Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Forward (+)

42025400 .. 42030044

Gene Structure 4645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGTCATCACCTATCTCTTACCTCCTTGCAGCTCTTCTCTCACTCTTGTTATTCAACTTCCATGGAAGCAAAGCCGACTTTGTACCCACAAAAAATTGCCCCACGTACAATTGTGGTAATGGCCCTGATTTTCACTACCCTTTTTGGAAAATTGAAGACTCCACCGCCGATCAATATTGTGGTTACCCTGGTTTTGGTCTCAATTGCTCAGAGTCCGGAGAGCCAATACTAAGTCTCCCAAATAATGACTCCTACTATGTGAAAGGCATAAACTATATTGATTCCACCATCACCCTTGTTGACATCGACGTCTTCGATCAACAATGCCCTAGGCCAAGACACAGTATTAGTGTAGGCACGCTCCCATTGGATTATTCCCCATTGGATGTGAACCTGAGCTTCTACTTCAACTGCACTTCCTTTCCTGATCCTGTTGTGCCTCCCATAATCTGCTTGGCAATATGGGGTACCAAAATGTCGTATGTTATCATGAAAGGAGAGCAATCAGATGGGTTTGATTGGTCTGAAAGTTGTGAGGATAATGTGGTGGTGACTGTGATGAAGACTAAAGAGCTTTATATTATTTTTGATGAGTTGACTGGTGATTTTGGAGGGCTTATGAACCAGGGGTTTGTGCTAAACTGGACCACGGGGAAGGAGTGCGCTTCGTGTGAGAGTGGTGGTGGTTTGTGTGGGTACAGTCCCACTAAAGCTGATGAGTATCTCTGCTTCTGCAAATATGGCAATGACCTATGCAGGAAGAAAGGCCCTAAGTTCAACTGGAGATTGAAGGTTGTCGGAGGTCTTTGCTCGGTTATGGGAACTATAGCTGCAATGTGCTTCATTTTCTTTATATGGCGACGCCGCAACAGAAATCAATATGGTCCATCATCCTATGCATCTCAAAGCATCTATTCTAAAAGCTATTCTAGAAGTGATACTAAGAAGGCAAGTGCATACCCTGGAGTTCATGTCTTCACTTACAACGAACTTGAACAAGCAACAAACTATTTCGATTCATCTAAAAAACTTGGTGATGGAGGATTTGGCACTGTTTACTATGGAAGAGTCCGTGATGGGCGAGCAGTTGCTGTCAAGCGACTATATGAAACCAATTGCAAGAGAGTTGAGCAGTTCCTGAATGAAATTGAGATTTTAGGTCGCCTACGCCACCAAAACCTTGTCTTACTCTATGGATGCACCTCTCGTCACAGCCGTGAACTCCTCCTTGTCTACGAATATGTTCCCAATGGAACTCTTGCTAATCATCTTCAGGGTGGAAAAGCAAAACCCGGTGCACTGCCATGGCATACTCGAATCAACATTGCCGTAGAAACTGCAAGTGCATTGTCCTATCTTCATGCGTCTGAGATCATCCACCGCGATGTGAAAACCACTAACATTCTCCTCGACAACAATTTCTGTGTCAAAGTAGCAGATTTTGGACTATCTCGTCTCTTTCCCATGGATGTCACCCATGTATCAACTGCTCCACAAGGAACTCCAGGTTATGTCGATCCTGATTATTACCAATGCTACCAGCTTACTACAAAGAGTGATGTCTATAGCTTCGGTGTGGTCCTGGTTGAACTCATATCATCCTTGCCTGCTGTTGATATCACAAGGCATCGACAGGAGATCAATTTGTCTAACATGGCTATCAACAAGATTCAGAAAAATGCATTGCATGAGCTAGTTGATCCATCCCTGGGGTATGAATCAGACTTTAAAGTAAGAAAAATGATCAATGCAGTGGCGGAATTAGCGTTTCGGTGCCTGCAAAATGAGACGGACATGAGACCTTCTATGGTTGATGTGGAAAATGAACTAAAGAGGATACAGAGTGATGATTTTAGCAAAGAAAAAGGCAGAGGAAATAGATATTTCAGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0036211 GO:0042221 GO:0042631 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

631

Amino Acids

70.98

Weight (kDa)

6.51

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	33 - 101	5.9e-18	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	159 - 246	2e-15	Wall-associated receptor kinase C-terminal
Pkinase	PF00069	339 - 606	3.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	341 - 610	6.6e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	308, 1452
AatII	GACGTC	1 cut(s)	312
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	2 cut(s)	467, 1773
AccI	GTMKAC	1 cut(s)	1233
AccII	CGCG	1 cut(s)	1383
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	4 cut(s)	165, 865, 1381, 1757
AclWI	GGATC	3 cut(s)	422, 1511, 1694
AcuI	CTGAAG	1 cut(s)	1256
AcyI	GRCGYC	2 cut(s)	309, 862
AfaI	GTAC	4 cut(s)	84, 107, 469, 698
AfiI	CCNNNNNNNGG	2 cut(s)	194, 1709
AgsI	TTSAA	7 cut(s)	55, 155, 409, 778, 790, 995, 1589
AjnI	CCWGG	6 cut(s)	187, 624, 961, 1504, 1581, 1707
AleI	CACNNNNGTG	1 cut(s)	1215
AluBI	AGCT	9 cut(s)	32, 399, 574, 713, 830, 924, 1543, 1569, 1693
AluI	AGCT	9 cut(s)	32, 399, 574, 713, 830, 924, 1543, 1569, 1693
Alw21I	GWGCWC	1 cut(s)	1300
Alw26I	GTCTC	5 cut(s)	203, 239, 1460, 1781, 1792
Alw44I	GTGCAC	1 cut(s)	1296
AlwI	GGATC	3 cut(s)	422, 1511, 1694
AlwNI	CAGNNNCTG	2 cut(s)	1091, 1138
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	3 cut(s)	121, 332, 766
ApaLI	GTGCAC	1 cut(s)	1296
ApeKI	GCWGC	2 cut(s)	29, 830
Asp700I	GAANNNNTTC	1 cut(s)	1242
Asp718I	GGTACC	1 cut(s)	467
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	665
AspS9I	GGNCC	5 cut(s)	122, 645, 767, 884, 1579
AsuC2I	CCSGG	1 cut(s)	1293
AsuHPI	GGTGA	5 cut(s)	283, 562, 614, 1046, 1465
AvaII	GGWCC	3 cut(s)	645, 884, 1579
AvrII	CCTAGG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	1300
BaeI	ACNNNNGTAYC	2 cut(s)	1464, 1497
BanI	GGYRCC	2 cut(s)	467, 1773
BarI	GAAGNNNNNNTAC	2 cut(s)	713, 745
BbsI	GAAGAC	4 cut(s)	162, 304, 569, 967
Bbv12I	GWGCWC	1 cut(s)	1300
BbvI	GCAGC	2 cut(s)	41, 817
BccI	CCATC	6 cut(s)	296, 503, 895, 1031, 1070, 1711
BceAI	ACGGC	2 cut(s)	1200, 1313
BciT130I	CCWGG	6 cut(s)	189, 626, 963, 1506, 1583, 1709
BciVI	GTATCC	1 cut(s)	1830
BclI	TGATCA	1 cut(s)	1743
BcnI	CCSGG	1 cut(s)	1293
BcoDI	GTCTC	5 cut(s)	203, 239, 1460, 1781, 1792
BfaI	CTAG	3 cut(s)	330, 930, 1694
BfmI	CTRYAG	2 cut(s)	825, 1564
BfuI	GTATCC	1 cut(s)	1830
BisI	GCNGC	3 cut(s)	30, 831, 865
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	3 cut(s)	31, 832, 866
Bme1390I	CCNGG	7 cut(s)	189, 626, 963, 1293, 1506, 1583, 1709
Bme18I	GGWCC	3 cut(s)	645, 884, 1579
BmgT120I	GGNCC	5 cut(s)	122, 645, 767, 884, 1579
BmiI	GGNNCC	2 cut(s)	469, 1775
BmrFI	CCNGG	7 cut(s)	189, 626, 963, 1293, 1506, 1583, 1709
BmsI	GCATC	4 cut(s)	908, 918, 1187, 1636
BpiI	GAAGAC	4 cut(s)	162, 304, 569, 967
BpmI	CTGGAG	3 cut(s)	802, 984, 1488
Bpu10I	CCTNAGC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	1293
BsaAI	YACGTR	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	2 cut(s)	309, 862
BsaI	GGTCTC	2 cut(s)	203, 1792
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 957, 987
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 1709
Bse1I	ACTGG	3 cut(s)	604, 647, 785
Bse3DI	GCAATG	4 cut(s)	751, 840, 1323, 1682
Bse8I	GATNNNNATC	1 cut(s)	720
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	6 cut(s)	189, 626, 963, 1506, 1583, 1709
BseGI	GGATG	7 cut(s)	391, 890, 1202, 1374, 1474, 1598, 1703
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	194, 1709
BseMI	GCAATG	4 cut(s)	751, 840, 1323, 1682
BseMII	CTCAG	3 cut(s)	222, 386, 1359
BseNI	ACTGG	3 cut(s)	604, 647, 785
BseRI	GAGGAG	2 cut(s)	1214, 1397
BseSI	GKGCMC	1 cut(s)	1300
BseXI	GCAGC	2 cut(s)	41, 817
BsgI	GTGCAG	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	1383
BshFI	GGCC	3 cut(s)	123, 334, 768
BshNI	GGYRCC	2 cut(s)	467, 1773
BsiHKAI	GWGCWC	1 cut(s)	1300
BsiSI	CCGG	2 cut(s)	216, 1293
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	2 cut(s)	194, 1709
BsmAI	GTCTC	5 cut(s)	203, 239, 1460, 1781, 1792
BsmBI	CGTCTC	2 cut(s)	1460, 1781
BsmFI	GGGAC	1 cut(s)	687
BsnI	GGCC	3 cut(s)	123, 334, 768
Bso31I	GGTCTC	2 cut(s)	203, 1792
Bsp1286I	GDGCHC	1 cut(s)	1300
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
Bsp19I	CCATGG	3 cut(s)	61, 1304, 1464
BspACI	CCGC	4 cut(s)	165, 865, 1381, 1757
BspANI	GGCC	3 cut(s)	123, 334, 768
BspCNI	CTCAG	3 cut(s)	221, 387, 1360
BspEI	TCCGGA	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	1383
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	469, 1775
BspPI	GGATC	3 cut(s)	422, 1511, 1694
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	2 cut(s)	467, 1773
BspTNI	GGTCTC	2 cut(s)	203, 1792
BsrDI	GCAATG	4 cut(s)	751, 840, 1323, 1682
BsrI	ACTGG	3 cut(s)	604, 647, 785
BssMI	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
BssNI	GRCGYC	2 cut(s)	309, 862
BssT1I	CCWWGG	4 cut(s)	61, 329, 1304, 1464
Bst2UI	CCWGG	6 cut(s)	189, 626, 963, 1506, 1583, 1709
Bst4CI	ACNGT	4 cut(s)	344, 556, 701, 1054
Bst6I	CTCTTC	2 cut(s)	39, 1060
BstACI	GRCGYC	2 cut(s)	309, 862
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	359, 1083, 1608, 1778
BstDEI	CTNAG	6 cut(s)	208, 230, 395, 771, 942, 1368
BstDSI	CCRYGG	4 cut(s)	61, 648, 1304, 1464
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	7 cut(s)	391, 890, 1202, 1374, 1474, 1598, 1703
BstFNI	CGCG	1 cut(s)	1383
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	8 cut(s)	172, 319, 430, 1374, 1519, 1641, 1702, 1746
BstMAI	GTCTC	5 cut(s)	203, 239, 1460, 1781, 1792
BstMBI	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
BstMWI	GCNNNNNNNGC	2 cut(s)	741, 1763
BstNI	CCWGG	6 cut(s)	189, 626, 963, 1506, 1583, 1709
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	7 cut(s)	187, 624, 961, 1291, 1504, 1581, 1707
BstSFI	CTRYAG	2 cut(s)	825, 1564
BstSLI	GKGCMC	1 cut(s)	1300
BstUI	CGCG	1 cut(s)	1383
BstV1I	GCAGC	2 cut(s)	41, 817
BstV2I	GAAGAC	4 cut(s)	162, 304, 569, 967
BsuI	GTATCC	1 cut(s)	1830
BsuRI	GGCC	3 cut(s)	123, 334, 768
BtgI	CCRYGG	4 cut(s)	61, 648, 1304, 1464
BtgZI	GCGATG	1 cut(s)	1398
BtsCI	GGATG	7 cut(s)	391, 890, 1202, 1374, 1474, 1598, 1703
BtsI	GCAGTG	2 cut(s)	1298, 1758
BtsIMutI	CAGTG	3 cut(s)	1050, 1298, 1758
Cac8I	GCNNGC	4 cut(s)	359, 1083, 1608, 1778
CaiI	CAGNNNCTG	2 cut(s)	1091, 1138
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	1 cut(s)	665
Cfr13I	GGNCC	5 cut(s)	122, 645, 767, 884, 1579
CseI	GACGC	2 cut(s)	870, 1353
Csp6I	GTAC	4 cut(s)	83, 106, 468, 697
CviQI	GTAC	4 cut(s)	83, 106, 468, 697
DdeI	CTNAG	6 cut(s)	208, 230, 395, 771, 942, 1368
DpnI	GATC	8 cut(s)	171, 318, 429, 1373, 1518, 1640, 1701, 1745
DpnII	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
DraI	TTTAAA	1 cut(s)	1729
DrdI	GACNNNNNNGTC	2 cut(s)	308, 1452
DseDI	GACNNNNNNGTC	2 cut(s)	308, 1452
Eam1104I	CTCTTC	2 cut(s)	39, 1060
EarI	CTCTTC	2 cut(s)	39, 1060
EciI	GGCGGA	1 cut(s)	1772
Eco130I	CCWWGG	4 cut(s)	61, 329, 1304, 1464
Eco31I	GGTCTC	2 cut(s)	203, 1792
Eco32I	GATATC	1 cut(s)	1618
Eco47I	GGWCC	3 cut(s)	645, 884, 1579
Eco57I	CTGAAG	1 cut(s)	1256
Eco91I	GGTNACC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	767
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	6 cut(s)	187, 624, 961, 1504, 1581, 1707
EcoRV	GATATC	1 cut(s)	1618
EcoT14I	CCWWGG	4 cut(s)	61, 329, 1304, 1464
EcoT22I	ATGCAT	2 cut(s)	901, 1684
ErhI	CCWWGG	4 cut(s)	61, 329, 1304, 1464
Esp3I	CGTCTC	2 cut(s)	1460, 1781
FaqI	GGGAC	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	1743
FblI	GTMKAC	1 cut(s)	1233
Fnu4HI	GCNGC	3 cut(s)	30, 831, 865
FokI	GGATG	7 cut(s)	398, 877, 1209, 1361, 1481, 1585, 1690
Fsp4HI	GCNGC	3 cut(s)	30, 831, 865
FspBI	CTAG	3 cut(s)	330, 930, 1694
GlaI	GCGC	1 cut(s)	664
GluI	GCNGC	3 cut(s)	30, 831, 865
GsuI	CTGGAG	3 cut(s)	802, 984, 1488
HaeIII	GGCC	3 cut(s)	123, 334, 768
HapII	CCGG	2 cut(s)	216, 1293
HgaI	GACGC	2 cut(s)	870, 1353
HhaI	GCGC	1 cut(s)	665
Hin1I	GRCGYC	2 cut(s)	309, 862
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HincII	GTYRAC	2 cut(s)	301, 597
HindII	GTYRAC	2 cut(s)	301, 597
HinfI	GANTC	9 cut(s)	158, 212, 248, 281, 1016, 1068, 1317, 1669, 1718
HpaII	CCGG	2 cut(s)	216, 1293
HphI	GGTGA	5 cut(s)	283, 562, 614, 1046, 1465
Hpy166II	GTNNAC	7 cut(s)	301, 391, 597, 1057, 1220, 1234, 1298
Hpy188I	TCNGA	7 cut(s)	211, 508, 526, 800, 1369, 1674, 1723
Hpy188III	TCNNGA	6 cut(s)	216, 425, 490, 930, 1138, 1520
Hpy8I	GTNNAC	7 cut(s)	301, 391, 597, 1057, 1220, 1234, 1298
Hpy99I	CGWCG	2 cut(s)	311, 864
HpyAV	CCTTC	4 cut(s)	649, 784, 940, 1812
HpyCH4III	ACNGT	4 cut(s)	344, 556, 701, 1054
HpyCH4IV	ACGT	2 cut(s)	104, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	741, 1763
HpyF3I	CTNAG	6 cut(s)	208, 230, 395, 771, 942, 1368
HpySE526I	ACGT	2 cut(s)	104, 309
Hsp92I	GRCGYC	2 cut(s)	309, 862
HspAI	GCGC	1 cut(s)	663
Kpn2I	TCCGGA	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	471
Ksp22I	TGATCA	1 cut(s)	1743
Kzo9I	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	366, 1495
Lsp1109I	GCAGC	2 cut(s)	41, 817
LweI	GCATC	4 cut(s)	908, 918, 1187, 1636
MaeI	CTAG	3 cut(s)	330, 930, 1694
MaeII	ACGT	2 cut(s)	104, 309
MaeIII	GTNAC	4 cut(s)	182, 550, 1208, 1471
MalI	GATC	8 cut(s)	171, 318, 429, 1373, 1518, 1640, 1701, 1745
MboI	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
MboII	GAAGA	9 cut(s)	26, 167, 304, 574, 772, 967, 1077, 1262, 1349
MfeI	CAATTG	3 cut(s)	109, 202, 1114
MhlI	GDGCHC	1 cut(s)	1300
MluCI	AATT	9 cut(s)	94, 109, 150, 202, 1114, 1146, 1417, 1642, 1760
MlyI	GAGTC	4 cut(s)	152, 221, 242, 1077
MmeI	TCCRAC	1 cut(s)	778
Mph1103I	ATGCAT	2 cut(s)	901, 1684
MroI	TCCGGA	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	1242
MseI	TTAA	1 cut(s)	1728
MslI	CAYNNNNRTG	3 cut(s)	1215, 1303, 1383
MspI	CCGG	2 cut(s)	216, 1293
MspR9I	CCNGG	7 cut(s)	189, 626, 963, 1293, 1506, 1583, 1709
MunI	CAATTG	3 cut(s)	109, 202, 1114
MvaI	CCWGG	6 cut(s)	189, 626, 963, 1506, 1583, 1709
MvnI	CGCG	1 cut(s)	1383
MwoI	GCNNNNNNNGC	2 cut(s)	741, 1763
NciI	CCSGG	1 cut(s)	1293
NcoI	CCATGG	3 cut(s)	61, 1304, 1464
NdeII	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
NlaIV	GGNNCC	2 cut(s)	469, 1775
NmuCI	GTSAC	3 cut(s)	550, 1208, 1471
NsiI	ATGCAT	2 cut(s)	901, 1684
OliI	CACNNNNGTG	1 cut(s)	1215
PagI	TCATGA	1 cut(s)	489
PasI	CCCWGGG	1 cut(s)	1708
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 1213
PdmI	GAANNNNTTC	1 cut(s)	1242
PfeI	GAWTC	5 cut(s)	281, 1016, 1317, 1669, 1718
PkrI	GCNGC	3 cut(s)	31, 832, 866
PleI	GAGTC	4 cut(s)	152, 220, 242, 1076
PpsI	GAGTC	4 cut(s)	152, 220, 242, 1076
Ppu21I	YACGTR	1 cut(s)	105
Psp6I	CCWGG	6 cut(s)	187, 624, 961, 1504, 1581, 1707
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	6 cut(s)	187, 624, 961, 1504, 1581, 1707
PspN4I	GGNNCC	2 cut(s)	469, 1775
PspPI	GGNCC	5 cut(s)	122, 645, 767, 884, 1579
PstNI	CAGNNNCTG	2 cut(s)	1091, 1138
RsaI	GTAC	4 cut(s)	84, 107, 469, 698
RsaNI	GTAC	4 cut(s)	83, 106, 468, 697
RseI	CAYNNNNRTG	3 cut(s)	1215, 1303, 1383
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	1728
SatI	GCNGC	3 cut(s)	30, 831, 865
Sau3AI	GATC	8 cut(s)	169, 316, 427, 1371, 1516, 1638, 1699, 1743
Sau96I	GGNCC	5 cut(s)	122, 645, 767, 884, 1579
SchI	GAGTC	4 cut(s)	152, 221, 242, 1077
ScrFI	CCNGG	7 cut(s)	189, 626, 963, 1293, 1506, 1583, 1709
SduI	GDGCHC	1 cut(s)	1300
SfaNI	GCATC	4 cut(s)	908, 918, 1187, 1636
SfcI	CTRYAG	2 cut(s)	825, 1564
SinI	GGWCC	3 cut(s)	645, 884, 1579
SmiMI	CAYNNNNRTG	3 cut(s)	1215, 1303, 1383
Sse9I	AATT	9 cut(s)	94, 109, 150, 202, 1114, 1146, 1417, 1642, 1760
SsiI	CCGC	4 cut(s)	165, 865, 1381, 1757
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	3 cut(s)	330, 930, 1694
StyD4I	CCNGG	7 cut(s)	187, 624, 961, 1291, 1504, 1581, 1707
StyI	CCWWGG	4 cut(s)	61, 329, 1304, 1464
TaaI	ACNGT	4 cut(s)	344, 556, 701, 1054
TaiI	ACGT	2 cut(s)	107, 312
TaqI	TCGA	7 cut(s)	306, 315, 1014, 1315, 1410, 1515, 1630
TasI	AATT	9 cut(s)	94, 109, 150, 202, 1114, 1146, 1417, 1642, 1760
TauI	GCSGC	1 cut(s)	867
TfiI	GAWTC	5 cut(s)	281, 1016, 1317, 1669, 1718
Tru1I	TTAA	1 cut(s)	1728
Tru9I	TTAA	1 cut(s)	1728
TscAI	CASTG	3 cut(s)	1057, 1305, 1758
TseFI	GTSAC	3 cut(s)	550, 1208, 1471
TseI	GCWGC	2 cut(s)	29, 830
Tsp45I	GTSAC	3 cut(s)	550, 1208, 1471
TspGWI	ACGGA	2 cut(s)	1061, 1805
TspRI	CASTG	3 cut(s)	1057, 1305, 1758
VneI	GTGCAC	1 cut(s)	1296
VpaK11BI	GGWCC	3 cut(s)	645, 884, 1579
XbaI	TCTAGA	1 cut(s)	929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmaJI	CCTAGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	1233
XmnI	GAANNNNTTC	1 cut(s)	1242
XspI	CTAG	3 cut(s)	330, 930, 1694
ZraI	GACGTC	1 cut(s)	310
Zsp2I	ATGCAT	2 cut(s)	901, 1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.