 1706
MvnI	CGCG	1 cut(s)	1506
MwoI	GCNNNNNNNGC	3 cut(s)	690, 777, 1886
NciI	CCSGG	1 cut(s)	1416
NcoI	CCATGG	3 cut(s)	61, 645, 1427
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
NlaIV	GGNNCC	6 cut(s)	466, 501, 664, 751, 1824, 1898
NmuCI	GTSAC	4 cut(s)	547, 1331, 1594, 2065
NsiI	ATGCAT	2 cut(s)	1024, 1807
NspI	RCATGY	2 cut(s)	324, 1805
OliI	CACNNNNGTG	1 cut(s)	1338
PagI	TCATGA	1 cut(s)	1260
PcsI	WCGNNNNNNNCGW	2 cut(s)	1201, 1336
PdmI	GAANNNNTTC	1 cut(s)	1365
PfeI	GAWTC	7 cut(s)	158, 212, 245, 871, 1440, 1841, 2060
PflMI	CCANNNNNTGG	1 cut(s)	1832
PkrI	GCNGC	1 cut(s)	989
PleI	GAGTC	2 cut(s)	226, 1133
PpsI	GAGTC	2 cut(s)	226, 1133
PsiI	TTATAA	1 cut(s)	1650
Psp124BI	GAGCTC	1 cut(s)	909
Psp6I	CCWGG	3 cut(s)	187, 1627, 1704
PspGI	CCWGG	3 cut(s)	187, 1627, 1704
PspN4I	GGNNCC	6 cut(s)	466, 501, 664, 751, 1824, 1898
PspPI	GGNCC	4 cut(s)	642, 1007, 1702, 2039
PstNI	CAGNNNCTG	3 cut(s)	215, 1214, 2063
PsuI	RGATCY	1 cut(s)	1822
PvuII	CAGCTG	2 cut(s)	844, 2012
RsaI	GTAC	3 cut(s)	466, 751, 1181
RsaNI	GTAC	3 cut(s)	465, 750, 1180
RseI	CAYNNNNRTG	4 cut(s)	1338, 1426, 1506, 1755
SacI	GAGCTC	1 cut(s)	909
SaqAI	TTAA	7 cut(s)	258, 312, 636, 675, 1851, 2030, 2116
SatI	GCNGC	1 cut(s)	988
Sau3AI	GATC	9 cut(s)	285, 424, 1205, 1387, 1494, 1639, 1761, 1822, 1866
Sau96I	GGNCC	4 cut(s)	642, 1007, 1702, 2039
SchI	GAGTC	2 cut(s)	226, 1133
ScrFI	CCNGG	4 cut(s)	189, 1416, 1629, 1706
SduI	GDGCHC	2 cut(s)	909, 1423
SfaNI	GCATC	5 cut(s)	194, 1031, 1041, 1310, 1759
SfcI	CTRYAG	3 cut(s)	27, 948, 1687
SinI	GGWCC	4 cut(s)	642, 1007, 1702, 2039
SmiMI	CAYNNNNRTG	4 cut(s)	1338, 1426, 1506, 1755
SsiI	CCGC	4 cut(s)	660, 988, 1504, 1880
SspI	AATATT	2 cut(s)	176, 527
SspMI	CTAG	3 cut(s)	327, 576, 1817
SstI	GAGCTC	1 cut(s)	909
StyD4I	CCNGG	4 cut(s)	187, 1414, 1627, 1704
StyI	CCWWGG	6 cut(s)	61, 326, 645, 1084, 1427, 1831
TaaI	ACNGT	5 cut(s)	110, 553, 1177, 1400, 1572
TaqI	TCGA	6 cut(s)	1000, 1027, 1137, 1272, 1438, 1753
TatI	WGTACW	1 cut(s)	1179
TauI	GCSGC	1 cut(s)	990
TfiI	GAWTC	7 cut(s)	158, 212, 245, 871, 1440, 1841, 2060
Tru1I	TTAA	7 cut(s)	258, 312, 636, 675, 1851, 2030, 2116
Tru9I	TTAA	7 cut(s)	258, 312, 636, 675, 1851, 2030, 2116
TscAI	CASTG	5 cut(s)	712, 1182, 1428, 1881, 2116
TseFI	GTSAC	4 cut(s)	547, 1331, 1594, 2065
Tsp45I	GTSAC	4 cut(s)	547, 1331, 1594, 2065
TspGWI	ACGGA	2 cut(s)	503, 1604
TspRI	CASTG	5 cut(s)	712, 1182, 1428, 1881, 2116
Van91I	CCANNNNNTGG	1 cut(s)	1832
VneI	GTGCAC	1 cut(s)	1419
VpaK11BI	GGWCC	4 cut(s)	642, 1007, 1702, 2039
XapI	RAATTY	2 cut(s)	884, 1791
XceI	RCATGY	2 cut(s)	324, 1805
XcmI	CCANNNNNNNNNTGG	2 cut(s)	176, 448
XmaJI	CCTAGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	1365
XspI	CTAG	3 cut(s)	327, 576, 1817
Zsp2I	ATGCAT	2 cut(s)	1024, 1807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.