Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007883.1

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

5128 .. 7953

Gene Structure 2826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007883.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggagaagcaggagaggaaggcggagctggactcgaaggaaggggaggggtcgaaggagttggcagcggcgaggcgcgtgagggagaagtggccggtggagaagatgatgatgttcaaggtccatgtgagagatgtgaagctgacgctcgactgtctgaaaccagtgatcgacgagatagcggaatataacaaggtattgaatcagccaatggatgaactgcaggacttgaaattgtgtattgaggagggaagagatctggttcgaaagtgctccaaggttggtgcctggagtttctgcaaaaagtatagatacaccacccaacttcatcgactcgataaatcgctgcacacgctcttgcatctactggaactgcagaaaacaagggatatcagggagaccttggtttcggtaaggaacatagagaccaccgtccagcgaattgagggcaatatttgtgtcaggcaaaatcagtctggaactaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

162

Amino Acids

19.01

Weight (kDa)

8.95

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	1 cut(s)	78
AciI	CCGC	3 cut(s)	23, 68, 182
AcoI	YGGCCR	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	118, 202, 232
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	28, 142
AluI	AGCT	2 cut(s)	28, 142
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	392, 419
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	65, 346
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	121
AsuII	TTCGAA	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	77, 333
BciT130I	CCWGG	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	392, 419
BfmI	CTRYAG	2 cut(s)	221, 374
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	3 cut(s)	66, 69, 347
BlsI	GCNGC	3 cut(s)	67, 70, 348
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	370
BoxI	GACNNNNGTC	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpmI	CTGGAG	1 cut(s)	310
Bpu14I	TTCGAA	1 cut(s)	265
BsaI	GGTCTC	2 cut(s)	392, 419
BsaJI	CCNNGG	2 cut(s)	276, 402
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	164, 372
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	276, 402
BseGI	GGATG	1 cut(s)	220
BseNI	ACTGG	2 cut(s)	164, 372
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	77, 333
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	392, 419
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	2 cut(s)	392, 419
Bsp119I	TTCGAA	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	168, 256
BspACI	CCGC	3 cut(s)	23, 68, 182
BspANI	GGCC	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	2 cut(s)	225, 378
BspT104I	TTCGAA	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	2 cut(s)	392, 419
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	164, 372
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	276, 402
BssMI	GATC	2 cut(s)	168, 256
BssT1I	CCWWGG	2 cut(s)	276, 402
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	155, 433
Bst6I	CTCTTC	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	171, 259
BstMAI	GTCTC	2 cut(s)	392, 419
BstMBI	GATC	2 cut(s)	168, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	289
BstPAI	GACNNNNGTC	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	2 cut(s)	221, 374
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	77, 333
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	1 cut(s)	154
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	4 cut(s)	28, 94, 142, 208
CviKI_1	RGCY	4 cut(s)	28, 94, 142, 208
DpnI	GATC	2 cut(s)	170, 258
DpnII	GATC	2 cut(s)	168, 256
EaeI	YGGCCR	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	276, 402
Eco31I	GGTCTC	2 cut(s)	392, 419
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	276, 402
ErhI	CCWWGG	2 cut(s)	276, 402
FaeI	CATG	1 cut(s)	128
FaiI	YATR	4 cut(s)	126, 189, 309, 422
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	66, 69, 347
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	66, 69, 347
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	3 cut(s)	66, 69, 347
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	32, 202, 333
HpaII	CCGG	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	477
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	13, 31, 35, 49
HpyCH4III	ACNGT	2 cut(s)	155, 433
HpyCH4V	TGCA	5 cut(s)	223, 300, 349, 361, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	168, 256
LmnI	GCTCC	2 cut(s)	25, 278
Lsp1109I	GCAGC	2 cut(s)	77, 333
LweI	GCATC	1 cut(s)	370
MalI	GATC	2 cut(s)	170, 258
MboI	GATC	2 cut(s)	168, 256
MboII	GAAGA	2 cut(s)	115, 264
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	3 cut(s)	233, 441, 484
MlyI	GAGTC	2 cut(s)	26, 327
MnlI	CCTC	7 cut(s)	9, 40, 66, 75, 238, 241, 439
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	2 cut(s)	168, 256
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	67, 70, 348
PleI	GAGTC	2 cut(s)	26, 327
PpsI	GAGTC	2 cut(s)	26, 327
PshAI	GACNNNNGTC	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	2 cut(s)	225, 378
PsuI	RGATCY	1 cut(s)	256
SatI	GCNGC	3 cut(s)	66, 69, 347
Sau3AI	GATC	2 cut(s)	168, 256
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	26, 327
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	6 cut(s)	30, 123, 144, 198, 282, 404
SfaNI	GCATC	1 cut(s)	370
SfcI	CTRYAG	2 cut(s)	221, 374
SfuI	TTCGAA	1 cut(s)	265
SinI	GGWCC	1 cut(s)	121
Sse9I	AATT	3 cut(s)	233, 441, 484
SsiI	CCGC	3 cut(s)	23, 68, 182
SspI	AATATT	1 cut(s)	454
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	276, 402
TaaI	ACNGT	2 cut(s)	155, 433
TaqI	TCGA	7 cut(s)	35, 53, 150, 171, 265, 331, 336
TasI	AATT	3 cut(s)	233, 441, 484
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	2 cut(s)	65, 346
TspDTI	ATGAA	2 cut(s)	231, 317
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.