Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

50882114 .. 50883742

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACCTTCAGTTTTTGTTGGGTCTGTGTACAAGAAGATAGTAAAGAGAAAGGAAAAAAAAGCTCCAAGCTCCTGCCAGCAGCCCAAGCACGTACCGTTGTTGTTCTTAATATGATTGACGGCGTTATAGAACTGCTCCGTCAGATGATCATGTTCAAGGTCCACGTGAGAGATGTGAAACTGACGCTGGACTGTTTGAAACCAGTAGTCCAAGAGATATCAGAGTATAACAAGTTGTTGAATAATCTACCAATGGAGGAAGAGCTAGCATGGCAGGACTTGAAATTGCAAATGGAGGAGGGCGCTAATCTGGTTCGAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCTGCAAAAAGTATAAGTACAGCAACCAACTCTTTCAACTGGATCAATCGCTTCAAACACTGTTGCATTTGCTCGAAGTTCAGAAAACAAGGGATGTCCAGGAGACCTTAGTTTCCGTAAAGAACATAGAGACTGTGGTCCAGCGAATTGAAGGCAATATTTCTGCCATGCAGAGTAATCAATCCGCAACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

20.72

Weight (kDa)

8.23

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	39 - 162	7e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	1 cut(s)	396
AcvI	CACGTG	1 cut(s)	166
AfaI	GTAC	4 cut(s)	30, 94, 365, 539
AgsI	TTSAA	7 cut(s)	157, 199, 241, 283, 383, 401, 497
AjnI	CCWGG	2 cut(s)	338, 444
AluBI	AGCT	3 cut(s)	63, 70, 265
AluI	AGCT	3 cut(s)	63, 70, 265
Alw26I	GTCTC	2 cut(s)	443, 470
AlwI	GGATC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	160, 484
AsuII	TTCGAA	1 cut(s)	316
AsuNHI	GCTAGC	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	160, 484
BanI	GGYRCC	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	340, 446
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	443, 470
BfaI	CTAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	340, 446
Bme18I	GGWCC	2 cut(s)	160, 484
BmgT120I	GGNCC	2 cut(s)	160, 484
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	2 cut(s)	340, 446
BmtI	GCTAGC	1 cut(s)	269
BoxI	GACNNNNGTC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	361
Bpu14I	TTCGAA	1 cut(s)	316
BsaAI	YACGTR	2 cut(s)	92, 166
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	203, 390
BseBI	CCWGG	2 cut(s)	340, 446
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	445
BseNI	ACTGG	2 cut(s)	203, 390
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	443, 470
Bso31I	GGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	147, 388
BspACI	CCGC	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	337
BspOI	GCTAGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	396
BspQI	GCTCTTC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	203, 390
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	2 cut(s)	147, 388
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	340, 446
Bst4CI	ACNGT	4 cut(s)	97, 194, 408, 481
Bst6I	CTCTTC	1 cut(s)	255
BstAUI	TGTACA	1 cut(s)	28
BstBAI	YACGTR	2 cut(s)	92, 166
BstBI	TTCGAA	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	78, 267
BstDEI	CTNAG	1 cut(s)	454
BstF5I	GGATG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	2 cut(s)	150, 391
BstMAI	GTCTC	2 cut(s)	443, 470
BstMBI	GATC	2 cut(s)	147, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 271
BstNI	CCWGG	2 cut(s)	340, 446
BstPAI	GACNNNNGTC	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	338, 444
BstV1I	GCAGC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	78, 267
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	160, 484
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	4 cut(s)	29, 93, 364, 538
CviAII	CATG	3 cut(s)	151, 270, 514
CviJI	RGCY	4 cut(s)	63, 70, 83, 265
CviKI_1	RGCY	4 cut(s)	63, 70, 83, 265
CviQI	GTAC	4 cut(s)	29, 93, 364, 538
DdeI	CTNAG	1 cut(s)	454
DpnI	GATC	2 cut(s)	149, 390
DpnII	GATC	2 cut(s)	147, 388
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	443
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	160, 484
Eco72I	CACGTG	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	338, 444
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	3 cut(s)	154, 273, 517
FaiI	YATR	8 cut(s)	113, 128, 152, 228, 271, 360, 473, 515
FatI	CATG	3 cut(s)	150, 269, 513
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	306
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	154, 273, 517
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	29, 163
Hpy188I	TCNGA	3 cut(s)	144, 223, 429
Hpy8I	GTNNAC	2 cut(s)	29, 163
HpyAV	CCTTC	2 cut(s)	16, 491
HpyCH4III	ACNGT	4 cut(s)	97, 194, 408, 481
HpyCH4IV	ACGT	3 cut(s)	91, 165, 536
HpyCH4V	TGCA	4 cut(s)	289, 351, 412, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 271
HpyF3I	CTNAG	1 cut(s)	454
HpySE526I	ACGT	3 cut(s)	91, 165, 536
Hsp92II	CATG	3 cut(s)	154, 273, 517
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	147, 388
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	3 cut(s)	68, 75, 141
Lsp1109I	GCAGC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	3 cut(s)	91, 165, 536
MalI	GATC	2 cut(s)	149, 390
MboI	GATC	2 cut(s)	147, 388
MboII	GAAGA	2 cut(s)	47, 272
MluCI	AATT	2 cut(s)	284, 492
MnlI	CCTC	3 cut(s)	250, 289, 292
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	340, 446
MvaI	CCWGG	2 cut(s)	340, 446
MwoI	GCNNNNNNNGC	2 cut(s)	86, 271
NdeII	GATC	2 cut(s)	147, 388
NheI	GCTAGC	1 cut(s)	265
NlaIII	CATG	3 cut(s)	154, 273, 517
NlaIV	GGNNCC	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	82
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
Ppu21I	YACGTR	2 cut(s)	92, 166
PshAI	GACNNNNGTC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	338, 444
PspCI	CACGTG	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	338, 444
PspN4I	GGNNCC	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	160, 484
RsaI	GTAC	4 cut(s)	30, 94, 365, 539
RsaNI	GTAC	4 cut(s)	29, 93, 364, 538
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	147, 388
Sau96I	GGNCC	2 cut(s)	160, 484
ScrFI	CCNGG	2 cut(s)	340, 446
SfuI	TTCGAA	1 cut(s)	316
SinI	GGWCC	2 cut(s)	160, 484
Sse9I	AATT	2 cut(s)	284, 492
SsiI	CCGC	1 cut(s)	531
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	338, 444
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	4 cut(s)	97, 194, 408, 481
TaiI	ACGT	3 cut(s)	94, 168, 539
TaqI	TCGA	2 cut(s)	316, 420
TasI	AATT	2 cut(s)	284, 492
TatI	WGTACW	2 cut(s)	28, 363
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	1 cut(s)	80
TspGWI	ACGGA	2 cut(s)	128, 451
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	160, 484
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.