Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

55294928 .. 55295771

Gene Structure 844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTAATTGATGGAATCTTAGAATTGATGGAGAAGATGATCATGTTCCAGGTCCACGTGAGAGATGTGAAATCGACGCTCGACTGTTTGAAACCAGTGATCCAGGAGATAACGGAATACAACGAGGTGTTGAAGAATCAACCAATGGAGGAGGAAGAAGCACTGCAGCACTTGAAATCGCAAATAGAAGAAGGCGCAATTCTGGTTCAAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCCGCAAGAAGTACAAGTACAGCAACCAACTCTTTCAACTTGATCAATCGCTTCACACACTCTTGCAATTGCTCGAAGTGCAGAAAGCAAGAGATGTCTGGGAGACCTTGGTTACGGTCAGGAAGATAGAGACCGTCGTCCAGCGAATTGAAGGAAACGTTTGTGCTATGCAAATTAGTCAGTCTGCAACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

144

Amino Acids

16.77

Weight (kDa)

5.66

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 126	1.5e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	241
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	1 cut(s)	94
AcvI	CACGTG	1 cut(s)	58
AfaI	GTAC	2 cut(s)	251, 257
AgsI	TTSAA	6 cut(s)	91, 133, 175, 209, 275, 389
AjnI	CCWGG	3 cut(s)	48, 102, 230
Alw26I	GTCTC	2 cut(s)	335, 362
AlwI	GGATC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BbrPI	CACGTG	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	5, 22
BciT130I	CCWGG	3 cut(s)	50, 104, 232
BclI	TGATCA	2 cut(s)	39, 280
BcoDI	GTCTC	2 cut(s)	335, 362
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	3 cut(s)	50, 104, 232
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	50, 104, 232
BoxI	GACNNNNGTC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	58
BsaI	GGTCTC	2 cut(s)	335, 362
BsaJI	CCNNGG	2 cut(s)	219, 345
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	3 cut(s)	50, 104, 232
BseDI	CCNNGG	2 cut(s)	219, 345
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	335, 362
Bso31I	GGTCTC	2 cut(s)	335, 362
Bsp143I	GATC	3 cut(s)	39, 99, 280
BspACI	CCGC	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	94
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	335, 362
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	219, 345
BssMI	GATC	3 cut(s)	39, 99, 280
BssT1I	CCWWGG	2 cut(s)	219, 345
Bst2UI	CCWGG	3 cut(s)	50, 104, 232
Bst4CI	ACNGT	3 cut(s)	86, 355, 373
BstBAI	YACGTR	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	3 cut(s)	42, 102, 283
BstMAI	GTCTC	2 cut(s)	335, 362
BstMBI	GATC	3 cut(s)	39, 99, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	3 cut(s)	50, 104, 232
BstPAI	GACNNNNGTC	1 cut(s)	374
BstSCI	CCNGG	3 cut(s)	48, 102, 230
BstSFI	CTRYAG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	102, 161
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	250, 256
CviAII	CATG	1 cut(s)	43
CviQI	GTAC	2 cut(s)	250, 256
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	3 cut(s)	41, 101, 282
DpnII	GATC	3 cut(s)	39, 99, 280
Eco130I	CCWWGG	2 cut(s)	219, 345
Eco31I	GGTCTC	2 cut(s)	335, 362
Eco47I	GGWCC	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	58
EcoRII	CCWGG	3 cut(s)	48, 102, 230
EcoT14I	CCWWGG	2 cut(s)	219, 345
ErhI	CCWWGG	2 cut(s)	219, 345
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 407
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	2 cut(s)	39, 280
Fnu4HI	GCNGC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	253
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	15, 136
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	2 cut(s)	79, 377
HpyAV	CCTTC	2 cut(s)	185, 383
HpyCH4III	ACNGT	3 cut(s)	86, 355, 373
HpyCH4IV	ACGT	2 cut(s)	57, 396
HpyCH4V	TGCA	5 cut(s)	166, 304, 319, 409, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	2 cut(s)	57, 396
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	2 cut(s)	39, 280
Kzo9I	GATC	3 cut(s)	39, 99, 280
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	433
MaeII	ACGT	2 cut(s)	57, 396
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	41, 101, 282
MboI	GATC	3 cut(s)	39, 99, 280
MboII	GAAGA	5 cut(s)	46, 145, 167, 200, 373
MfeI	CAATTG	1 cut(s)	305
MluCI	AATT	6 cut(s)	6, 23, 198, 305, 384, 411
MnlI	CCTC	3 cut(s)	118, 142, 145
MspR9I	CCNGG	3 cut(s)	50, 104, 232
MunI	CAATTG	1 cut(s)	305
MvaI	CCWGG	3 cut(s)	50, 104, 232
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	39, 99, 280
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	15, 136
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	168
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
Ppu21I	YACGTR	1 cut(s)	58
PshAI	GACNNNNGTC	1 cut(s)	374
Psp1406I	AACGTT	1 cut(s)	396
Psp6I	CCWGG	3 cut(s)	48, 102, 230
PspCI	CACGTG	1 cut(s)	58
PspGI	CCWGG	3 cut(s)	48, 102, 230
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	168
RsaI	GTAC	2 cut(s)	251, 257
RsaNI	GTAC	2 cut(s)	250, 256
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	3 cut(s)	39, 99, 280
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	50, 104, 232
SetI	ASST	6 cut(s)	54, 60, 129, 225, 347, 399
SfcI	CTRYAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	6 cut(s)	6, 23, 198, 305, 384, 411
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	3 cut(s)	48, 102, 230
StyI	CCWWGG	2 cut(s)	219, 345
TaaI	ACNGT	3 cut(s)	86, 355, 373
TaiI	ACGT	2 cut(s)	60, 399
TaqI	TCGA	3 cut(s)	74, 81, 312
TasI	AATT	6 cut(s)	6, 23, 198, 305, 384, 411
TatI	WGTACW	2 cut(s)	249, 255
TfiI	GAWTC	2 cut(s)	15, 136
TscAI	CASTG	2 cut(s)	102, 168
TseI	GCWGC	1 cut(s)	166
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	2 cut(s)	102, 168
VpaK11BI	GGWCC	1 cut(s)	52
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.