Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

18234146 .. 18240914

Gene Structure 6769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG104700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCATCTGCTTGTTTGTACCTCCTTGTAGCTGTTCTCTTACTCTTGTTCTTCAACTTCCATGGAAGCAATGCTAACTTTTCAGCCTCAAGAGATTGCCCCATATACAGTTGTGGTCATGAGCTTGATTTTTACTACCCTTTTTGGAAAATTGAAGACTCCACCGCCGATCAGTATTGTGGCTTCCCTGGTTTTGGTCTAAAATGCTCAGATTCTGGAGAGCCTATACTGACTCTATCAAATGATTCATTCGTTGTTAAAGACATAGACTTCACTGTATCCACCATCACCCTTGTTGACATTGATGTTGTTAATCAAACATGCCCTAGGGCAAGACACAGTATGAGTGTAGGCACGCTCCCATTGGATTACTCCCCATTGGATGTGAACCTGAGCTTCTACTTCAACTGCACTTCCGTTCCTGATCCTGTTGTGCCTCCCATTACCTGCTTGGGATTGTACGGTACCAAAAAGTCGTATGTTTTCACTGAGGGAGAGGAACCAGATGGGTTTGATTGGTCTGGAAATTGTGAGGAGAATGTGGTGGTGACTGTGATGGAGACTAAGGAGCTTACTACTAGTATTGATGAGTTGAGTGGTGCTTTTGGAGGGCTTATGAACCAGGGGTTTGGGCTTACCTGGACCATGACTAAGGAGTGCCGTTCGTGTGAGATTAATGGTGGGTTGTGTGGCTACAACAACACTGGGACAGAGTTCCTCTGCTTTTGCAAAGATGGTAGCACTGGTACCACAAGAAATGGCCTTTGCAGGAAAGGTGTTTTTGGTGCAGGAACTGCAATCTTATTCTTTGTTTCTGGCTTTGGCCTATGGAACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

279

Amino Acids

30.43

Weight (kDa)

4.38

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	33 - 100	7.8e-14	Wall-associated receptor kinase galacturonan-binding
WAK_assoc	PF14380	150 - 246	5.3e-21	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
Acc65I	GGTACC	2 cut(s)	464, 746
AccB1I	GGYRCC	2 cut(s)	464, 746
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	419
AfaI	GTAC	4 cut(s)	20, 461, 466, 748
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	55, 155, 406
AhlI	ACTAGT	1 cut(s)	578
AjnI	CCWGG	3 cut(s)	187, 621, 638
AluBI	AGCT	4 cut(s)	32, 124, 396, 571
AluI	AGCT	4 cut(s)	32, 124, 396, 571
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	2 cut(s)	215, 794
AoxI	GGCC	2 cut(s)	760, 823
AseI	ATTAAT	1 cut(s)	675
Asp718I	GGTACC	2 cut(s)	464, 746
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	642
AsuHPI	GGTGA	2 cut(s)	280, 559
AvaII	GGWCC	1 cut(s)	642
AvrII	CCTAGG	1 cut(s)	326
BanI	GGYRCC	2 cut(s)	464, 746
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
BbsI	GAAGAC	1 cut(s)	162
BccI	CCATC	4 cut(s)	293, 500, 550, 728
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	3 cut(s)	189, 623, 640
BciVI	GTATCC	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	554
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	2 cut(s)	327, 579
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	289
BlnI	CCTAGG	1 cut(s)	326
Bme1390I	CCNGG	3 cut(s)	189, 623, 640
Bme18I	GGWCC	1 cut(s)	642
BmgT120I	GGNCC	1 cut(s)	642
BmiI	GGNNCC	3 cut(s)	466, 501, 748
BmrFI	CCNGG	3 cut(s)	189, 623, 640
BmrI	ACTGGG	1 cut(s)	714
BmuI	ACTGGG	1 cut(s)	714
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	73
BsaJI	CCNNGG	4 cut(s)	61, 187, 326, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	709, 748
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	3 cut(s)	189, 623, 640
BseDI	CCNNGG	4 cut(s)	61, 187, 326, 622
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	3 cut(s)	222, 383, 480
BseNI	ACTGG	2 cut(s)	709, 748
BseRI	GAGGAG	1 cut(s)	548
BsgI	GTGCAG	2 cut(s)	394, 807
BshFI	GGCC	2 cut(s)	762, 825
BshNI	GGYRCC	2 cut(s)	464, 746
BslFI	GGGAC	1 cut(s)	721
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	762, 825
Bsp143I	GATC	2 cut(s)	169, 424
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	762, 825
BspCNI	CTCAG	3 cut(s)	221, 384, 481
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	3 cut(s)	466, 501, 748
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	2 cut(s)	464, 746
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	709, 748
BssECI	CCNNGG	4 cut(s)	61, 187, 326, 622
BssMI	GATC	2 cut(s)	169, 424
BssT1I	CCWWGG	2 cut(s)	61, 326
Bst2UI	CCWGG	3 cut(s)	189, 623, 640
Bst4CI	ACNGT	5 cut(s)	110, 277, 341, 464, 553
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	5 cut(s)	208, 392, 489, 564, 651
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	172, 427
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	2 cut(s)	169, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNI	CCWGG	3 cut(s)	189, 623, 640
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	3 cut(s)	187, 621, 638
BstV2I	GAAGAC	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	629
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	762, 825
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	4 cut(s)	273, 486, 702, 741
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	2 cut(s)	215, 794
CciI	TCATGA	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	642
Csp6I	GTAC	4 cut(s)	19, 460, 465, 747
CviAII	CATG	4 cut(s)	62, 119, 321, 646
CviQI	GTAC	4 cut(s)	19, 460, 465, 747
DdeI	CTNAG	5 cut(s)	208, 392, 489, 564, 651
DpnI	GATC	2 cut(s)	171, 426
DpnII	GATC	2 cut(s)	169, 424
Eco130I	CCWWGG	2 cut(s)	61, 326
Eco47I	GGWCC	1 cut(s)	642
EcoRII	CCWGG	3 cut(s)	187, 621, 638
EcoT14I	CCWWGG	2 cut(s)	61, 326
ErhI	CCWWGG	2 cut(s)	61, 326
FaeI	CATG	4 cut(s)	65, 122, 324, 649
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	4 cut(s)	61, 118, 320, 645
FokI	GGATG	1 cut(s)	395
FspBI	CTAG	2 cut(s)	327, 579
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	762, 825
Hin1II	CATG	4 cut(s)	65, 122, 324, 649
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	4 cut(s)	158, 212, 232, 245
HphI	GGTGA	2 cut(s)	280, 559
Hpy166II	GTNNAC	2 cut(s)	298, 388
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	6 cut(s)	90, 119, 216, 422, 522, 837
Hpy8I	GTNNAC	2 cut(s)	298, 388
HpyCH4III	ACNGT	5 cut(s)	110, 277, 341, 464, 553
HpyCH4V	TGCA	5 cut(s)	411, 729, 768, 788, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	5 cut(s)	208, 392, 489, 564, 651
Hsp92II	CATG	4 cut(s)	65, 122, 324, 649
KpnI	GGTACC	2 cut(s)	468, 750
Kzo9I	GATC	2 cut(s)	169, 424
LmnI	GCTCC	2 cut(s)	363, 568
MaeI	CTAG	2 cut(s)	327, 579
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	171, 426
MboI	GATC	2 cut(s)	169, 424
MboII	GAAGA	2 cut(s)	43, 167
MluCI	AATT	2 cut(s)	150, 526
MlyI	GAGTC	2 cut(s)	152, 226
MnlI	CCTC	8 cut(s)	32, 97, 447, 484, 490, 526, 602, 728
MseI	TTAA	3 cut(s)	258, 312, 675
MspR9I	CCNGG	3 cut(s)	189, 623, 640
MvaI	CCWGG	3 cut(s)	189, 623, 640
MwoI	GCNNNNNNNGC	1 cut(s)	794
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	169, 424
NlaIII	CATG	4 cut(s)	65, 122, 324, 649
NlaIV	GGNNCC	3 cut(s)	466, 501, 748
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	1 cut(s)	324
PagI	TCATGA	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	212, 245
PleI	GAGTC	2 cut(s)	152, 226
PpsI	GAGTC	2 cut(s)	152, 226
PshBI	ATTAAT	1 cut(s)	675
Psp6I	CCWGG	3 cut(s)	187, 621, 638
PspGI	CCWGG	3 cut(s)	187, 621, 638
PspN4I	GGNNCC	3 cut(s)	466, 501, 748
PspPI	GGNCC	1 cut(s)	642
PstNI	CAGNNNCTG	2 cut(s)	215, 794
RsaI	GTAC	4 cut(s)	20, 461, 466, 748
RsaNI	GTAC	4 cut(s)	19, 460, 465, 747
SaqAI	TTAA	3 cut(s)	258, 312, 675
Sau3AI	GATC	2 cut(s)	169, 424
Sau96I	GGNCC	1 cut(s)	642
SchI	GAGTC	2 cut(s)	152, 226
ScrFI	CCNGG	3 cut(s)	189, 623, 640
SetI	ASST	9 cut(s)	24, 34, 126, 393, 398, 449, 573, 641, 778
SinI	GGWCC	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	2 cut(s)	150, 526
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	327, 579
StyD4I	CCNGG	3 cut(s)	187, 621, 638
StyI	CCWWGG	2 cut(s)	61, 326
TaaI	ACNGT	5 cut(s)	110, 277, 341, 464, 553
TasI	AATT	2 cut(s)	150, 526
TfiI	GAWTC	2 cut(s)	212, 245
Tru1I	TTAA	3 cut(s)	258, 312, 675
Tru9I	TTAA	3 cut(s)	258, 312, 675
TscAI	CASTG	4 cut(s)	280, 493, 709, 748
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	237, 632
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	4 cut(s)	280, 493, 709, 748
VpaK11BI	GGWCC	1 cut(s)	642
VspI	ATTAAT	1 cut(s)	675
XceI	RCATGY	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmaJI	CCTAGG	1 cut(s)	326
XspI	CTAG	2 cut(s)	327, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.