Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005665.1

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

126645 .. 127540

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005665.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtcatctactcgtttgtacctccttgcagctgttctcttactcttgttcttcaacttccatggaagcaatgctaatgctagcttttcagcctcaacaaattgccccatgtacacttgtggtaatgaggtttattttcactaccctttttggaaaatcgaagactccacagcccatcaacattgtggataccctgcatggcctagggcaagacacaatattagtttgggcacgctcccattggattactccccactggatgtgaacctgagcttctacttcaactgcactttagatgctgatcatgttgtgcctcctataacctgtttgggaatatatggtaccaaaaagtcttacgttttcacggagggagaggaaccagatgggtttgattggtctgaaagttgtgaggagaatgtggtggtgactgtgaaagaaacagagattactagtagtattgatgagttgattggttcatttggagtggccatgaacaatgggtttgtgcttaactggaccgtggctaaggagtgcggttcctgtgaggttaatggtggcctgtgtggctacaacaaccttactgtgccagagtttctgtgcttttgcagagatgatagtattggtaccagaagcaatggcctctgcaagaaattaggtatgtttgtcgatgatgctctctctttatctaattataaagctatggatctcttattgaatggatgcaaaacaagtaaatgctatatacctgctacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

251

Amino Acids

27.73

Weight (kDa)

4.8

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc65I	GGTACC	2 cut(s)	341, 623
AccB1I	GGYRCC	2 cut(s)	341, 623
AciI	CCGC	1 cut(s)	534
AclWI	GGATC	1 cut(s)	711
AcoI	YGGCCR	1 cut(s)	486
AfaI	GTAC	4 cut(s)	20, 113, 343, 625
AgsI	TTSAA	3 cut(s)	55, 283, 715
AhlI	ACTAGT	1 cut(s)	449
AluBI	AGCT	4 cut(s)	32, 84, 273, 698
AluI	AGCT	4 cut(s)	32, 84, 273, 698
AlwI	GGATC	1 cut(s)	711
AoxI	GGCC	4 cut(s)	200, 486, 556, 637
ApeKI	GCWGC	1 cut(s)	29
Asp718I	GGTACC	2 cut(s)	341, 623
AspA2I	CCTAGG	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	436
AsuNHI	GCTAGC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	516
AvrII	CCTAGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	488
BanI	GGYRCC	2 cut(s)	341, 623
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	183, 377
BciVI	GTATCC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	3 cut(s)	81, 204, 450
BfuI	GTATCC	1 cut(s)	182
BglI	GCCNNNNNGGC	1 cut(s)	564
BisI	GCNGC	1 cut(s)	30
BlnI	CCTAGG	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	516
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	4 cut(s)	343, 378, 538, 625
BmsI	GCATC	3 cut(s)	286, 661, 710
BmtI	GCTAGC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	168
Bpu10I	CCTNAGC	2 cut(s)	269, 525
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	61, 203, 519
Bse1I	ACTGG	2 cut(s)	261, 518
Bse3DI	GCAATG	2 cut(s)	76, 640
Bse8I	GATNNNNATC	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	61, 203, 519
BseGI	GGATG	2 cut(s)	265, 725
BseJI	GATNNNNATC	1 cut(s)	300
BseMI	GCAATG	2 cut(s)	76, 640
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	261, 518
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	4 cut(s)	202, 488, 558, 639
BshNI	GGYRCC	2 cut(s)	341, 623
BsnI	GGCC	4 cut(s)	202, 488, 558, 639
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	301, 703
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	1 cut(s)	534
BspANI	GGCC	4 cut(s)	202, 488, 558, 639
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	4 cut(s)	343, 378, 538, 625
BspOI	GCTAGC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	711
BspT107I	GGYRCC	2 cut(s)	341, 623
BsrDI	GCAATG	2 cut(s)	76, 640
BsrGI	TGTACA	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	261, 518
BssECI	CCNNGG	3 cut(s)	61, 203, 519
BssMI	GATC	2 cut(s)	301, 703
BssT1I	CCWWGG	2 cut(s)	61, 203
Bst4CI	ACNGT	3 cut(s)	430, 520, 583
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	82, 233
BstDEI	CTNAG	2 cut(s)	269, 525
BstDSI	CCRYGG	2 cut(s)	61, 519
BstF5I	GGATG	2 cut(s)	265, 725
BstKTI	GATC	2 cut(s)	304, 706
BstMBI	GATC	2 cut(s)	301, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuI	GTATCC	1 cut(s)	182
BsuRI	GGCC	4 cut(s)	202, 488, 558, 639
BtgI	CCRYGG	2 cut(s)	61, 519
BtsCI	GGATG	2 cut(s)	265, 725
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	82, 233
Cfr13I	GGNCC	1 cut(s)	516
Csp6I	GTAC	4 cut(s)	19, 112, 342, 624
CviAII	CATG	5 cut(s)	62, 109, 198, 305, 490
CviQI	GTAC	4 cut(s)	19, 112, 342, 624
DdeI	CTNAG	2 cut(s)	269, 525
DpnI	GATC	2 cut(s)	303, 705
DpnII	GATC	2 cut(s)	301, 703
EaeI	YGGCCR	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	61, 203
Eco47I	GGWCC	1 cut(s)	516
EcoT14I	CCWWGG	2 cut(s)	61, 203
ErhI	CCWWGG	2 cut(s)	61, 203
FaeI	CATG	5 cut(s)	65, 112, 201, 308, 493
FatI	CATG	5 cut(s)	61, 108, 197, 304, 489
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	272, 732
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	3 cut(s)	81, 204, 450
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	4 cut(s)	202, 488, 558, 639
Hin1II	CATG	5 cut(s)	65, 112, 201, 308, 493
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	114, 265
Hpy188I	TCNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	114, 265
HpyCH4III	ACNGT	3 cut(s)	430, 520, 583
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	6 cut(s)	29, 197, 288, 606, 645, 723
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	2 cut(s)	269, 525
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	65, 112, 201, 308, 493
KpnI	GGTACC	2 cut(s)	345, 627
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	301, 703
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	3 cut(s)	286, 661, 710
MaeI	CTAG	3 cut(s)	81, 204, 450
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	303, 705
MboI	GATC	2 cut(s)	301, 703
MboII	GAAGA	2 cut(s)	43, 173
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	3 cut(s)	100, 650, 688
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	9 cut(s)	32, 103, 121, 324, 361, 367, 403, 538, 650
Mox20I	TGGCCA	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	2 cut(s)	510, 549
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	564
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	301, 703
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	5 cut(s)	65, 112, 201, 308, 493
NlaIV	GGNNCC	4 cut(s)	343, 378, 538, 625
NmuCI	GTSAC	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PsiI	TTATAA	1 cut(s)	693
PspN4I	GGNNCC	4 cut(s)	343, 378, 538, 625
PspPI	GGNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	4 cut(s)	20, 113, 343, 625
RsaNI	GTAC	4 cut(s)	19, 112, 342, 624
SaqAI	TTAA	2 cut(s)	510, 549
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	301, 703
Sau96I	GGNCC	1 cut(s)	516
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	3 cut(s)	286, 661, 710
SinI	GGWCC	1 cut(s)	516
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	3 cut(s)	100, 650, 688
SsiI	CCGC	1 cut(s)	534
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	3 cut(s)	81, 204, 450
StyI	CCWWGG	2 cut(s)	61, 203
TaaI	ACNGT	3 cut(s)	430, 520, 583
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	159, 666
TasI	AATT	3 cut(s)	100, 650, 688
TatI	WGTACW	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	510, 549
Tru9I	TTAA	2 cut(s)	510, 549
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	465, 506
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmaJI	CCTAGG	1 cut(s)	203
XspI	CTAG	3 cut(s)	81, 204, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.