Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000786

Physical Location & Seq

Genomic Coordinates Reverse (-)

61638699 .. 61639583

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCTGCTGGTTTGTACCCCCTTGTAGCTCTTCTCTTGCTCTTCTTCTTTAACTTCCATGGAAGCAAAGCCAACTTTTTGGCCTCAACAAATTGCCCCATATACAGATGTGATAATGAGCTCGATTTTCACTACCCTTTTTGGAAAATCGAAGACTCCACAGCCCATCAACATTGTGGATACCCTGCATGCCCTAGGGCAAGACACACTATGAGTGTAGGCACGCTCCCATTGGATTACTCCCCATTGGATGTGAACCTGAGCTTCTACTTCAACTGCACTTCCTTTCCTGATCCTGCTGTGCCTCCCATAACCTGCTTGGGATCGTACGGTACCAAAAAGTCTTATGTTATCACGGAGGGAGAGGAACCAGATGGGTTTGATTGGTCGGAATATTGTGCGGAGAATGTGGTGGTGACTGTGAAAAAAACAGAGGAGATTACTAGAAGTATTGGCGAGTTGATTGGTGCATTTGGATTGGCCATGAACAATGGGTTTGTGCTTAACTGGACCGTGGCTAAGGAGTGCAGTTCCTGTGAGGCTAATGGTGGGTTCTGTGGCTACAACAACACTGCGCCAGAGATTCTGTGCTTTTGCAAAGATGGTAGTATTGGTACCACAAGCAATGGCCTCTGCAAGAAAGGTATGTTTGTCGATGATGCTCTCTCTTTATCTAATCATAAAGCTATGGATTTGTTTGAGCTAACAGAATTGAATGGATACAAAACAAGTAAATGGTACATACTTGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

251

Amino Acids

27.73

Weight (kDa)

5.0

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WAK_assoc	PF14380	106 - 202	3.2e-20	Wall-associated receptor kinase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000786)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18390 AT1G18390
fragaria_vesca	FvH4_5g11760 FvH4_5g11760 FvH4_5g11790
malus_domestica	MD06G1218900.v1.1 MD06G1219200.v1.1 MD14G1228700.v1.1
prunus_persica	Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1 Prupe.5G223900_v2.0.a1
pyrus_communis	pycom06g19560 pycom06g19580 pycom14g19000
rosa_chinensis	RchiOBHm_Chr7g0185891 RchiOBHm_Chr7g0185941 RchiOBHm_Chr7g0185971 RchiOBHm_Chr7g0186001 RchiOBHm_Chr7g0186021 RchiOBHm_Chr7g0209991 RchiOBHm_Chr7g0210001
rosa_laevigata	RLG00000003071 RLG00000004872 RLG00000004873 RLG00000004875 RLG00000005413
rosa_multiflora	Rmu_co8007212.1_g000001 Rmu_co8076798.1_g000001 Rmu_sc0000194.1_g000013 Rmu_sc0000194.1_g000017 Rmu_sc0000194.1_g000019 Rmu_sc0004509.1_g000017 Rmu_sc0004509.1_g000018 Rmu_sc0005665.1_g000002 Rmu_sc0005665.1_g000004 Rmu_sc0005665.1_g000020 Rmu_sc0005665.1_g000023 Rmu_sc0005665.1_g000035
rosa_roxburghii	Rroxscaffold_1G00039510 Rroxscaffold_3G00248670 Rroxscaffold_3G00257880 Rroxscaffold_3G00268500 Rroxscaffold_3G00268510 Rroxscaffold_3G00268530 Rroxscaffold_3G00268580
rosa_rugosa	Rorug06G0471800 Rorug07G0117900
rosa_samantha	Rh1BG104700 Rh4CG290300 Rh7AG070300 Rh7AG070400 Rh7AG070600 Rh7AG251700 Rh7BG086300 Rh7BG086400 Rh7BG246300 Rh7CG077400 Rh7CG077800 Rh7CG078000 Rh7CG268500 Rh7DG077400 Rh7DG077600 Rh7DG077900 Rh7DG078000 Rh7DG258500
rosa_wichuraiana	Rw7G006440 Rw7G006470 Rw7G006480 Rw7G021370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	323
Acc65I	GGTACC	2 cut(s)	332, 614
AccB1I	GGYRCC	2 cut(s)	332, 614
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	2 cut(s)	287, 331
AcoI	YGGCCR	1 cut(s)	480
AfaI	GTAC	5 cut(s)	17, 329, 334, 616, 740
AgsI	TTSAA	2 cut(s)	274, 715
AluBI	AGCT	5 cut(s)	29, 121, 264, 686, 703
AluI	AGCT	5 cut(s)	29, 121, 264, 686, 703
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	287, 331
AlwNI	CAGNNNCTG	1 cut(s)	534
AoxI	GGCC	3 cut(s)	81, 480, 628
Asp718I	GGTACC	2 cut(s)	332, 614
AspA2I	CCTAGG	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	510
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	510
AvrII	CCTAGG	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	482
BanI	GGYRCC	2 cut(s)	332, 614
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	3 cut(s)	174, 368, 596
BciVI	GTATCC	2 cut(s)	173, 713
BfaI	CTAG	2 cut(s)	195, 444
BfuAI	ACCTGC	1 cut(s)	323
BfuI	GTATCC	2 cut(s)	173, 713
BlnI	CCTAGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	3 cut(s)	334, 369, 616
BmsI	GCATC	1 cut(s)	649
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	2 cut(s)	260, 519
BsaJI	CCNNGG	3 cut(s)	58, 194, 513
Bse1I	ACTGG	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	631
BseDI	CCNNGG	3 cut(s)	58, 194, 513
BseGI	GGATG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	512
BseRI	GAGGAG	1 cut(s)	449
BsgI	GTGCAG	2 cut(s)	262, 547
BshFI	GGCC	3 cut(s)	83, 482, 630
BshNI	GGYRCC	2 cut(s)	332, 614
BsiHKAI	GWGCWC	1 cut(s)	123
BsiWI	CGTACG	1 cut(s)	327
BsnI	GGCC	3 cut(s)	83, 482, 630
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	292, 323
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	3 cut(s)	83, 482, 630
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	334, 369, 616
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	287, 331
BspQI	GCTCTTC	2 cut(s)	36, 47
BspT107I	GGYRCC	2 cut(s)	332, 614
BsrDI	GCAATG	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	58, 194, 513
BssMI	GATC	2 cut(s)	292, 323
BssT1I	CCWWGG	2 cut(s)	58, 194
Bst4CI	ACNGT	3 cut(s)	332, 421, 514
Bst6I	CTCTTC	2 cut(s)	36, 47
BstC8I	GCNNGC	2 cut(s)	190, 224
BstDEI	CTNAG	2 cut(s)	260, 519
BstDSI	CCRYGG	2 cut(s)	58, 513
BstF5I	GGATG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	295, 326
BstMBI	GATC	2 cut(s)	292, 323
BstNSI	RCATGY	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	159
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuI	GTATCC	2 cut(s)	173, 713
BsuRI	GGCC	3 cut(s)	83, 482, 630
BtgI	CCRYGG	2 cut(s)	58, 513
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	570
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	190, 224
CaiI	CAGNNNCTG	1 cut(s)	534
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	510
Csp6I	GTAC	5 cut(s)	16, 328, 333, 615, 739
CviAII	CATG	3 cut(s)	59, 189, 484
CviQI	GTAC	5 cut(s)	16, 328, 333, 615, 739
DdeI	CTNAG	2 cut(s)	260, 519
DpnI	GATC	2 cut(s)	294, 325
DpnII	GATC	2 cut(s)	292, 323
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	36, 47
EarI	CTCTTC	2 cut(s)	36, 47
Ecl136II	GAGCTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	58, 194
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	58, 194
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	2 cut(s)	58, 194
FaeI	CATG	3 cut(s)	62, 192, 487
FatI	CATG	3 cut(s)	58, 188, 483
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	195, 444
GlaI	GCGC	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	83, 482, 630
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	3 cut(s)	62, 192, 487
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	2 cut(s)	155, 583
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	256
HpyCH4III	ACNGT	3 cut(s)	332, 421, 514
HpyCH4V	TGCA	6 cut(s)	188, 279, 470, 528, 597, 636
HpyF3I	CTNAG	2 cut(s)	260, 519
Hsp92II	CATG	3 cut(s)	62, 192, 487
HspAI	GCGC	1 cut(s)	575
KpnI	GGTACC	2 cut(s)	336, 618
Kzo9I	GATC	2 cut(s)	292, 323
LguI	GCTCTTC	2 cut(s)	36, 47
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	198, 272, 303, 309, 328, 384, 493, 547, 591
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	2 cut(s)	195, 444
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	294, 325
MboI	GATC	2 cut(s)	292, 323
MboII	GAAGA	4 cut(s)	23, 34, 37, 164
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	2 cut(s)	91, 710
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	7 cut(s)	94, 315, 352, 358, 427, 532, 641
Mox20I	TGGCCA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	2 cut(s)	51, 504
Msp20I	TGGCCA	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	292, 323
NlaIII	CATG	3 cut(s)	62, 192, 487
NlaIV	GGNNCC	3 cut(s)	334, 369, 616
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PciSI	GCTCTTC	2 cut(s)	36, 47
PfeI	GAWTC	1 cut(s)	583
Pfl23II	CGTACG	1 cut(s)	327
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	123
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	334, 369, 616
PspPI	GGNCC	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	534
RsaI	GTAC	5 cut(s)	17, 329, 334, 616, 740
RsaNI	GTAC	5 cut(s)	16, 328, 333, 615, 739
SacI	GAGCTC	1 cut(s)	123
SapI	GCTCTTC	2 cut(s)	36, 47
SaqAI	TTAA	2 cut(s)	51, 504
Sau3AI	GATC	2 cut(s)	292, 323
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	9 cut(s)	31, 123, 261, 266, 317, 646, 688, 705, 755
SfaNI	GCATC	1 cut(s)	649
SinI	GGWCC	1 cut(s)	510
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	91, 710
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	2 cut(s)	195, 444
SstI	GAGCTC	1 cut(s)	123
StyI	CCWWGG	2 cut(s)	58, 194
TaaI	ACNGT	3 cut(s)	332, 421, 514
TaqI	TCGA	3 cut(s)	123, 150, 654
TasI	AATT	2 cut(s)	91, 710
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	2 cut(s)	51, 504
Tru9I	TTAA	2 cut(s)	51, 504
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	510
XceI	RCATGY	1 cut(s)	192
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 316
XmaJI	CCTAGG	1 cut(s)	194
XspI	CTAG	2 cut(s)	195, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.