Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

67479541 .. 67480648

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGGTTGGCGTCGCCGTTTTCTGTGATTAAGAGTTTTGAGTCCGAGTTTGGGACTGAGTTGACTCGGAGACTAGCGACGAGTGAGTCGAGGAAGAGGAAGAGCGTGAGGCCGCGAGTGGTGCTGCTTCGGAATTTGAGGAATGAAATGCCATCGATGGAGATGAAGAGGACCACGAAGGTTTTCGGGATAGGGAAGGGGGTGGACGGTGCTCGAGTCTTGCTGGTAGTAGAGGCGGTGAATTTTGGGGTGAGCCTCGTGCTTTCCAGACCAGCCAGAGGCGAGATGACGACGGCGTGGGCATGGAGAGGCCGTGATTTCTACTGCAACGCCGTTGGGATCTTGACCCAGTTTCTCGAAGGCTCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPL1

Protein Analysis

124

Amino Acids

13.77

Weight (kDa)

11.07

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	115
AciI	CCGC	2 cut(s)	113, 236
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	133, 241
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	51, 278
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	110, 310
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	133, 241
Asp700I	GAANNNNTTC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	250, 262
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	171
BauI	CACGAG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	2 cut(s)	151, 160
BceAI	ACGGC	3 cut(s)	297, 309, 317
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	2 cut(s)	113, 125
BlsI	GCNGC	2 cut(s)	114, 126
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	364
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 278
Bse1I	ACTGG	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	51, 278
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	112, 312
BshVI	ATCGAT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	51, 278
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	112, 312
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	2 cut(s)	113, 236
BspANI	GGCC	2 cut(s)	112, 312
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	347
BspQI	GCTCTTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	3 cut(s)	89, 95, 161
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
Bsu15I	ATCGAT	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	112, 312
BsuTUI	ATCGAT	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	155
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	5 cut(s)	112, 255, 275, 312, 363
CviKI_1	RGCY	5 cut(s)	112, 255, 275, 312, 363
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	3 cut(s)	89, 95, 161
EarI	CTCTTC	3 cut(s)	89, 95, 161
Eco47I	GGWCC	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	213
FaeI	CATG	1 cut(s)	306
FaiI	YATR	1 cut(s)	304
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	302
Fnu4HI	GCNGC	2 cut(s)	113, 125
Fsp4HI	GCNGC	2 cut(s)	113, 125
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	113, 125
HaeIII	GGCC	2 cut(s)	112, 312
HapII	CCGG	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	4 cut(s)	41, 64, 86, 216
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	250, 262
Hpy166II	GTNNAC	2 cut(s)	63, 205
Hpy188I	TCNGA	3 cut(s)	46, 69, 132
Hpy188III	TCNNGA	4 cut(s)	187, 267, 343, 356
Hpy8I	GTNNAC	2 cut(s)	63, 205
Hpy99I	CGWCG	3 cut(s)	16, 82, 295
HpyAV	CCTTC	3 cut(s)	172, 190, 353
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	339
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	5 cut(s)	209, 280, 285, 289, 362
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	74
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	3 cut(s)	106, 112, 178
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	2 cut(s)	133, 241
MlyI	GAGTC	4 cut(s)	50, 58, 95, 225
MnlI	CCTC	9 cut(s)	84, 90, 102, 132, 162, 226, 266, 272, 302
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	30
MspI	CCGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	1 cut(s)	306
NlaIV	GGNNCC	1 cut(s)	364
PaeR7I	CTCGAG	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	114, 126
PleI	GAGTC	4 cut(s)	49, 58, 94, 224
PpsI	GAGTC	4 cut(s)	49, 58, 94, 224
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	113, 125
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	4 cut(s)	50, 58, 95, 225
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	2 cut(s)	8, 183
Sfr274I	CTCGAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	133, 241
SsiI	CCGC	2 cut(s)	113, 236
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	4 cut(s)	89, 155, 214, 357
TasI	AATT	2 cut(s)	133, 241
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	159, 179
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	2 cut(s)	133, 241
XhoI	CTCGAG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.