Rh7AG070600

Wall-associated receptor kinase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000786
Physical Location & Seq
Reverse (-)
4963967 .. 4964857
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG070600.1

Sequence Viewer

Length: 891 bp
ATGTCATCTGCTCGTTTGTACCTCCTTGCAGCTCTTCTCTCACCCCTGTTATTCAACTTCCATGGAAGCAAAGCCAACTTTGTACCCACAAAAAATTGCCCCATATACAATTGTAGTAATGGCCCTGATTTTCACTACCCTTTTTGGAAAATTGAAGACTCCACCGCCGATCAATATTGTGGTTACCCTGGTTTTGGTCTCAATTGCTCAGAGTCTGGAGAGCCCATACTGAGTCTCCCAAATAATGATTTCTACTATGTGAAAGACATAAACTTTACTGATTCCACCATCACCCTTGTTAACATTGACGTCGTCGGTCAACAATGCCCTAAGCCAAGACACAGTATGAGTGTAGGCACGCTCCCATTGGATTATTCCCCATTGGATGTGAACCTGAGCTTCTACTTCAACTGCACTTCCTTTCCTGGTCCTCCCAAAACCTGCTTGGGATTAGATGGTACCAAAAATTCTTATGTAATCACTGAGGGAGAGCAGCCAAGTTGGTTTGATTGGTCTGAAAGTTGTGAGGAGAATGTGGTGGTGACTGTGATGAAGAGTAAGGAGCTTTATATTGATGAGTTGACTGGTGATTTTGGAGAGCTTATGAAGCAGGGGTTTGTGCTTAACTGGACCACGGCGAAGGAGTGCGCTTCGTGTGAGAGTGGTGGTGGTTTGTGTGGGTACAAACCCACTAAAGCTGATGAGTTTCTCTGCTTCTGCAAATATAGTGATGGCCTATGCGAGAAGAAAGGTATGCCGTATGCTCCTTTGTTCCTTAATCCTTTCGTAACTTTAAAATCTGCTTGGGCCCAGGTTTGGTATGCCTTCTGCTCTTGTTTGGGTCATATTGATGGGCTTGGGTATGTTCATTGGGCTGGATGGCTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

296

Amino Acids

32.96

Weight (kDa)

4.78

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 33 - 100 3.6e-16 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 148 - 241 1.3e-18 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 449
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AciI CCGC 1 cut(s) 165
AcsI RAATTY 1 cut(s) 466
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 4 cut(s) 20, 84, 460, 683
AfiI CCNNNNNNNGG 2 cut(s) 194, 816
AgsI TTSAA 3 cut(s) 55, 155, 409
AjnI CCWGG 3 cut(s) 187, 424, 810
AluBI AGCT 5 cut(s) 32, 399, 565, 601, 698
AluI AGCT 5 cut(s) 32, 399, 565, 601, 698
Alw26I GTCTC 2 cut(s) 203, 239
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 3 cut(s) 121, 733, 807
ApaI GGGCCC 1 cut(s) 811
ApeKI GCWGC 2 cut(s) 29, 493
ApoI RAATTY 1 cut(s) 466
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 650
AspS9I GGNCC 5 cut(s) 122, 428, 630, 807, 808
AsuHPI GGTGA 4 cut(s) 33, 283, 553, 599
AvaII GGWCC 2 cut(s) 428, 630
BaeGI GKGCMC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 2 cut(s) 225, 811
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 41, 505
BccI CCATC 5 cut(s) 296, 449, 725, 845, 873
BceAI ACGGC 2 cut(s) 651, 742
BciT130I CCWGG 3 cut(s) 189, 426, 812
BcoDI GTCTC 2 cut(s) 203, 239
BfaI CTAG 1 cut(s) 884
BfuAI ACCTGC 1 cut(s) 449
BisI GCNGC 2 cut(s) 30, 494
BlsI GCNGC 2 cut(s) 31, 495
Bme1390I CCNGG 3 cut(s) 189, 426, 812
Bme18I GGWCC 2 cut(s) 428, 630
BmgT120I GGNCC 5 cut(s) 122, 428, 630, 807, 808
BmiI GGNNCC 2 cut(s) 460, 809
BmrFI CCNGG 3 cut(s) 189, 426, 812
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 2 cut(s) 330, 395
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 4 cut(s) 61, 187, 633, 810
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 816
Bse1I ACTGG 2 cut(s) 589, 632
BseBI CCWGG 3 cut(s) 189, 426, 812
BseDI CCNNGG 4 cut(s) 61, 187, 633, 810
BseGI GGATG 2 cut(s) 391, 884
BseLI CCNNNNNNNGG 2 cut(s) 194, 816
BseMII CTCAG 4 cut(s) 221, 222, 386, 474
BseNI ACTGG 2 cut(s) 589, 632
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 811
BseXI GCAGC 2 cut(s) 41, 505
BsgI GTGCAG 1 cut(s) 397
BshFI GGCC 3 cut(s) 123, 735, 809
BshNI GGYRCC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 194, 816
BsmAI GTCTC 2 cut(s) 203, 239
BsnI GGCC 3 cut(s) 123, 735, 809
Bso31I GGTCTC 1 cut(s) 203
Bsp120I GGGCCC 1 cut(s) 807
Bsp1286I GDGCHC 2 cut(s) 225, 811
Bsp143I GATC 1 cut(s) 169
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 1 cut(s) 165
BspANI GGCC 3 cut(s) 123, 735, 809
BspCNI CTCAG 4 cut(s) 221, 222, 387, 475
BspLI GGNNCC 2 cut(s) 460, 809
BspMI ACCTGC 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 589, 632
BssECI CCNNGG 4 cut(s) 61, 187, 633, 810
BssMI GATC 1 cut(s) 169
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 3 cut(s) 189, 426, 812
Bst4CI ACNGT 2 cut(s) 344, 547
Bst6I CTCTTC 2 cut(s) 39, 548
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 5 cut(s) 208, 230, 330, 395, 483
BstDSI CCRYGG 2 cut(s) 61, 633
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 2 cut(s) 391, 884
BstHHI GCGC 1 cut(s) 650
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 203, 239
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 607
BstNI CCWGG 3 cut(s) 189, 426, 812
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 187, 424, 810
BstSLI GKGCMC 1 cut(s) 811
BstV1I GCAGC 2 cut(s) 41, 505
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 3 cut(s) 123, 735, 809
BtgI CCRYGG 2 cut(s) 61, 633
BtsCI GGATG 2 cut(s) 391, 884
BtsIMutI CAGTG 1 cut(s) 480
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 650
Cfr13I GGNCC 5 cut(s) 122, 428, 630, 807, 808
Csp6I GTAC 4 cut(s) 19, 83, 459, 682
CviAII CATG 1 cut(s) 62
CviQI GTAC 4 cut(s) 19, 83, 459, 682
DdeI CTNAG 5 cut(s) 208, 230, 330, 395, 483
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
DraI TTTAAA 1 cut(s) 795
Eam1104I CTCTTC 2 cut(s) 39, 548
EarI CTCTTC 2 cut(s) 39, 548
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 2 cut(s) 225, 811
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 428, 630
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 187, 424, 810
EcoT14I CCWWGG 1 cut(s) 61
EcoT38I GRGCYC 2 cut(s) 225, 811
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 65
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 30, 494
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 2 cut(s) 225, 811
Fsp4HI GCNGC 2 cut(s) 30, 494
FspBI CTAG 1 cut(s) 884
GlaI GCGC 1 cut(s) 649
GluI GCNGC 2 cut(s) 30, 494
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 3 cut(s) 123, 735, 809
HhaI GCGC 1 cut(s) 650
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 648
HinP1I GCGC 1 cut(s) 648
HincII GTYRAC 3 cut(s) 301, 320, 582
HindII GTYRAC 3 cut(s) 301, 320, 582
HinfI GANTC 4 cut(s) 158, 212, 232, 281
HpaI GTTAAC 1 cut(s) 301
HphI GGTGA 4 cut(s) 33, 283, 553, 599
Hpy166II GTNNAC 4 cut(s) 301, 320, 391, 582
Hpy188I TCNGA 2 cut(s) 211, 517
Hpy188III TCNNGA 1 cut(s) 216
Hpy8I GTNNAC 4 cut(s) 301, 320, 391, 582
Hpy99I CGWCG 2 cut(s) 314, 317
HpyAV CCTTC 2 cut(s) 634, 835
HpyCH4III ACNGT 2 cut(s) 344, 547
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 29, 414, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 607
HpyF3I CTNAG 5 cut(s) 208, 230, 330, 395, 483
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 648
KpnI GGTACC 1 cut(s) 462
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 169
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 3 cut(s) 366, 562, 769
Lsp1109I GCAGC 2 cut(s) 41, 505
MaeI CTAG 1 cut(s) 884
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 182, 541, 787
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 4 cut(s) 26, 167, 565, 757
MfeI CAATTG 2 cut(s) 109, 202
MhlI GDGCHC 2 cut(s) 225, 811
MluCI AATT 5 cut(s) 94, 109, 150, 202, 466
MlyI GAGTC 3 cut(s) 152, 221, 241
MnlI CCTC 4 cut(s) 32, 441, 478, 520
MseI TTAA 4 cut(s) 300, 624, 777, 794
MslI CAYNNNNRTG 1 cut(s) 849
MspR9I CCNGG 3 cut(s) 189, 426, 812
MunI CAATTG 2 cut(s) 109, 202
MvaI CCWGG 3 cut(s) 189, 426, 812
MwoI GCNNNNNNNGC 1 cut(s) 607
NcoI CCATGG 1 cut(s) 61
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 460, 809
NmuCI GTSAC 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 281
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 31, 495
PleI GAGTC 3 cut(s) 152, 220, 240
PpsI GAGTC 3 cut(s) 152, 220, 240
Psp6I CCWGG 3 cut(s) 187, 424, 810
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 3 cut(s) 187, 424, 810
PspN4I GGNNCC 2 cut(s) 460, 809
PspOMI GGGCCC 1 cut(s) 807
PspPI GGNCC 5 cut(s) 122, 428, 630, 807, 808
PstNI CAGNNNCTG 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 4 cut(s) 20, 84, 460, 683
RsaNI GTAC 4 cut(s) 19, 83, 459, 682
RseI CAYNNNNRTG 1 cut(s) 849
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 4 cut(s) 300, 624, 777, 794
SatI GCNGC 2 cut(s) 30, 494
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 5 cut(s) 122, 428, 630, 807, 808
SchI GAGTC 3 cut(s) 152, 221, 241
ScrFI CCNGG 3 cut(s) 189, 426, 812
SduI GDGCHC 2 cut(s) 225, 811
SinI GGWCC 2 cut(s) 428, 630
SmiMI CAYNNNNRTG 1 cut(s) 849
Sse9I AATT 5 cut(s) 94, 109, 150, 202, 466
SsiI CCGC 1 cut(s) 165
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 3 cut(s) 187, 424, 810
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 344, 547
TaiI ACGT 1 cut(s) 312
TaqII GACCGA 1 cut(s) 305
TasI AATT 5 cut(s) 94, 109, 150, 202, 466
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 4 cut(s) 300, 624, 777, 794
Tru9I TTAA 4 cut(s) 300, 624, 777, 794
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 29, 493
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 3 cut(s) 566, 620, 857
TspRI CASTG 1 cut(s) 487
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 428, 630
XapI RAATTY 1 cut(s) 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XspI CTAG 1 cut(s) 884
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.