Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

414093 .. 416199

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG005200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCCACGGAAAAGTTAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCTACCAAAGACTCGGAGATGGCACAGAGGGAAGCGTTCGAGATGAGCGTCGCAGGATCTGGAGAGGTGGAGCCTTCGATCAGTCAGATCCTTGGAAAGATTGACAGGTTTACTGAGATTTTCAAATGGAGGGGGAAGTACGTTGAGCTAATTCGCAAGTGCTCCAAGGTTGGTCCTTTGAGTCCTTACAAAAAATATAAGTACGCAAACAAACTAGTTGAATTGGGAAATTCTATGCAAAGACTGTTGGATATACTGAAAGTGCATGGCATAAGAGATGTGAAGAAAACCTTGGTTACGGTAAAGAATATTGAGAATATGGTCCAGCAAATTGATCAATTTTGGGAGACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

137

Amino Acids

15.63

Weight (kDa)

9.43

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	67 - 125	1.2e-07	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	2 cut(s)	121, 139
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	2 cut(s)	197, 260
AgsI	TTSAA	2 cut(s)	181, 278
AhlI	ACTAGT	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	26, 398
AlwI	GGATC	2 cut(s)	121, 139
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	3 cut(s)	4, 230, 379
AvaII	GGWCC	2 cut(s)	230, 379
Bbv12I	GWGCWC	1 cut(s)	221
BccI	CCATC	1 cut(s)	70
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	26, 398
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	230, 379
BmgT120I	GGNCC	3 cut(s)	4, 230, 379
BmiI	GGNNCC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	7, 148, 222, 348
BseDI	CCNNGG	4 cut(s)	7, 148, 222, 348
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	26, 398
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	48, 113, 135, 144, 391
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	121, 139
BssECI	CCNNGG	4 cut(s)	7, 148, 222, 348
BssMI	GATC	5 cut(s)	48, 113, 135, 144, 391
BssT1I	CCWWGG	3 cut(s)	148, 222, 348
Bst4CI	ACNGT	2 cut(s)	303, 358
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	7
BstKTI	GATC	5 cut(s)	51, 116, 138, 147, 394
BstMAI	GTCTC	2 cut(s)	26, 398
BstMBI	GATC	5 cut(s)	48, 113, 135, 144, 391
BstX2I	RGATCY	2 cut(s)	113, 144
BstYI	RGATCY	2 cut(s)	113, 144
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	4, 230, 379
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	196, 259
CviAII	CATG	1 cut(s)	323
CviJI	RGCY	3 cut(s)	5, 130, 205
CviKI_1	RGCY	3 cut(s)	5, 130, 205
CviQI	GTAC	2 cut(s)	196, 259
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	5 cut(s)	50, 115, 137, 146, 393
DpnII	GATC	5 cut(s)	48, 113, 135, 144, 391
Eco130I	CCWWGG	3 cut(s)	148, 222, 348
Eco47I	GGWCC	2 cut(s)	230, 379
EcoT14I	CCWWGG	3 cut(s)	148, 222, 348
ErhI	CCWWGG	3 cut(s)	148, 222, 348
FaeI	CATG	1 cut(s)	326
FaiI	YATR	6 cut(s)	255, 293, 311, 324, 329, 377
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	391
FspBI	CTAG	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	2 cut(s)	68, 238
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	73, 144
Hpy188III	TCNNGA	3 cut(s)	29, 97, 117
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	2 cut(s)	303, 358
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	295, 322
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	48, 113, 135, 144, 391
LmnI	GCTCC	2 cut(s)	127, 224
LpnPI	CCDG	4 cut(s)	96, 102, 148, 395
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	5 cut(s)	50, 115, 137, 146, 393
MboI	GATC	5 cut(s)	48, 113, 135, 144, 391
MboII	GAAGA	2 cut(s)	43, 352
MflI	RGATCY	2 cut(s)	113, 144
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	5 cut(s)	207, 278, 286, 387, 395
MlyI	GAGTC	2 cut(s)	62, 247
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	47, 52, 78, 115, 180
NdeII	GATC	5 cut(s)	48, 113, 135, 144, 391
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PleI	GAGTC	2 cut(s)	62, 246
PpsI	GAGTC	2 cut(s)	62, 246
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	3 cut(s)	4, 230, 379
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	113, 144
RsaI	GTAC	2 cut(s)	197, 260
RsaNI	GTAC	2 cut(s)	196, 259
Sau3AI	GATC	5 cut(s)	48, 113, 135, 144, 391
Sau96I	GGNCC	3 cut(s)	4, 230, 379
SchI	GAGTC	2 cut(s)	62, 247
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	6 cut(s)	126, 167, 201, 207, 228, 350
SinI	GGWCC	2 cut(s)	230, 379
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	5 cut(s)	207, 278, 286, 387, 395
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	3 cut(s)	148, 222, 348
TaaI	ACNGT	2 cut(s)	303, 358
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	96, 134
TasI	AATT	5 cut(s)	207, 278, 286, 387, 395
TspGWI	ACGGA	1 cut(s)	24
VpaK11BI	GGWCC	2 cut(s)	230, 379
XapI	RAATTY	1 cut(s)	286
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.