Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

14552027 .. 14552425

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGATCATGTTCAAGGTCCATGTGAGAGATGTGAAATCGACGCTCGACTGTTTGAAACCAGTGATCCAGGAGATAACGGAATACAACAAGCTGTTGAAGAATCAACCAATGGAGGAGGAAGAAGCACTGCAGCACTTGAAATCGCAAATAGAGGAAGGCGCAAATCTGGTTCAAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCTGCAAAAAGTACAAGTACAGCAACCAACTCTTTCAACTTGATCAATCGCTTCACACACTCTTGCAGTTGCTCGAACGGCAGAAAGCAAGAGATGTCTGGGAGACCTTGGTTACGGTCAGGAAGATAGAGACCGTCGTCCAGCGAATTGAAGGAAACGTTTGTGCTATGCAAATTAGTCAATCTGCAACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

15.4

Weight (kDa)

8.33

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 114	1.9e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	215, 221
AgsI	TTSAA	7 cut(s)	13, 55, 97, 139, 173, 239, 353
AjnI	CCWGG	2 cut(s)	66, 194
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	2 cut(s)	299, 326
AlwI	GGATC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	68, 196
BclI	TGATCA	2 cut(s)	3, 244
BcoDI	GTCTC	2 cut(s)	299, 326
BfaI	CTAG	1 cut(s)	397
BfmI	CTRYAG	1 cut(s)	128
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	68, 196
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	68, 196
BoxI	GACNNNNGTC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	217
BsaI	GGTCTC	2 cut(s)	299, 326
BsaJI	CCNNGG	2 cut(s)	183, 309
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	68, 196
BseDI	CCNNGG	2 cut(s)	183, 309
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	299, 326
Bso31I	GGTCTC	2 cut(s)	299, 326
Bsp143I	GATC	3 cut(s)	3, 63, 244
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	2 cut(s)	299, 326
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	183, 309
BssMI	GATC	3 cut(s)	3, 63, 244
BssT1I	CCWWGG	2 cut(s)	183, 309
Bst2UI	CCWGG	2 cut(s)	68, 196
Bst4CI	ACNGT	3 cut(s)	50, 319, 337
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	6, 66, 247
BstMAI	GTCTC	2 cut(s)	299, 326
BstMBI	GATC	3 cut(s)	3, 63, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	2 cut(s)	68, 196
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	66, 194
BstSFI	CTRYAG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	66, 125
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	214, 220
CviAII	CATG	2 cut(s)	7, 20
CviJI	RGCY	1 cut(s)	91
CviKI_1	RGCY	1 cut(s)	91
CviQI	GTAC	2 cut(s)	214, 220
DpnI	GATC	3 cut(s)	5, 65, 246
DpnII	GATC	3 cut(s)	3, 63, 244
Eco130I	CCWWGG	2 cut(s)	183, 309
Eco31I	GGTCTC	2 cut(s)	299, 326
Eco47I	GGWCC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	66, 194
EcoT14I	CCWWGG	2 cut(s)	183, 309
ErhI	CCWWGG	2 cut(s)	183, 309
FaeI	CATG	2 cut(s)	10, 23
FaiI	YATR	3 cut(s)	8, 21, 371
FatI	CATG	2 cut(s)	6, 19
FbaI	TGATCA	2 cut(s)	3, 244
Fnu4HI	GCNGC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	397
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	131
GsuI	CTGGAG	1 cut(s)	217
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	10, 23
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	322
Hpy99I	CGWCG	2 cut(s)	43, 341
HpyAV	CCTTC	2 cut(s)	149, 347
HpyCH4III	ACNGT	3 cut(s)	50, 319, 337
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	5 cut(s)	130, 207, 268, 373, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	10, 23
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	2 cut(s)	3, 244
Kzo9I	GATC	3 cut(s)	3, 63, 244
LpnPI	CCDG	9 cut(s)	53, 72, 80, 152, 181, 208, 286, 307, 356
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	397
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	5, 65, 246
MboI	GATC	3 cut(s)	3, 63, 244
MboII	GAAGA	3 cut(s)	109, 131, 337
MluCI	AATT	2 cut(s)	348, 375
MnlI	CCTC	3 cut(s)	106, 109, 145
MspR9I	CCNGG	2 cut(s)	68, 196
MvaI	CCWGG	2 cut(s)	68, 196
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	3 cut(s)	3, 63, 244
NlaIII	CATG	2 cut(s)	10, 23
NlaIV	GGNNCC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	132
PshAI	GACNNNNGTC	1 cut(s)	338
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	66, 194
PspGI	CCWGG	2 cut(s)	66, 194
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	132
RsaI	GTAC	2 cut(s)	215, 221
RsaNI	GTAC	2 cut(s)	214, 220
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	3 cut(s)	3, 63, 244
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	68, 196
SetI	ASST	5 cut(s)	18, 93, 189, 311, 363
SfcI	CTRYAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	2 cut(s)	348, 375
SspMI	CTAG	1 cut(s)	397
StyD4I	CCNGG	2 cut(s)	66, 194
StyI	CCWWGG	2 cut(s)	183, 309
TaaI	ACNGT	3 cut(s)	50, 319, 337
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	3 cut(s)	38, 45, 276
TasI	AATT	2 cut(s)	348, 375
TatI	WGTACW	2 cut(s)	213, 219
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	2 cut(s)	66, 132
TseI	GCWGC	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	66, 132
VpaK11BI	GGWCC	1 cut(s)	16
XspI	CTAG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.