Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

55321220 .. 55321639

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG412800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTCGACAGCGTTATAGCAGTGATGGAGAAGATGATCATGTTCAAGGACCGCGTCAGAGATGTGAAACTGACGCTCGAGTGCTTGAAACCAGTGATCCACGAGATAGCGGAATACAACAAGGTGTTGAATCAACCGATGGAGGAATTACAGGATTTAAAGGCAAAACTGGAGGAGGGCGAAGATTTGGTACGAAAGTGCTCCAAGGTTGGTCCCTGGAGTTTCTGCAAGAGGTACAGATGCACCAACCAGCTTGATCAACTGGACACATCGCTTCACTCACTCTTGCATGTACTGGAACTGCAAAAGACGAGGGATCTCAGGGAGACCTTGGTTACTGTCAGGAACATAGAGACCGTCGTCCGGCGAATTGAAGGAAATATTTCTTACATGCAAATTAGTCAATCTGCAACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

16.27

Weight (kDa)

6.32

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 120	1.3e-23	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	52, 110
AclWI	GGATC	2 cut(s)	91, 324
AfaI	GTAC	3 cut(s)	192, 236, 294
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	46, 88, 130, 374
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	2 cut(s)	320, 347
AlwI	GGATC	2 cut(s)	91, 324
Ama87I	CYCGRG	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	49, 212
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	49, 212
BaeI	ACNNNNGTAYC	2 cut(s)	182, 215
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
BauI	CACGAG	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	203
BccI	CCATC	2 cut(s)	19, 133
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	2 cut(s)	36, 256
BcoDI	GTCTC	2 cut(s)	320, 347
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	2 cut(s)	49, 212
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	49, 212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	230
BoxI	GACNNNNGTC	1 cut(s)	359
BpmI	CTGGAG	2 cut(s)	191, 238
BsaI	GGTCTC	2 cut(s)	320, 347
BsaJI	CCNNGG	3 cut(s)	204, 215, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	4 cut(s)	92, 174, 267, 300
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	204, 215, 330
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	4 cut(s)	92, 174, 267, 300
BseRI	GAGGAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	320, 347
BsmFI	GGGAC	1 cut(s)	198
Bso31I	GGTCTC	2 cut(s)	320, 347
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	36, 96, 256, 316
BspACI	CCGC	2 cut(s)	52, 110
BspCNI	CTCAG	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	91, 324
BspTNI	GGTCTC	2 cut(s)	320, 347
BsrI	ACTGG	4 cut(s)	92, 174, 267, 300
BssECI	CCNNGG	3 cut(s)	204, 215, 330
BssMI	GATC	4 cut(s)	36, 96, 256, 316
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	204, 330
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	340, 358
BstDEI	CTNAG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	4 cut(s)	39, 99, 259, 319
BstMAI	GTCTC	2 cut(s)	320, 347
BstMBI	GATC	4 cut(s)	36, 96, 256, 316
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	293, 394
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 99
Cfr13I	GGNCC	2 cut(s)	49, 212
CseI	GACGC	2 cut(s)	43, 82
Csp6I	GTAC	3 cut(s)	191, 235, 293
CviAII	CATG	3 cut(s)	40, 290, 391
CviJI	RGCY	1 cut(s)	253
CviKI_1	RGCY	1 cut(s)	253
CviQI	GTAC	3 cut(s)	191, 235, 293
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	4 cut(s)	38, 98, 258, 318
DpnII	GATC	4 cut(s)	36, 96, 256, 316
DraI	TTTAAA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	204, 330
Eco31I	GGTCTC	2 cut(s)	320, 347
Eco47I	GGWCC	2 cut(s)	49, 212
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	204, 330
ErhI	CCWWGG	2 cut(s)	204, 330
FaeI	CATG	3 cut(s)	43, 293, 394
FaiI	YATR	5 cut(s)	17, 41, 291, 350, 392
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	3 cut(s)	39, 289, 390
FbaI	TGATCA	2 cut(s)	36, 256
GsuI	CTGGAG	2 cut(s)	191, 238
HapII	CCGG	1 cut(s)	364
HgaI	GACGC	2 cut(s)	43, 82
Hin1II	CATG	3 cut(s)	43, 293, 394
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	340, 358
HpyCH4V	TGCA	6 cut(s)	228, 243, 289, 304, 394, 410
HpyF3I	CTNAG	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	43, 293, 394
Ksp22I	TGATCA	2 cut(s)	36, 256
Kzo9I	GATC	4 cut(s)	36, 96, 256, 316
LmnI	GCTCC	1 cut(s)	206
LweI	GCATC	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	38, 98, 258, 318
MboI	GATC	4 cut(s)	36, 96, 256, 316
MboII	GAAGA	2 cut(s)	43, 194
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	3 cut(s)	146, 369, 396
MnlI	CCTC	5 cut(s)	136, 166, 169, 225, 306
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	54
NdeII	GATC	4 cut(s)	36, 96, 256, 316
NlaIII	CATG	3 cut(s)	43, 293, 394
NlaIV	GGNNCC	1 cut(s)	214
NspI	RCATGY	2 cut(s)	293, 394
PaeR7I	CTCGAG	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	49, 212
PspXI	VCTCGAGB	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	3 cut(s)	192, 236, 294
RsaNI	GTAC	3 cut(s)	191, 235, 293
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	4 cut(s)	36, 96, 256, 316
Sau96I	GGNCC	2 cut(s)	49, 212
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	126, 210, 236, 255, 332
SfaNI	GCATC	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	49, 212
SlaI	CTCGAG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	146, 369, 396
SsiI	CCGC	2 cut(s)	52, 110
SspI	AATATT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	204, 330
TaaI	ACNGT	2 cut(s)	340, 358
TaqI	TCGA	2 cut(s)	6, 78
TasI	AATT	3 cut(s)	146, 369, 396
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	27, 99
TspRI	CASTG	2 cut(s)	27, 99
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	49, 212
XceI	RCATGY	2 cut(s)	293, 394
XhoI	CTCGAG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.