Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

23694902 .. 23696732

Gene Structure 1831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32810.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATCATGTTCAAGGTCCAGGTGAGAGATGTGAAATCGACGCTGGAGTGTCTGAAACCAGTGATCCAGGAGATAACAGAATACAACAAGGTGTTGAAGAATCAACCAATGGAGGAGGAAGACGCACTTCAGCAAATGAATTTGCAAATAGAGGAGGGCGCGATTCTGGTTCTGAAGTGTTCCAAGGTTGGTGCCTGGAGTTTGAGCAAAAAGTACAAGTACAGCAACCAACTCCTTCAACTGGATCAATCGCTTCACGTACTCTTGCGTTTGCTCGAACTTCAGAAAACAAGGGATCTCAGAGAGACATTGGTTACTGTCAAGAAGATAGAGACCGTCGTCGAGCGAATTGAAGGAAACGTTGCTGCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

125

Amino Acids

14.36

Weight (kDa)

7.72

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 110	2.2e-16	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccII	CGCG	1 cut(s)	161
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	3 cut(s)	58, 252, 303
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	3 cut(s)	113, 194, 266
AfaI	GTAC	3 cut(s)	215, 221, 261
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	4 cut(s)	13, 97, 239, 353
AjnI	CCWGG	3 cut(s)	18, 66, 194
Alw26I	GTCTC	2 cut(s)	299, 326
AlwI	GGATC	3 cut(s)	58, 252, 303
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	352
BciT130I	CCWGG	3 cut(s)	20, 68, 196
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	299, 326
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	3 cut(s)	20, 68, 196
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	3 cut(s)	20, 68, 196
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	2 cut(s)	65, 217
BsaAI	YACGTR	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	59, 246
BseBI	CCWGG	3 cut(s)	20, 68, 196
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	2 cut(s)	59, 246
BseRI	GAGGAG	2 cut(s)	128, 167
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	2 cut(s)	299, 326
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	4 cut(s)	3, 63, 244, 295
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	58, 252, 303
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	59, 246
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	4 cut(s)	3, 63, 244, 295
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	3 cut(s)	20, 68, 196
Bst4CI	ACNGT	2 cut(s)	319, 337
BstBAI	YACGTR	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	4 cut(s)	6, 66, 247, 298
BstMAI	GTCTC	2 cut(s)	299, 326
BstMBI	GATC	4 cut(s)	3, 63, 244, 295
BstNI	CCWGG	3 cut(s)	20, 68, 196
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	18, 66, 194
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	2 cut(s)	49, 131
Csp6I	GTAC	3 cut(s)	214, 220, 260
CviAII	CATG	2 cut(s)	7, 370
CviQI	GTAC	3 cut(s)	214, 220, 260
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	4 cut(s)	5, 65, 246, 297
DpnII	GATC	4 cut(s)	3, 63, 244, 295
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	3 cut(s)	113, 194, 266
EcoRII	CCWGG	3 cut(s)	18, 66, 194
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	10, 373
FaiI	YATR	2 cut(s)	8, 371
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	2 cut(s)	6, 369
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	366
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	2 cut(s)	65, 217
HgaI	GACGC	2 cut(s)	49, 131
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	10, 373
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	100, 163
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	54, 174, 285, 302
Hpy188III	TCNNGA	1 cut(s)	322
Hpy99I	CGWCG	3 cut(s)	43, 341, 344
HpyAV	CCTTC	2 cut(s)	245, 347
HpyCH4III	ACNGT	2 cut(s)	319, 337
HpyCH4IV	ACGT	2 cut(s)	258, 360
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	2 cut(s)	258, 360
Hsp92II	CATG	2 cut(s)	10, 373
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 63, 244, 295
Lsp1109I	GCAGC	1 cut(s)	352
MaeII	ACGT	2 cut(s)	258, 360
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	4 cut(s)	5, 65, 246, 297
MboI	GATC	4 cut(s)	3, 63, 244, 295
MboII	GAAGA	3 cut(s)	109, 131, 337
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	2 cut(s)	139, 348
MnlI	CCTC	4 cut(s)	106, 109, 145, 148
MspR9I	CCNGG	3 cut(s)	20, 68, 196
MvaI	CCWGG	3 cut(s)	20, 68, 196
MvnI	CGCG	1 cut(s)	161
NdeII	GATC	4 cut(s)	3, 63, 244, 295
NlaIII	CATG	2 cut(s)	10, 373
NlaIV	GGNNCC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	100, 163
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	259
PshAI	GACNNNNGTC	1 cut(s)	338
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	3 cut(s)	18, 66, 194
PspGI	CCWGG	3 cut(s)	18, 66, 194
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	3 cut(s)	215, 221, 261
RsaNI	GTAC	3 cut(s)	214, 220, 260
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	4 cut(s)	3, 63, 244, 295
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	20, 68, 196
SetI	ASST	6 cut(s)	18, 24, 93, 189, 261, 363
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	2 cut(s)	139, 348
StyD4I	CCNGG	3 cut(s)	18, 66, 194
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	319, 337
TaiI	ACGT	2 cut(s)	261, 363
TaqI	TCGA	3 cut(s)	38, 276, 342
TasI	AATT	2 cut(s)	139, 348
TatI	WGTACW	2 cut(s)	213, 219
TfiI	GAWTC	2 cut(s)	100, 163
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.