Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002222.1

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

32144 .. 32542

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002222.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgatcatgttcaaggtccacgtgagagatgtgaaactgacgctggactgtttgaaaccagtagtccaagagatatcagagtataacaagttgttgaataatctaccaatggaggaagagctagcatggcaggacttgaaattgcaaatggaggagggcgctaatctggttcgaaagtgttccaaggttggtgcctggagtttctgcaaaaagtataagtacagcaaccaactctttcaactggatcaatcgcttcaaacactgttgcatttgctcgaagttcagaaaacaagggatgtccaggagaccttagtttctgtaaagaacatagagactgtggtccagcgaattgaaggcaatatttctgccatgcagagtaatcaatccgcaacgtactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

132

Amino Acids

15.34

Weight (kDa)

6.73

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AciI	CCGC	1 cut(s)	387
AclWI	GGATC	1 cut(s)	252
AcvI	CACGTG	1 cut(s)	22
AfaI	GTAC	2 cut(s)	221, 395
AgsI	TTSAA	7 cut(s)	13, 55, 97, 139, 239, 257, 353
AjnI	CCWGG	2 cut(s)	194, 300
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	299, 326
AlwI	GGATC	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	16, 340
AsuII	TTCGAA	1 cut(s)	172
AsuNHI	GCTAGC	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	16, 340
BanI	GGYRCC	1 cut(s)	191
BbrPI	CACGTG	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	196, 302
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	299, 326
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	162
Bme1390I	CCNGG	2 cut(s)	196, 302
Bme18I	GGWCC	2 cut(s)	16, 340
BmgT120I	GGNCC	2 cut(s)	16, 340
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	196, 302
BmtI	GCTAGC	1 cut(s)	125
BoxI	GACNNNNGTC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	217
Bpu14I	TTCGAA	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	183
Bse1I	ACTGG	2 cut(s)	59, 246
BseBI	CCWGG	2 cut(s)	196, 302
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	59, 246
BseRI	GAGGAG	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	299, 326
Bso31I	GGTCTC	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	3, 244
BspACI	CCGC	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	252
BspQI	GCTCTTC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	59, 246
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	3, 244
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	196, 302
Bst4CI	ACNGT	3 cut(s)	50, 264, 337
Bst6I	CTCTTC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	22
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	6, 247
BstMAI	GTCTC	2 cut(s)	299, 326
BstMBI	GATC	2 cut(s)	3, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	196, 302
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	194, 300
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	16, 340
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	220, 394
CviAII	CATG	3 cut(s)	7, 126, 370
CviJI	RGCY	1 cut(s)	121
CviKI_1	RGCY	1 cut(s)	121
CviQI	GTAC	2 cut(s)	220, 394
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	2 cut(s)	5, 246
DpnII	GATC	2 cut(s)	3, 244
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	16, 340
Eco72I	CACGTG	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	194, 300
EcoRV	GATATC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	10, 129, 373
FaiI	YATR	6 cut(s)	8, 84, 127, 216, 329, 371
FatI	CATG	3 cut(s)	6, 125, 369
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	308
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	162
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	10, 129, 373
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	79, 285
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	3 cut(s)	50, 264, 337
HpyCH4IV	ACGT	2 cut(s)	21, 392
HpyCH4V	TGCA	4 cut(s)	145, 207, 268, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	2 cut(s)	21, 392
Hsp92II	CATG	3 cut(s)	10, 129, 373
HspAI	GCGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 244
LguI	GCTCTTC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	21, 392
MalI	GATC	2 cut(s)	5, 246
MboI	GATC	2 cut(s)	3, 244
MboII	GAAGA	1 cut(s)	128
MluCI	AATT	2 cut(s)	140, 348
MnlI	CCTC	3 cut(s)	106, 145, 148
MroXI	GAANNNNTTC	1 cut(s)	178
MspR9I	CCNGG	2 cut(s)	196, 302
MvaI	CCWGG	2 cut(s)	196, 302
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	3, 244
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	10, 129, 373
NlaIV	GGNNCC	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	300
PmaCI	CACGTG	1 cut(s)	22
PmlI	CACGTG	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	194, 300
PspCI	CACGTG	1 cut(s)	22
PspGI	CCWGG	2 cut(s)	194, 300
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	16, 340
RsaI	GTAC	2 cut(s)	221, 395
RsaNI	GTAC	2 cut(s)	220, 394
SapI	GCTCTTC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	3, 244
Sau96I	GGNCC	2 cut(s)	16, 340
ScrFI	CCNGG	2 cut(s)	196, 302
SetI	ASST	6 cut(s)	18, 24, 123, 189, 311, 395
SfuI	TTCGAA	1 cut(s)	172
SinI	GGWCC	2 cut(s)	16, 340
Sse9I	AATT	2 cut(s)	140, 348
SsiI	CCGC	1 cut(s)	387
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	194, 300
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	3 cut(s)	50, 264, 337
TaiI	ACGT	2 cut(s)	24, 395
TaqI	TCGA	2 cut(s)	172, 276
TasI	AATT	2 cut(s)	140, 348
TatI	WGTACW	1 cut(s)	219
TscAI	CASTG	1 cut(s)	267
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	16, 340
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.