Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

54746304 .. 54746727

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTCGACAGCGTTATTGCAGTGATGGAGAAGATGATCATGTTCAAGGACCGCGTCAGAGATGTGAAACTGACGCTCGATTGCTTGAAACCAGTGATCCACGAGATAGCGGAATACAACAAGGTGTTGAATCAACCGATGGAGGAATTACATGATTTAAAGTCAAAACTGGAGGAGGGCGAAGATTTGGTCCGAAAGTACGTGCTCCAAGGTTGGTCCCTGGAGTTTCTGCAAAAGAAGACTAGGGATCTCAGGGAGACCTTGGTTACAGTCAGGAACATAGAGAACGTCGTCCGGCGAATTGAAGGAAATATTTCTTCCATCCAAATTAGTCAATCTGCAACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

116

Amino Acids

13.56

Weight (kDa)

5.75

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 68	5e-11	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	52, 110
AclWI	GGATC	2 cut(s)	91, 255
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	46, 88, 130, 305
AjnI	CCWGG	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	91, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	313
AspS9I	GGNCC	3 cut(s)	49, 190, 216
AvaII	GGWCC	3 cut(s)	49, 190, 216
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	3 cut(s)	19, 133, 329
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	3 cut(s)	49, 190, 216
BmgT120I	GGNCC	3 cut(s)	49, 190, 216
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	2 cut(s)	191, 242
BsaAI	YACGTR	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	208, 219, 261
Bse1I	ACTGG	2 cut(s)	92, 174
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	208, 219, 261
BseGI	GGATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	92, 174
BseRI	GAGGAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	36, 96, 247
BspACI	CCGC	2 cut(s)	52, 110
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	91, 255
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	92, 174
BssECI	CCNNGG	3 cut(s)	208, 219, 261
BssMI	GATC	3 cut(s)	36, 96, 247
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	208, 261
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	271
BstBAI	YACGTR	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	39, 99, 250
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	3 cut(s)	36, 96, 247
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 99
Cfr13I	GGNCC	3 cut(s)	49, 190, 216
CseI	GACGC	2 cut(s)	43, 82
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	40, 152
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	38, 98, 249
DpnII	GATC	3 cut(s)	36, 96, 247
DraI	TTTAAA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	208, 261
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	3 cut(s)	49, 190, 216
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	208, 261
ErhI	CCWWGG	2 cut(s)	208, 261
FaeI	CATG	2 cut(s)	43, 155
FaiI	YATR	3 cut(s)	41, 153, 281
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	39, 151
FbaI	TGATCA	1 cut(s)	36
FokI	GGATG	1 cut(s)	308
FspBI	CTAG	1 cut(s)	243
GsuI	CTGGAG	2 cut(s)	191, 242
HapII	CCGG	1 cut(s)	295
HgaI	GACGC	2 cut(s)	43, 82
Hin1II	CATG	2 cut(s)	43, 155
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	295
Hpy188I	TCNGA	2 cut(s)	59, 194
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	201, 288
HpyCH4V	TGCA	3 cut(s)	20, 232, 341
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	2 cut(s)	201, 288
Hsp92II	CATG	2 cut(s)	43, 155
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	36, 96, 247
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	105, 155, 206, 233, 238, 259, 308
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	201, 288
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	38, 98, 249
MboI	GATC	3 cut(s)	36, 96, 247
MboII	GAAGA	4 cut(s)	43, 194, 250, 309
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	3 cut(s)	146, 300, 327
MnlI	CCTC	3 cut(s)	136, 166, 169
MroXI	GAANNNNTTC	1 cut(s)	313
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	54
NdeII	GATC	3 cut(s)	36, 96, 247
NlaIII	CATG	2 cut(s)	43, 155
NlaIV	GGNNCC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	3 cut(s)	49, 190, 216
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	158
Sau3AI	GATC	3 cut(s)	36, 96, 247
Sau96I	GGNCC	3 cut(s)	49, 190, 216
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	5 cut(s)	126, 204, 214, 263, 291
SinI	GGWCC	3 cut(s)	49, 190, 216
Sse9I	AATT	3 cut(s)	146, 300, 327
SsiI	CCGC	2 cut(s)	52, 110
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	208, 261
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	204, 291
TaqI	TCGA	2 cut(s)	6, 78
TasI	AATT	3 cut(s)	146, 300, 327
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	27, 99
TspRI	CASTG	2 cut(s)	27, 99
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	3 cut(s)	49, 190, 216
XmnI	GAANNNNTTC	1 cut(s)	313
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.