Rroxscaffold_3G00257880

Enhancer of polycomb-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000786
Physical Location & Seq
Forward (+)
52167824 .. 52191908
24085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257880.1

Sequence Viewer

Length: 918 bp
ATGTCTCCAGTGATGAGAGCAGAGTGGGCTAATGAAACCGAAGGTCCGGATGAAATTGTAGGCCCGGACCAAGGAAAGCAAAGAGAAGAGTTTAGAGCTCCCTGGGATTTATTGAAGAATAGCACAAAGCGAATGTTGAAGTCAAAAAGATCGCCCAAGTTGTCGGAGAAAAATTTCAGCGCAGATTCAGCACTGTTCGGTTGGCGTCACCGTTTTCTCGCGATTGAGAGTTTTGAGTCCGAGTTTAGGACCGAGTCGACTCGGAGACAAGCGACGAGTAAGTCAAGGAAGAGGAAGAGCGTGAGGCCGCGAGTGGTGCTGCTTCGGAATTTGAGGAATGAAATGCCATTGGTGAAGATGAGGAGGAACACGAACCTTTTCGAGATAAGGAAGGAAAGGGTGGACGGTGCCCGAGTCTTGCGTGCGGGTGAAGTATCGAAAGTGAGATCCCCCGAAAGTCCTTGTATCCAAGGCATTGAACCCTTAGCCGAGATTGTTCCTTCCTCGGCTTTCAATCGCTCAACAAAGTCAGAAAAGCTTACTACATCTACATTTGCAACTTGGCCTTATGGCCGTGTGCTGGCACGCCCGCAATCTACTCACCAAGAAGGACGTTTGTTCCTTGATCCCTCTGCTACCTTGGCCGAGATGGTTTTCAGAGGCAACAATCCCATACTAAGATTGAAGAAAGACAATCGAGTTTCACGGACTCCACTACATGTGGAGCCAAGAACAGAAAGGAATCAATTAGTGAGAGAAACCCTAAGACCGAGTTTCGGACTCGTTAGATCTCTCTTGTCCGGTAGCACCCTAACATTTGGGTTGACCTCCGGTCTCATTGGTGTTACGTGGTCCGATGTTGGACATGTGATTAATGCTAGGGCTTGGAGGCGGCTTCTTAGGAGCTCTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPL1

Protein Analysis

305

Amino Acids

34.83

Weight (kDa)

11.24

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 257
AccII CGCG 2 cut(s) 221, 310
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 4 cut(s) 308, 425, 590, 892
AclWI GGATC 2 cut(s) 441, 620
AcoI YGGCCR 2 cut(s) 571, 642
AcsI RAATTY 2 cut(s) 172, 328
AcyI GRCGYC 1 cut(s) 205
AfiI CCNNNNNNNGG 4 cut(s) 71, 246, 580, 776
AflIII ACRYGT 2 cut(s) 718, 865
AgsI TTSAA 5 cut(s) 115, 139, 479, 514, 685
AhdI GACNNNNNGTC 1 cut(s) 831
AjnI CCWGG 1 cut(s) 101
AluBI AGCT 3 cut(s) 98, 538, 906
AluI AGCT 3 cut(s) 98, 538, 906
Alw21I GWGCWC 2 cut(s) 100, 908
Alw26I GTCTC 3 cut(s) 9, 259, 839
AlwI GGATC 2 cut(s) 441, 620
Ama87I CYCGRG 1 cut(s) 411
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 5 cut(s) 61, 305, 563, 571, 642
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 2 cut(s) 172, 328
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 2 cut(s) 173, 377
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 5 cut(s) 44, 62, 67, 249, 852
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 4 cut(s) 200, 364, 440, 593
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 4 cut(s) 44, 67, 249, 852
BaeGI GKGCMC 1 cut(s) 412
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 2 cut(s) 100, 908
Bbv12I GWGCWC 2 cut(s) 100, 908
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 643
BceAI ACGGC 1 cut(s) 558
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 476
BcnI CCSGG 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 9, 259, 839
BfaI CTAG 1 cut(s) 879
BfuI GTATCC 1 cut(s) 476
BglII AGATCT 1 cut(s) 788
BisI GCNGC 3 cut(s) 308, 320, 893
BlsI GCNGC 3 cut(s) 309, 321, 894
Bme1390I CCNGG 2 cut(s) 65, 103
Bme18I GGWCC 4 cut(s) 44, 67, 249, 852
BmeRI GACNNNNNGTC 1 cut(s) 831
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 5 cut(s) 44, 62, 67, 249, 852
BmiI GGNNCC 2 cut(s) 409, 726
BmrFI CCNGG 2 cut(s) 65, 103
Bpu10I CCTNAGC 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 205
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 6 cut(s) 70, 101, 102, 469, 504, 639
BsaWI WCCGGW 3 cut(s) 46, 800, 830
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 246, 580, 776
Bse1I ACTGG 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 6 cut(s) 70, 101, 102, 469, 504, 639
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 4 cut(s) 71, 246, 580, 776
BseNI ACTGG 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 2 cut(s) 221, 310
BshFI GGCC 5 cut(s) 63, 307, 565, 573, 644
BshNI GGYRCC 1 cut(s) 407
BsiHKAI GWGCWC 2 cut(s) 100, 908
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 4 cut(s) 47, 65, 801, 831
BslI CCNNNNNNNGG 4 cut(s) 71, 246, 580, 776
BsmAI GTCTC 3 cut(s) 9, 259, 839
BsnI GGCC 5 cut(s) 63, 307, 565, 573, 644
Bso31I GGTCTC 1 cut(s) 839
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 3 cut(s) 100, 412, 908
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 4 cut(s) 149, 446, 625, 788
Bsp68I TCGCGA 1 cut(s) 221
BspACI CCGC 4 cut(s) 308, 425, 590, 892
BspANI GGCC 5 cut(s) 63, 307, 565, 573, 644
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 2 cut(s) 221, 310
BspLI GGNNCC 2 cut(s) 409, 726
BspPI GGATC 2 cut(s) 441, 620
BspQI GCTCTTC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 839
BsrI ACTGG 1 cut(s) 8
BssECI CCNNGG 6 cut(s) 70, 101, 102, 469, 504, 639
BssMI GATC 4 cut(s) 149, 446, 625, 788
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 3 cut(s) 70, 469, 639
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 3 cut(s) 195, 212, 407
Bst6I CTCTTC 3 cut(s) 81, 284, 290
BstACI GRCGYC 1 cut(s) 205
BstBAI YACGTR 1 cut(s) 849
BstC8I GCNNGC 4 cut(s) 423, 582, 586, 590
BstDEI CTNAG 4 cut(s) 484, 677, 764, 899
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 221, 310
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 4 cut(s) 152, 449, 628, 791
BstMAI GTCTC 3 cut(s) 9, 259, 839
BstMBI GATC 4 cut(s) 149, 446, 625, 788
BstMWI GCNNNNNNNGC 4 cut(s) 26, 188, 316, 641
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 2 cut(s) 722, 869
BstSCI CCNGG 2 cut(s) 63, 101
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 2 cut(s) 221, 310
BstV1I GCAGC 1 cut(s) 306
BstX2I RGATCY 2 cut(s) 446, 788
BstYI RGATCY 2 cut(s) 446, 788
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 5 cut(s) 63, 307, 565, 573, 644
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 15, 191
BtuMI TCGCGA 1 cut(s) 221
Cac8I GCNNGC 4 cut(s) 423, 582, 586, 590
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 44, 62, 67, 249, 852
CseI GACGC 1 cut(s) 194
CviAII CATG 2 cut(s) 719, 866
DdeI CTNAG 4 cut(s) 484, 677, 764, 899
DpnI GATC 4 cut(s) 151, 448, 627, 790
DpnII GATC 4 cut(s) 149, 446, 625, 788
DrdI GACNNNNNNGTC 1 cut(s) 280
DriI GACNNNNNGTC 1 cut(s) 831
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 2 cut(s) 571, 642
Eam1104I CTCTTC 3 cut(s) 81, 284, 290
Eam1105I GACNNNNNGTC 1 cut(s) 831
EarI CTCTTC 3 cut(s) 81, 284, 290
Ecl136II GAGCTC 2 cut(s) 98, 906
Eco130I CCWWGG 3 cut(s) 70, 469, 639
Eco24I GRGCYC 2 cut(s) 100, 908
Eco31I GGTCTC 1 cut(s) 839
Eco47I GGWCC 4 cut(s) 44, 67, 249, 852
Eco53kI GAGCTC 2 cut(s) 98, 906
Eco88I CYCGRG 1 cut(s) 411
EcoICRI GAGCTC 2 cut(s) 98, 906
EcoRII CCWGG 1 cut(s) 101
EcoT14I CCWWGG 3 cut(s) 70, 469, 639
EcoT38I GRGCYC 2 cut(s) 100, 908
ErhI CCWWGG 3 cut(s) 70, 469, 639
FaeI CATG 2 cut(s) 722, 869
FaiI YATR 4 cut(s) 570, 674, 720, 867
FatI CATG 2 cut(s) 718, 865
FauI CCCGC 2 cut(s) 418, 597
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 308, 320, 893
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 2 cut(s) 100, 908
Fsp4HI GCNGC 3 cut(s) 308, 320, 893
FspBI CTAG 1 cut(s) 879
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 308, 320, 893
HaeIII GGCC 5 cut(s) 63, 307, 565, 573, 644
HapII CCGG 4 cut(s) 47, 65, 801, 831
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 722, 869
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 2 cut(s) 258, 825
HindII GTYRAC 2 cut(s) 258, 825
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 8 cut(s) 185, 236, 254, 259, 414, 709, 742, 780
HpaII CCGG 4 cut(s) 47, 65, 801, 831
HphI GGTGA 4 cut(s) 200, 364, 440, 593
Hpy166II GTNNAC 3 cut(s) 258, 403, 825
Hpy188I TCNGA 8 cut(s) 166, 241, 264, 327, 532, 659, 779, 856
Hpy188III TCNNGA 3 cut(s) 47, 220, 382
Hpy8I GTNNAC 3 cut(s) 258, 403, 825
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 4 cut(s) 35, 385, 510, 602
HpyCH4III ACNGT 3 cut(s) 195, 212, 407
HpyCH4IV ACGT 2 cut(s) 613, 848
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 188, 316, 641
HpyF3I CTNAG 4 cut(s) 484, 677, 764, 899
HpySE526I ACGT 2 cut(s) 613, 848
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 722, 869
HspAI GCGC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 4 cut(s) 149, 446, 625, 788
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 3 cut(s) 103, 724, 903
LpnPI CCDG 8 cut(s) 21, 60, 78, 88, 115, 566, 814, 844
Lsp1109I GCAGC 1 cut(s) 306
MaeI CTAG 1 cut(s) 879
MaeII ACGT 2 cut(s) 613, 848
MaeIII GTNAC 2 cut(s) 206, 844
MalI GATC 4 cut(s) 151, 448, 627, 790
MboI GATC 4 cut(s) 149, 446, 625, 788
MboII GAAGA 6 cut(s) 98, 127, 301, 307, 367, 697
MflI RGATCY 2 cut(s) 446, 788
MhlI GDGCHC 3 cut(s) 100, 412, 908
MluCI AATT 4 cut(s) 54, 172, 328, 746
MlyI GAGTC 6 cut(s) 245, 253, 263, 423, 703, 774
MmeI TCCRAC 2 cut(s) 144, 841
MroI TCCGGA 1 cut(s) 46
MroXI GAANNNNTTC 2 cut(s) 173, 377
MseI TTAA 1 cut(s) 873
MspI CCGG 4 cut(s) 47, 65, 801, 831
MspR9I CCNGG 2 cut(s) 65, 103
MvaI CCWGG 1 cut(s) 103
MvnI CGCG 2 cut(s) 221, 310
MwoI GCNNNNNNNGC 4 cut(s) 26, 188, 316, 641
NciI CCSGG 1 cut(s) 65
NdeII GATC 4 cut(s) 149, 446, 625, 788
NlaIII CATG 2 cut(s) 722, 869
NlaIV GGNNCC 2 cut(s) 409, 726
NmeAIII GCCGAG 3 cut(s) 485, 514, 670
NmuCI GTSAC 1 cut(s) 206
NruI TCGCGA 1 cut(s) 221
NspI RCATGY 2 cut(s) 722, 869
PasI CCCWGGG 1 cut(s) 102
PciI ACATGT 2 cut(s) 718, 865
PciSI GCTCTTC 1 cut(s) 290
PdmI GAANNNNTTC 2 cut(s) 173, 377
PfeI GAWTC 2 cut(s) 185, 742
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 3 cut(s) 309, 321, 894
PleI GAGTC 6 cut(s) 244, 253, 262, 422, 703, 774
PpsI GAGTC 6 cut(s) 244, 253, 262, 422, 703, 774
Ppu21I YACGTR 1 cut(s) 849
PscI ACATGT 2 cut(s) 718, 865
PshBI ATTAAT 1 cut(s) 873
Psp124BI GAGCTC 2 cut(s) 100, 908
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 409, 726
PspPI GGNCC 5 cut(s) 44, 62, 67, 249, 852
PsuI RGATCY 2 cut(s) 446, 788
PsyI GACNNNGTC 1 cut(s) 253
RruI TCGCGA 1 cut(s) 221
SacI GAGCTC 2 cut(s) 100, 908
SalI GTCGAC 1 cut(s) 256
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 3 cut(s) 308, 320, 893
Sau3AI GATC 4 cut(s) 149, 446, 625, 788
Sau96I GGNCC 5 cut(s) 44, 62, 67, 249, 852
SchI GAGTC 6 cut(s) 245, 253, 263, 423, 703, 774
ScrFI CCNGG 2 cut(s) 65, 103
SduI GDGCHC 3 cut(s) 100, 412, 908
SetI ASST 9 cut(s) 46, 100, 378, 540, 616, 641, 830, 851, 908
SinI GGWCC 4 cut(s) 44, 67, 249, 852
Sse9I AATT 4 cut(s) 54, 172, 328, 746
SsiI CCGC 4 cut(s) 308, 425, 590, 892
SspMI CTAG 1 cut(s) 879
SstI GAGCTC 2 cut(s) 100, 908
StyD4I CCNGG 2 cut(s) 63, 101
StyI CCWWGG 3 cut(s) 70, 469, 639
TaaI ACNGT 3 cut(s) 195, 212, 407
TaiI ACGT 2 cut(s) 616, 851
TaqI TCGA 4 cut(s) 257, 381, 437, 697
TaqII GACCGA 2 cut(s) 266, 784
TasI AATT 4 cut(s) 54, 172, 328, 746
TauI GCSGC 2 cut(s) 310, 895
TfiI GAWTC 2 cut(s) 185, 742
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 2 cut(s) 15, 198
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 48, 66, 354
TspGWI ACGGA 1 cut(s) 721
TspRI CASTG 2 cut(s) 15, 198
Tth111I GACNNNGTC 1 cut(s) 253
VpaK11BI GGWCC 4 cut(s) 44, 67, 249, 852
VspI ATTAAT 1 cut(s) 873
XapI RAATTY 2 cut(s) 172, 328
XceI RCATGY 2 cut(s) 722, 869
XmiI GTMKAC 1 cut(s) 257
XmnI GAANNNNTTC 2 cut(s) 173, 377
XspI CTAG 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.