Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8007212.1

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 455

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8007212.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

tgagcttctacttcaactgcacttcctttcctgatcctgttgtgcctcccataacctgcttgggatcgtacggtaccaagaagtcttatgtttttactaaggaagaggaaccagatgggtttgattggtctggaaattgtgaggagaatgtggtggtgactgtgatggagactaaggagcttactactagtattgatgagttgagtggtgcttttggagggcttatgaaccaggggtttgggcttacctggaccatggctaaggagtgcctttcgtgtgagattaatggtgggttgtgtggctacaacaacactgggacagagttcctctgcttttgcaaagatggtagcactggtaccacaagaaatggcctttgcaggaaaggtatgtttctcgatgatgctttcttttatgtaattttaaagctatggatctgtttgagccaacagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

150

Amino Acids

16.59

Weight (kDa)

4.51

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
Acc65I	GGTACC	2 cut(s)	73, 355
AccB1I	GGYRCC	2 cut(s)	73, 355
AclWI	GGATC	3 cut(s)	28, 72, 439
AfaI	GTAC	3 cut(s)	70, 75, 357
AgsI	TTSAA	1 cut(s)	15
AhlI	ACTAGT	1 cut(s)	187
AjnI	CCWGG	2 cut(s)	230, 247
AluBI	AGCT	3 cut(s)	5, 180, 426
AluI	AGCT	3 cut(s)	5, 180, 426
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	3 cut(s)	28, 72, 439
AoxI	GGCC	1 cut(s)	369
AseI	ATTAAT	1 cut(s)	284
Asp718I	GGTACC	2 cut(s)	73, 355
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	2 cut(s)	73, 355
BccI	CCATC	3 cut(s)	109, 159, 337
BciT130I	CCWGG	2 cut(s)	232, 249
BcoDI	GTCTC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	232, 249
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	75, 110, 357
BmrFI	CCNGG	2 cut(s)	232, 249
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	231, 254
Bse1I	ACTGG	2 cut(s)	318, 357
BseBI	CCWGG	2 cut(s)	232, 249
BseDI	CCNNGG	2 cut(s)	231, 254
BseNI	ACTGG	2 cut(s)	318, 357
BseRI	GAGGAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	2 cut(s)	73, 355
BsiWI	CGTACG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	33, 64, 431
Bsp19I	CCATGG	1 cut(s)	254
BspANI	GGCC	1 cut(s)	371
BspLI	GGNNCC	3 cut(s)	75, 110, 357
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	3 cut(s)	28, 72, 439
BspT107I	GGYRCC	2 cut(s)	73, 355
BsrI	ACTGG	2 cut(s)	318, 357
BssECI	CCNNGG	2 cut(s)	231, 254
BssMI	GATC	3 cut(s)	33, 64, 431
BssT1I	CCWWGG	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	232, 249
Bst4CI	ACNGT	2 cut(s)	73, 162
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	98, 173, 260
BstDSI	CCRYGG	1 cut(s)	254
BstKTI	GATC	3 cut(s)	36, 67, 434
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	3 cut(s)	33, 64, 431
BstNI	CCWGG	2 cut(s)	232, 249
BstSCI	CCNGG	2 cut(s)	230, 247
BstX2I	RGATCY	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	1 cut(s)	254
BtsIMutI	CAGTG	2 cut(s)	311, 350
BveI	ACCTGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	69, 74, 356
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	9 cut(s)	5, 180, 222, 243, 259, 302, 371, 426, 443
CviKI_1	RGCY	9 cut(s)	5, 180, 222, 243, 259, 302, 371, 426, 443
CviQI	GTAC	3 cut(s)	69, 74, 356
DdeI	CTNAG	3 cut(s)	98, 173, 260
DpnI	GATC	3 cut(s)	35, 66, 433
DpnII	GATC	3 cut(s)	33, 64, 431
DraI	TTTAAA	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	230, 247
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	1 cut(s)	258
FaiI	YATR	7 cut(s)	52, 89, 226, 256, 388, 413, 429
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	1 cut(s)	254
FspBI	CTAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	31, 131, 394
HpyCH4III	ACNGT	2 cut(s)	73, 162
HpyCH4V	TGCA	3 cut(s)	20, 338, 377
HpyF3I	CTNAG	3 cut(s)	98, 173, 260
Hsp92II	CATG	1 cut(s)	258
KpnI	GGTACC	2 cut(s)	77, 359
Kzo9I	GATC	3 cut(s)	33, 64, 431
LmnI	GCTCC	1 cut(s)	177
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	3 cut(s)	35, 66, 433
MboI	GATC	3 cut(s)	33, 64, 431
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	2 cut(s)	135, 416
MnlI	CCTC	5 cut(s)	56, 99, 135, 211, 337
MseI	TTAA	2 cut(s)	284, 421
MspR9I	CCNGG	2 cut(s)	232, 249
MvaI	CCWGG	2 cut(s)	232, 249
NcoI	CCATGG	1 cut(s)	254
NdeII	GATC	3 cut(s)	33, 64, 431
NlaIII	CATG	1 cut(s)	258
NlaIV	GGNNCC	3 cut(s)	75, 110, 357
NmuCI	GTSAC	1 cut(s)	156
Pfl23II	CGTACG	1 cut(s)	68
PshBI	ATTAAT	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	230, 247
PspGI	CCWGG	2 cut(s)	230, 247
PspLI	CGTACG	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	75, 110, 357
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	3 cut(s)	70, 75, 357
RsaNI	GTAC	3 cut(s)	69, 74, 356
SaqAI	TTAA	2 cut(s)	284, 421
Sau3AI	GATC	3 cut(s)	33, 64, 431
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	232, 249
SetI	ASST	6 cut(s)	7, 58, 182, 250, 387, 428
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	2 cut(s)	135, 416
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	230, 247
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	73, 162
TaqI	TCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	135, 416
Tru1I	TTAA	2 cut(s)	284, 421
Tru9I	TTAA	2 cut(s)	284, 421
TscAI	CASTG	2 cut(s)	318, 357
TseFI	GTSAC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	318, 357
VpaK11BI	GGWCC	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.