Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Reverse (-)

14420866 .. 14422462

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATTGACGGCGTTATAGAACTGCTCCGTCAGATGATCATGTTCAAGGTCCGCGTGAGAGATGTGAAACTGACGCTGGACTGTTTGAAACCAGTAGTCCAAGAGATATCAGAGTATAACAAGTTGTTGAATAATCTACCAATGGAGGAAGAGCTAGCATGGCAGGACTTGAAATTGCAAATGGAGGAGGGCGCTAATCTGGTTCGAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCTGCAAAAAGTATAAGTACAGCAACCAACTCTTTCAACTGGATCAATCGCTTCAAACACTGTTGCATTTGCTCGAAGTTCAGAAAACAAGGGATGTCCAGGAGACCTTAGTTTCTGTAAAGAACATAGAGACTGTGGTCCGGCGAATTGAAGGCAATATTTCTGCCATGCAGAGTAATCAATCCGCAACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

143

Amino Acids

16.65

Weight (kDa)

7.67

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 125	8.1e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccII	CGCG	1 cut(s)	54
AciI	CCGC	2 cut(s)	52, 420
AclWI	GGATC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	254, 428
AgsI	TTSAA	7 cut(s)	46, 88, 130, 172, 272, 290, 386
AjnI	CCWGG	2 cut(s)	227, 333
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	332, 359
AlwI	GGATC	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	49, 373
AsuII	TTCGAA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	49, 373
BanI	GGYRCC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	229, 335
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	332, 359
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	229, 335
Bme18I	GGWCC	2 cut(s)	49, 373
BmgT120I	GGNCC	2 cut(s)	49, 373
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	229, 335
BmtI	GCTAGC	1 cut(s)	158
BoxI	GACNNNNGTC	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	92, 279
BseBI	CCWGG	2 cut(s)	229, 335
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	92, 279
BseRI	GAGGAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	376
BsmAI	GTCTC	2 cut(s)	332, 359
Bso31I	GGTCTC	1 cut(s)	332
Bsp119I	TTCGAA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	36, 277
BspACI	CCGC	2 cut(s)	52, 420
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	226
BspOI	GCTAGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	144
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	92, 279
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	36, 277
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	229, 335
Bst4CI	ACNGT	3 cut(s)	83, 297, 370
Bst6I	CTCTTC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	2 cut(s)	39, 280
BstMAI	GTCTC	2 cut(s)	332, 359
BstMBI	GATC	2 cut(s)	36, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	2 cut(s)	229, 335
BstPAI	GACNNNNGTC	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	227, 333
BstUI	CGCG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	49, 373
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	253, 427
CviAII	CATG	3 cut(s)	40, 159, 403
CviJI	RGCY	1 cut(s)	154
CviKI_1	RGCY	1 cut(s)	154
CviQI	GTAC	2 cut(s)	253, 427
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	2 cut(s)	38, 279
DpnII	GATC	2 cut(s)	36, 277
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	49, 373
EcoRII	CCWGG	2 cut(s)	227, 333
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	43, 162, 406
FaiI	YATR	7 cut(s)	17, 41, 117, 160, 249, 362, 404
FatI	CATG	3 cut(s)	39, 158, 402
FbaI	TGATCA	1 cut(s)	36
FokI	GGATG	1 cut(s)	341
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	43, 162, 406
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	33, 112, 318
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	3 cut(s)	83, 297, 370
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	4 cut(s)	178, 240, 301, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	3 cut(s)	43, 162, 406
HspAI	GCGC	1 cut(s)	192
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 277
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	425
MalI	GATC	2 cut(s)	38, 279
MboI	GATC	2 cut(s)	36, 277
MboII	GAAGA	1 cut(s)	161
MluCI	AATT	2 cut(s)	173, 381
MnlI	CCTC	3 cut(s)	139, 178, 181
MroXI	GAANNNNTTC	1 cut(s)	211
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	2 cut(s)	229, 335
MvaI	CCWGG	2 cut(s)	229, 335
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	160
NdeII	GATC	2 cut(s)	36, 277
NheI	GCTAGC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	43, 162, 406
NlaIV	GGNNCC	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	333
PshAI	GACNNNNGTC	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	227, 333
PspGI	CCWGG	2 cut(s)	227, 333
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	49, 373
RsaI	GTAC	2 cut(s)	254, 428
RsaNI	GTAC	2 cut(s)	253, 427
SapI	GCTCTTC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	36, 277
Sau96I	GGNCC	2 cut(s)	49, 373
ScrFI	CCNGG	2 cut(s)	229, 335
SetI	ASST	5 cut(s)	51, 156, 222, 344, 428
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	2 cut(s)	49, 373
Sse9I	AATT	2 cut(s)	173, 381
SsiI	CCGC	2 cut(s)	52, 420
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	227, 333
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	83, 297, 370
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	205, 309
TasI	AATT	2 cut(s)	173, 381
TatI	WGTACW	1 cut(s)	252
TscAI	CASTG	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	49, 373
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.