Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Forward (+)

9257502 .. 9261600

Gene Structure 4099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0117900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGGAGTCTTCTGCAACCACCATGGCCTTGAGAGCCACCTCTTCTTCTTCCTCCTCTTCATCCTCCTCCTCCTTCTTCTCCATTCCCCCAACCCAAAAGCCCCAGTCTTTGCCTTTCAAGCTCCAACCTTTTCGCTTTAAGAGGCACCAATCCCTAAAATGCATCCAATCCCCACCGTCCGATCCCAACCCGCTCTCACAGTCCACCCCCCTCAAAAACCCTACCTTCTCCTGCTCCGCCGCCACCCTCTCCCCCTCTCCCACCGCCGACCTCGCTCCCTCCAAGCTCCACCGCCTCGTCTCCGAGTTCCAGTCCCTCACGGAGCCCATCGACCGTGTCAAGCGGCTGCTGCACTACGCCAGCCTCCTCCCGCCGCTCCCCGATTCGGGTCGGGTCGACGCCAACCGGGTCATGGGCTGCACGGCCCAGGTCTGGCTGGAGGCGAAGATGGACCAGGACGGCAAGATGAGGTTCGCGGCGGACAGCGATTCCGAGATCACCAGAGGGTTCTGCTCGTGTTTGGTGTCCGTTCTCGACGGGGCGGCGCCGGAGGAGGTCTTGGCCGTCAAGACCGACGACCTGGCGGCGCTCAATGTTGGGTTGCCCGGTGCGCAGAGGTCTAGGGTTAATACGTGGCATAATGTGTTGGTCAGTATGCACAAAAAGACTAGAGCTTTAATGGCTGAGCTACAGGGGAAGCCGCCGTTCGAGCGCTTCCCGTCTCTGGTCATCACCGCCGATGGGATTCAGGCCAAGGGTAGCTACGCCGAAGCCCAGGCAAGGTATTTGTTTCCGGATGAGGCTAAGGTTGAGGAACTTGTTAATGTGTTGAAAGAAAAGAAGATTGGGGTTGCTGCTCATTTTTACATGGATCCTGAGGTTCAGGGTATTTTGACTGCAGCAAAGAAGCATTGGCCTCACATTCACATTTCGGATTCGTTGGTCATGGCGGATTCGGCTGTCAAGATGGCGAAAGATGGATGCGAGTTTATTACAGTTTTGGGTGTTGATTTTATGTCTGAAAATGTCAGGGCGATCCTTGATCAGGCCGGCTTTCAAAAGGTCGGTGTTTACAGGATGTCAAATGAACGAATTGGTTGTTCTTTGGCAGATGCTGCATCTTCCCCTTCTTATATGAGTTATCTTGAGAATGCTTCAAGGTCACCTCAGTCATTGCATGTTGTCTACATTAATACATCACTGGAAACAAAAGCTTATGCACATGAGCTTGTGCCAACAATTACCTGTACTTCTTCAAATGTTGTCCAAACCGTTCTGCAGGCTTTTTCTCAAGTGCCAGATTTAAACGTATGGTACGGTCCTGACTCTTACATGGGTGCAAATATTAGAGTATTACTTGAGCAGATGACAAAGATGACAGATGAAGAAATTGCTGAGATACATCCAGCACACAATAGAGACTCAATCAGATCTCTGCTACCTCGCCTGCATCATTATCAGGATGGGACATGCATGGTGCATCATTTGTTTGGAAATGAGGTTGTGAACAGGATAAATGAAATGTATTGTGATGCATTTATAACTGCTCATTTAGAGGTCCCTGGAGAAATGTTTGCTCTGGCAATGGAAGCAAAGAGGAGAGGAATGGGAGTTGTGGGGTCTACCCAAAACATTCTAGATTTCATAAAACAGAGGGTTCAAGAGGCTTTAGATAGAAATGTCAATGACCACCTTCAGTTTGTATTAGGAACAGAATCTGGAATGGTGACTTCAATTGTTGCACTAGTTCGCAGTTTGTTAGGTTCTGCAAAGTCAGGGGGAGCAAAGATCAATGTTGAAATTGTATTTCCAGTTTCATCAGACTCGATGACAAGCACATCATCCAATTCTTCTTCAGGCCTTAACCCTATTAAGGTGGGTGATGTCATACTACCTGTTATACCTGGAGTGGCTAGTGGGGAGGGGTGTTCAATTCATGGTGGGTGTGCATCCTGTCCGTACATGAAGATGAATTCTCTCAGCTCCCTCCTGAAGGTTTGCTACCACCTACCTGATGAGACTGACAACGCCATTTCTGCATATGAAGCTGCGCGATTCAAGTTGCAAACTCCCAATGGAAGATCAGTTGCGGATGTTGGGTGTGAACCAATTCTGCACATGAGGCACTTCCAGGCCTCTAAAAAACTTCCAGAGAAGCTTGTTTTCCAGATCTGTAATCCATCCAGTAATGGAAAGTCGTTGTCAATAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010228 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0031668 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0036211 GO:0042221 GO:0042631 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071462 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

737

Amino Acids

80.25

Weight (kDa)

6.65

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	101 - 221	4e-30	Fe-S metabolism associated domain
NadA	PF02445	273 - 579	1.4e-30	Quinolinate synthetase A protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1541
Acc16I	TGCGCA	1 cut(s)	612
AccB1I	GGYRCC	2 cut(s)	144, 544
AccBSI	CCGCTC	2 cut(s)	193, 376
AccI	GTMKAC	3 cut(s)	396, 1185, 1622
AccII	CGCG	2 cut(s)	476, 2053
AccIII	TCCGGA	1 cut(s)	793
AclWI	GGATC	4 cut(s)	176, 866, 879, 1030
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	1972
AcuI	CTGAAG	3 cut(s)	1679, 1839, 2012
AcyI	GRCGYC	2 cut(s)	399, 545
AfaI	GTAC	3 cut(s)	1249, 1316, 1961
AfeI	AGCGCT	1 cut(s)	713
AhlI	ACTAGT	1 cut(s)	1744
AjnI	CCWGG	7 cut(s)	426, 453, 579, 774, 1561, 1903, 2130
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
Alw26I	GTCTC	4 cut(s)	304, 726, 1413, 2012
AlwI	GGATC	4 cut(s)	176, 866, 879, 1030
AlwNI	CAGNNNCTG	2 cut(s)	1115, 1718
Aor13HI	TCCGGA	1 cut(s)	793
Aor51HI	AGCGCT	1 cut(s)	713
AoxI	GGCC	8 cut(s)	24, 423, 561, 750, 914, 1047, 1858, 2133
ApeKI	GCWGC	7 cut(s)	346, 349, 417, 854, 899, 1115, 2048
ApoI	RAATTY	1 cut(s)	1972
AseI	ATTAAT	1 cut(s)	1191
Asp700I	GAANNNNTTC	1 cut(s)	2109
AspLEI	GCGC	5 cut(s)	547, 589, 613, 714, 2053
AspS9I	GGNCC	4 cut(s)	424, 451, 1319, 1558
AsuC2I	CCSGG	2 cut(s)	407, 606
AsuHPI	GGTGA	5 cut(s)	490, 724, 1155, 1738, 1892
AvaII	GGWCC	3 cut(s)	451, 1319, 1558
AxyI	CCTNAGG	1 cut(s)	876
BamHI	GGATCC	1 cut(s)	871
BanI	GGYRCC	2 cut(s)	144, 544
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	1985, 2017
BauI	CACGAG	1 cut(s)	514
BbvI	GCAGC	7 cut(s)	333, 336, 404, 841, 911, 1102, 2035
BccI	CCATC	7 cut(s)	335, 442, 734, 961, 971, 1457, 2188
BceAI	ACGGC	4 cut(s)	438, 475, 548, 688
BciT130I	CCWGG	7 cut(s)	428, 455, 581, 776, 1563, 1905, 2132
BclI	TGATCA	1 cut(s)	1042
BcnI	CCSGG	2 cut(s)	407, 606
BcoDI	GTCTC	4 cut(s)	304, 726, 1413, 2012
BcuI	ACTAGT	1 cut(s)	1744
BfaI	CTAG	5 cut(s)	621, 669, 1637, 1745, 1914
BfmI	CTRYAG	3 cut(s)	689, 897, 1277
BfoI	RGCGCY	3 cut(s)	548, 590, 715
BglII	AGATCT	2 cut(s)	1430, 2169
BlpI	GCTNAGC	1 cut(s)	684
Bme1390I	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
Bme18I	GGWCC	3 cut(s)	451, 1319, 1558
BmgT120I	GGNCC	4 cut(s)	424, 451, 1319, 1558
BmiI	GGNNCC	5 cut(s)	146, 324, 546, 873, 1560
BmrFI	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	8 cut(s)	171, 971, 1102, 1127, 1459, 1489, 1522, 1958
BmuI	ACTGGG	1 cut(s)	97
BpmI	CTGGAG	3 cut(s)	458, 1584, 1926
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	4 cut(s)	49, 1166, 1275, 1379
BpuMI	CCSGG	2 cut(s)	407, 606
BsaAI	YACGTR	1 cut(s)	633
BsaHI	GRCGYC	2 cut(s)	399, 545
BsaJI	CCNNGG	5 cut(s)	21, 426, 753, 774, 1561
BsaWI	WCCGGW	1 cut(s)	793
Bse118I	RCCGGY	1 cut(s)	1049
Bse1I	ACTGG	5 cut(s)	103, 310, 1206, 1811, 2184
Bse21I	CCTNAGG	1 cut(s)	876
Bse3DI	GCAATG	2 cut(s)	1172, 1590
BseAI	TCCGGA	1 cut(s)	793
BseBI	CCWGG	7 cut(s)	428, 455, 581, 776, 1563, 1905, 2132
BseDI	CCNNGG	5 cut(s)	21, 426, 753, 774, 1561
BseMI	GCAATG	2 cut(s)	1172, 1590
BseMII	CTCAG	5 cut(s)	675, 867, 1181, 1386, 1993
BseNI	ACTGG	5 cut(s)	103, 310, 1206, 1811, 2184
BseRI	GAGGAG	6 cut(s)	43, 55, 58, 356, 566, 1612
BseXI	GCAGC	7 cut(s)	333, 336, 404, 841, 911, 1102, 2035
BsgI	GTGCAG	3 cut(s)	335, 403, 2099
Bsh1236I	CGCG	2 cut(s)	476, 2053
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	8 cut(s)	26, 425, 563, 752, 916, 1049, 1860, 2135
BshNI	GGYRCC	2 cut(s)	144, 544
BsiEI	CGRYCG	1 cut(s)	334
BsiSI	CCGG	5 cut(s)	406, 548, 606, 794, 1050
BslFI	GGGAC	3 cut(s)	298, 1480, 1544
BsmAI	GTCTC	4 cut(s)	304, 726, 1413, 2012
BsmBI	CGTCTC	2 cut(s)	304, 726
BsmFI	GGGAC	3 cut(s)	298, 1480, 1544
BsmI	GAATGC	1 cut(s)	1156
BsnI	GGCC	8 cut(s)	26, 425, 563, 752, 916, 1049, 1860, 2135
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp13I	TCCGGA	1 cut(s)	793
Bsp143I	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
Bsp1720I	GCTNAGC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	8 cut(s)	26, 425, 563, 752, 916, 1049, 1860, 2135
BspCNI	CTCAG	5 cut(s)	676, 868, 1180, 1387, 1992
BspEI	TCCGGA	1 cut(s)	793
BspFNI	CGCG	2 cut(s)	476, 2053
BspLI	GGNNCC	5 cut(s)	146, 324, 546, 873, 1560
BspMAI	CTGCAG	2 cut(s)	901, 1281
BspPI	GGATC	4 cut(s)	176, 866, 879, 1030
BspT107I	GGYRCC	2 cut(s)	144, 544
BsrBI	CCGCTC	2 cut(s)	193, 376
BsrDI	GCAATG	2 cut(s)	1172, 1590
BsrFI	RCCGGY	1 cut(s)	1049
BsrI	ACTGG	5 cut(s)	103, 310, 1206, 1811, 2184
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	5 cut(s)	21, 426, 753, 774, 1561
BssMI	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
BssNI	GRCGYC	2 cut(s)	399, 545
BssSI	CACGAG	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	21, 753
Bst2BI	CACGAG	1 cut(s)	514
Bst2UI	CCWGG	7 cut(s)	428, 455, 581, 776, 1563, 1905, 2132
Bst4CI	ACNGT	6 cut(s)	177, 201, 335, 997, 1273, 1319
Bst6I	CTCTTC	2 cut(s)	46, 61
BstACI	GRCGYC	2 cut(s)	399, 545
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstBAI	YACGTR	1 cut(s)	633
BstC8I	GCNNGC	4 cut(s)	361, 1051, 1281, 1448
BstDEI	CTNAG	6 cut(s)	684, 804, 876, 1167, 1395, 1979
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	1161
BstENI	CCTNNNNNAGG	2 cut(s)	1043, 1991
BstFNI	CGCG	2 cut(s)	476, 2053
BstH2I	RGCGCY	3 cut(s)	548, 590, 715
BstHHI	GCGC	5 cut(s)	547, 589, 613, 714, 2053
BstKTI	GATC	9 cut(s)	184, 498, 874, 1038, 1045, 1433, 1791, 2084, 2172
BstMAI	GTCTC	4 cut(s)	304, 726, 1413, 2012
BstMBI	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
BstMCI	CGRYCG	1 cut(s)	334
BstNI	CCWGG	7 cut(s)	428, 455, 581, 776, 1563, 1905, 2132
BstNSI	RCATGY	2 cut(s)	1181, 1473
BstPI	GGTNACC	1 cut(s)	1161
BstSCI	CCNGG	9 cut(s)	405, 426, 453, 579, 604, 774, 1561, 1903, 2130
BstSFI	CTRYAG	3 cut(s)	689, 897, 1277
BstUI	CGCG	2 cut(s)	476, 2053
BstV1I	GCAGC	7 cut(s)	333, 336, 404, 841, 911, 1102, 2035
BstX2I	RGATCY	3 cut(s)	871, 1430, 2169
BstYI	RGATCY	3 cut(s)	871, 1430, 2169
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	8 cut(s)	26, 425, 563, 752, 916, 1049, 1860, 2135
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	1199
Cac8I	GCNNGC	4 cut(s)	361, 1051, 1281, 1448
CaiI	CAGNNNCTG	2 cut(s)	1115, 1718
CfoI	GCGC	5 cut(s)	547, 589, 613, 714, 2053
Cfr10I	RCCGGY	1 cut(s)	1049
Cfr13I	GGNCC	4 cut(s)	424, 451, 1319, 1558
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	1248, 1315, 1960
CviQI	GTAC	3 cut(s)	1248, 1315, 1960
DdeI	CTNAG	6 cut(s)	684, 804, 876, 1167, 1395, 1979
DinI	GGCGCC	1 cut(s)	546
DpnI	GATC	9 cut(s)	183, 497, 873, 1037, 1044, 1432, 1790, 2083, 2171
DpnII	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
DraI	TTTAAA	1 cut(s)	1305
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	46, 61
EarI	CTCTTC	2 cut(s)	46, 61
EciI	GGCGGA	3 cut(s)	226, 494, 965
Eco130I	CCWWGG	2 cut(s)	21, 753
Eco147I	AGGCCT	2 cut(s)	1860, 2135
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	451, 1319, 1558
Eco47III	AGCGCT	1 cut(s)	713
Eco57I	CTGAAG	3 cut(s)	1679, 1839, 2012
Eco81I	CCTNAGG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	1161
EcoNI	CCTNNNNNAGG	2 cut(s)	1043, 1991
EcoO109I	RGGNCCY	1 cut(s)	1558
EcoO65I	GGTNACC	1 cut(s)	1161
EcoRI	GAATTC	1 cut(s)	1972
EcoRII	CCWGG	7 cut(s)	426, 453, 579, 774, 1561, 1903, 2130
EcoT14I	CCWWGG	2 cut(s)	21, 753
EcoT22I	ATGCAT	3 cut(s)	164, 1475, 1537
EcoT38I	GRGCYC	1 cut(s)	327
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	21, 753
Esp3I	CGTCTC	2 cut(s)	304, 726
FaqI	GGGAC	3 cut(s)	298, 1480, 1544
FauI	CCCGC	2 cut(s)	198, 378
FauNDI	CATATG	1 cut(s)	2041
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	3 cut(s)	396, 1185, 1622
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	5 cut(s)	621, 669, 1637, 1745, 1914
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	5 cut(s)	546, 588, 612, 713, 2052
GsuI	CTGGAG	3 cut(s)	458, 1584, 1926
HaeII	RGCGCY	3 cut(s)	548, 590, 715
HaeIII	GGCC	8 cut(s)	26, 425, 563, 752, 916, 1049, 1860, 2135
HapII	CCGG	5 cut(s)	406, 548, 606, 794, 1050
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	5 cut(s)	547, 589, 613, 714, 2053
Hin1I	GRCGYC	2 cut(s)	399, 545
Hin6I	GCGC	5 cut(s)	545, 587, 611, 712, 2051
HinP1I	GCGC	5 cut(s)	545, 587, 611, 712, 2051
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	2 cut(s)	1212, 2156
HpaII	CCGG	5 cut(s)	406, 548, 606, 794, 1050
HphI	GGTGA	5 cut(s)	490, 724, 1155, 1738, 1892
Hpy166II	GTNNAC	7 cut(s)	204, 397, 1072, 1186, 1507, 1623, 2105
Hpy188I	TCNGA	7 cut(s)	181, 304, 493, 934, 1021, 1430, 1822
Hpy8I	GTNNAC	7 cut(s)	204, 397, 1072, 1186, 1507, 1623, 2105
Hpy99I	CGWCG	3 cut(s)	401, 539, 578
HpyAV	CCTTC	5 cut(s)	82, 235, 1137, 1703, 1987
HpyCH4III	ACNGT	6 cut(s)	177, 201, 335, 997, 1273, 1319
HpyCH4IV	ACGT	2 cut(s)	632, 1308
HpyF3I	CTNAG	6 cut(s)	684, 804, 876, 1167, 1395, 1979
HpySE526I	ACGT	2 cut(s)	632, 1308
Hsp92I	GRCGYC	2 cut(s)	399, 545
HspAI	GCGC	5 cut(s)	545, 587, 611, 712, 2051
KasI	GGCGCC	1 cut(s)	544
Kpn2I	TCCGGA	1 cut(s)	793
KroI	GCCGGC	1 cut(s)	1049
KroNI	GCCGGC	1 cut(s)	1051
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
LmnI	GCTCC	8 cut(s)	126, 239, 280, 291, 322, 381, 1781, 1988
Lsp1109I	GCAGC	7 cut(s)	333, 336, 404, 841, 911, 1102, 2035
LweI	GCATC	8 cut(s)	171, 971, 1102, 1127, 1459, 1489, 1522, 1958
MaeI	CTAG	5 cut(s)	621, 669, 1637, 1745, 1914
MaeII	ACGT	2 cut(s)	632, 1308
MaeIII	GTNAC	2 cut(s)	1161, 1726
MalI	GATC	9 cut(s)	183, 497, 873, 1037, 1044, 1432, 1790, 2083, 2171
MbiI	CCGCTC	2 cut(s)	193, 376
MboI	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
MfeI	CAATTG	1 cut(s)	1734
MflI	RGATCY	3 cut(s)	871, 1430, 2169
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	9 cut(s)	1092, 1239, 1389, 1734, 1800, 1846, 1932, 1972, 2109
Mly113I	GGCGCC	1 cut(s)	545
MlyI	GAGTC	4 cut(s)	14, 1319, 1415, 1817
MmeI	TCCRAC	1 cut(s)	148
Mph1103I	ATGCAT	3 cut(s)	164, 1475, 1537
MroI	TCCGGA	1 cut(s)	793
MroNI	GCCGGC	1 cut(s)	1049
MroXI	GAANNNNTTC	1 cut(s)	2109
MseI	TTAA	8 cut(s)	138, 627, 677, 822, 1191, 1304, 1863, 1872
MslI	CAYNNNNRTG	1 cut(s)	1967
MspI	CCGG	5 cut(s)	406, 548, 606, 794, 1050
MspR9I	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
MunI	CAATTG	1 cut(s)	1734
Mva1269I	GAATGC	1 cut(s)	1156
MvaI	CCWGG	7 cut(s)	428, 455, 581, 776, 1563, 1905, 2132
MvnI	CGCG	2 cut(s)	476, 2053
NaeI	GCCGGC	1 cut(s)	1051
NarI	GGCGCC	1 cut(s)	545
NciI	CCSGG	2 cut(s)	407, 606
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	2041
NdeII	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
NgoMIV	GCCGGC	1 cut(s)	1049
NlaIV	GGNNCC	5 cut(s)	146, 324, 546, 873, 1560
NmuCI	GTSAC	2 cut(s)	1161, 1726
NsbI	TGCGCA	1 cut(s)	612
NsiI	ATGCAT	3 cut(s)	164, 1475, 1537
NspI	RCATGY	2 cut(s)	1181, 1473
PceI	AGGCCT	2 cut(s)	1860, 2135
PctI	GAATGC	1 cut(s)	1156
PdiI	GCCGGC	1 cut(s)	1051
PdmI	GAANNNNTTC	1 cut(s)	2109
PfeI	GAWTC	7 cut(s)	383, 488, 745, 935, 953, 1715, 2055
PflFI	GACNNNGTC	1 cut(s)	335
PleI	GAGTC	4 cut(s)	13, 1319, 1415, 1817
PluTI	GGCGCC	1 cut(s)	548
PpsI	GAGTC	4 cut(s)	13, 1319, 1415, 1817
Ppu21I	YACGTR	1 cut(s)	633
PpuMI	RGGWCCY	1 cut(s)	1558
PshBI	ATTAAT	1 cut(s)	1191
PsiI	TTATAA	1 cut(s)	1541
Psp5II	RGGWCCY	1 cut(s)	1558
Psp6I	CCWGG	7 cut(s)	426, 453, 579, 774, 1561, 1903, 2130
PspEI	GGTNACC	1 cut(s)	1161
PspGI	CCWGG	7 cut(s)	426, 453, 579, 774, 1561, 1903, 2130
PspN4I	GGNNCC	5 cut(s)	146, 324, 546, 873, 1560
PspPI	GGNCC	4 cut(s)	424, 451, 1319, 1558
PspPPI	RGGWCCY	1 cut(s)	1558
PstI	CTGCAG	2 cut(s)	901, 1281
PstNI	CAGNNNCTG	2 cut(s)	1115, 1718
PsuI	RGATCY	3 cut(s)	871, 1430, 2169
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	3 cut(s)	1249, 1316, 1961
RsaNI	GTAC	3 cut(s)	1248, 1315, 1960
RseI	CAYNNNNRTG	1 cut(s)	1967
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	8 cut(s)	138, 627, 677, 822, 1191, 1304, 1863, 1872
Sau3AI	GATC	9 cut(s)	181, 495, 871, 1035, 1042, 1430, 1788, 2081, 2169
Sau96I	GGNCC	4 cut(s)	424, 451, 1319, 1558
SchI	GAGTC	4 cut(s)	14, 1319, 1415, 1817
ScrFI	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	8 cut(s)	171, 971, 1102, 1127, 1459, 1489, 1522, 1958
SfcI	CTRYAG	3 cut(s)	689, 897, 1277
SfoI	GGCGCC	1 cut(s)	546
SinI	GGWCC	3 cut(s)	451, 1319, 1558
SmiMI	CAYNNNNRTG	1 cut(s)	1967
SmlI	CTYRAG	4 cut(s)	28, 1145, 1290, 1358
SmoI	CTYRAG	4 cut(s)	28, 1145, 1290, 1358
SpeI	ACTAGT	1 cut(s)	1744
Sse9I	AATT	9 cut(s)	1092, 1239, 1389, 1734, 1800, 1846, 1932, 1972, 2109
SseBI	AGGCCT	2 cut(s)	1860, 2135
SspDI	GGCGCC	1 cut(s)	544
SspI	AATATT	1 cut(s)	1345
SspMI	CTAG	5 cut(s)	621, 669, 1637, 1745, 1914
StuI	AGGCCT	2 cut(s)	1860, 2135
StyD4I	CCNGG	9 cut(s)	405, 426, 453, 579, 604, 774, 1561, 1903, 2130
StyI	CCWWGG	2 cut(s)	21, 753
TaaI	ACNGT	6 cut(s)	177, 201, 335, 997, 1273, 1319
TaiI	ACGT	2 cut(s)	635, 1311
TaqI	TCGA	5 cut(s)	330, 396, 534, 708, 1826
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	9 cut(s)	1092, 1239, 1389, 1734, 1800, 1846, 1932, 1972, 2109
TatI	WGTACW	1 cut(s)	1247
TauI	GCSGC	7 cut(s)	242, 346, 376, 479, 545, 587, 703
TfiI	GAWTC	7 cut(s)	383, 488, 745, 935, 953, 1715, 2055
Tru1I	TTAA	8 cut(s)	138, 627, 677, 822, 1191, 1304, 1863, 1872
Tru9I	TTAA	8 cut(s)	138, 627, 677, 822, 1191, 1304, 1863, 1872
TscAI	CASTG	1 cut(s)	1206
TseFI	GTSAC	2 cut(s)	1161, 1726
TseI	GCWGC	7 cut(s)	346, 349, 417, 854, 899, 1115, 2048
Tsp45I	GTSAC	2 cut(s)	1161, 1726
TspGWI	ACGGA	3 cut(s)	335, 517, 1947
TspRI	CASTG	1 cut(s)	1206
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	3 cut(s)	451, 1319, 1558
VspI	ATTAAT	1 cut(s)	1191
XagI	CCTNNNNNAGG	2 cut(s)	1043, 1991
XapI	RAATTY	1 cut(s)	1972
XbaI	TCTAGA	1 cut(s)	1636
XceI	RCATGY	2 cut(s)	1181, 1473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	3 cut(s)	396, 1185, 1622
XmnI	GAANNNNTTC	1 cut(s)	2109
XspI	CTAG	5 cut(s)	621, 669, 1637, 1745, 1914
Zsp2I	ATGCAT	3 cut(s)	164, 1475, 1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.