Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

24631735 .. 24632031

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0261500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGAGCCTCCAGTGGGCCAAGGCTTTCCGGAATGCAGAGACAAGTACTTAGTCTGTACAGAGGGTTCTTGCGGGCAGCTCGTTTAAAATCTGCTGAAGATCGACACAAGATTGAGTCACTTGTGTCGAATGAGTTCCGCCACAATGCCAAGAATGTAGACCGCAAGAATTTTCTTTACATTGAGTACTTGGTTCGCCGTGGAAGGAAACAGCTTGATCAGCTCAAGAGCCCTGATACTGTTGGATTATCAGCTCTGAATGTGAGTTTCCCTCAAACAAAACATCCTACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

98

Amino Acids

11.22

Weight (kDa)

10.73

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_LYR	PF05347	14 - 74	2.6e-12	Complex 1 protein (LYR family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	3 cut(s)	73, 139, 163
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	3 cut(s)	48, 59, 188
AfiI	CCNNNNNNNGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	80, 214, 223, 254
AluI	AGCT	4 cut(s)	80, 214, 223, 254
Alw26I	GTCTC	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmcAI	AGTACT	2 cut(s)	48, 188
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	7
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	20, 199
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	20, 199
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp13I	TCCGGA	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	100, 217
BspACI	CCGC	3 cut(s)	73, 139, 163
BspANI	GGCC	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	20, 199
BssMI	GATC	2 cut(s)	100, 217
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	103, 220
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	100, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	47, 58, 187
CviJI	RGCY	8 cut(s)	8, 19, 25, 80, 214, 223, 231, 254
CviKI_1	RGCY	8 cut(s)	8, 19, 25, 80, 214, 223, 231, 254
CviQI	GTAC	3 cut(s)	47, 58, 187
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	102, 219
DpnII	GATC	2 cut(s)	100, 217
DraI	TTTAAA	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	20
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	1 cut(s)	30
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	30, 226
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	50
Kpn2I	TCCGGA	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	100, 217
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	3 cut(s)	25, 43, 246
Lsp1109I	GCAGC	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	102, 219
MboI	GATC	2 cut(s)	100, 217
MboII	GAAGA	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	19, 56, 282
MroI	TCCGGA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	86
MspI	CCGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	2 cut(s)	100, 217
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
RsaI	GTAC	3 cut(s)	48, 59, 188
RsaNI	GTAC	3 cut(s)	47, 58, 187
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	100, 217
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	2 cut(s)	48, 188
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	4 cut(s)	82, 216, 225, 256
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	73, 139, 163
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	103, 128
TasI	AATT	1 cut(s)	169
TatI	WGTACW	3 cut(s)	46, 57, 186
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	117
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	134
ZrmI	AGTACT	2 cut(s)	48, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.