Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

57178261 .. 57181500

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGATAGAGGAGGGCATTGATGCGATATATACAAGTAACCAAAAAGCTGGGAGATCCCGTGAACTCCTCCTTGTCTACGAATATGTTCCCAATGGAACTCTTGCTGATCATCTTCACGGTGGAAAAGCAAAACCCGGTGCACTGCCATGGCATACTCGAATCAACATTGCCGTAGAAACTGCAAGTGCATTGTCCTATCTTCATGCGTACGAGATCATCCACCGTGACGTGAAAACCACTAACATTCTTCTTGACAACAATTTCTGTGTCAAAGTAGCAGATTTTGGACTATCTCGTCTCTTCCCCACGGATGTGACCCATGTATCAACTGCTCCACAAGGAACTCCGGGTTATGTTGATCCCGATTATAACCAATGCTACCAGCTTACTATATATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0036211 GO:0042221 GO:0042631 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

135

Amino Acids

15.08

Weight (kDa)

5.61

Isoelectric Point (pI)

24.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 123	2.6e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 106	2.2e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AasI	GACNNNNNNGTC	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	51, 356
AfaI	GTAC	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	50, 388
AluI	AGCT	2 cut(s)	50, 388
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	305
Alw44I	GTGCAC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	51, 356
ApaLI	GTGCAC	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	87
AsuC2I	CCSGG	2 cut(s)	138, 351
BaeGI	GKGCMC	1 cut(s)	145
BaeI	ACNNNNGTAYC	2 cut(s)	309, 342
Bbv12I	GWGCWC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	138, 351
BcoDI	GTCTC	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	138, 351
BmgBI	CACGTC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	138, 351
BmsI	GCATC	1 cut(s)	13
BpuMI	CCSGG	2 cut(s)	138, 351
BsaJI	CCNNGG	2 cut(s)	149, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	149, 309
BseGI	GGATG	2 cut(s)	219, 319
BseMI	GCAATG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	26, 59
BseSI	GKGCMC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	138, 350
BsiWI	CGTACG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	305
BsmBI	CGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	56, 109, 216, 361
Bsp19I	CCATGG	1 cut(s)	149
BspPI	GGATC	2 cut(s)	51, 356
BsrDI	GCAATG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	149, 309
BssMI	GATC	4 cut(s)	56, 109, 216, 361
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	122, 227
Bst6I	CTCTTC	2 cut(s)	308, 396
BstDSI	CCRYGG	2 cut(s)	149, 309
BstF5I	GGATG	2 cut(s)	219, 319
BstKTI	GATC	4 cut(s)	59, 112, 219, 364
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	4 cut(s)	56, 109, 216, 361
BstSCI	CCNGG	2 cut(s)	136, 349
BstSLI	GKGCMC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	56
BtgI	CCRYGG	2 cut(s)	149, 309
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	219, 319
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	150, 206, 323
CviJI	RGCY	2 cut(s)	50, 388
CviKI_1	RGCY	2 cut(s)	50, 388
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	4 cut(s)	58, 111, 218, 363
DpnII	GATC	4 cut(s)	56, 109, 216, 361
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	308, 396
EarI	CTCTTC	2 cut(s)	308, 396
Eco130I	CCWWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	3 cut(s)	153, 209, 326
FatI	CATG	3 cut(s)	149, 205, 322
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	78
FokI	GGATG	2 cut(s)	206, 326
GsaI	CCCAGC	1 cut(s)	54
HapII	CCGG	2 cut(s)	138, 350
Hin1II	CATG	3 cut(s)	153, 209, 326
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	2 cut(s)	138, 350
Hpy166II	GTNNAC	3 cut(s)	65, 79, 143
Hpy188III	TCNNGA	2 cut(s)	254, 365
Hpy8I	GTNNAC	3 cut(s)	65, 79, 143
HpyCH4III	ACNGT	2 cut(s)	122, 227
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	143, 185, 191
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	153, 209, 326
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	56, 109, 216, 361
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	4 cut(s)	36, 151, 363, 398
LweI	GCATC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	38, 227, 316
MalI	GATC	4 cut(s)	58, 111, 218, 363
MboI	GATC	4 cut(s)	56, 109, 216, 361
MboII	GAAGA	5 cut(s)	16, 107, 194, 242, 295
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	3 cut(s)	4, 7, 80
MroXI	GAANNNNTTC	1 cut(s)	87
MslI	CAYNNNNRTG	2 cut(s)	148, 314
MspI	CCGG	2 cut(s)	138, 350
MspR9I	CCNGG	2 cut(s)	138, 351
NciI	CCSGG	2 cut(s)	138, 351
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	4 cut(s)	56, 109, 216, 361
NlaIII	CATG	3 cut(s)	153, 209, 326
NmuCI	GTSAC	2 cut(s)	227, 316
OliI	CACNNNNGTG	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	162
Pfl23II	CGTACG	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	50
PspLI	CGTACG	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	148, 314
Sau3AI	GATC	4 cut(s)	56, 109, 216, 361
ScrFI	CCNGG	2 cut(s)	138, 351
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	3 cut(s)	52, 234, 390
SfaNI	GCATC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	148, 314
Sse9I	AATT	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	136, 349
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	122, 227
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	162
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	2 cut(s)	227, 316
Tsp45I	GTSAC	2 cut(s)	227, 316
TspDTI	ATGAA	2 cut(s)	17, 194
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	150
VneI	GTGCAC	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.