Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

54209955 .. 54211216

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACCTTCAGTTTTTACTGGGTCTGTGTACAAGAAGATAGTAAAGAGAAACGAAAAAAAAAAAAGATGATCATGTTCAAGGTCCACGTGAGAGATGTGAAACTGACGCTGGAGTGTTTGAAACCAGTAATCCAAGAGATATCAGAGTATAACAAGTTGTTGAATAATCTACCAATGGAGGAGGAGCTAGCACTGCAGGACTTGAAATTGCAAATGGAGGCGGGCGCTAATCTGGTTCGAAAGTGTTCCAAGGTTGGTGCCTGGAGTTTCTGCAAAAAGTATAAGTACAGCAACCAACTCTTTCAACTGGATCAATCGCTTCAAACACTGTTGCATTTGCTCGAAGTTCAGAAAACAAGGGATGTCCAGGAGACCTTAGTTTCTGTAAAGAACATAGAGACTGTGGTCCAGCGAATTGAAGCCAATATTTCTGCCATGCAGATTAATCAATCAGCAGCGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

18.02

Weight (kDa)

8.99

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	18 - 136	1.3e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AciI	CCGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	318
AcvI	CACGTG	1 cut(s)	88
AfaI	GTAC	3 cut(s)	30, 287, 461
AgsI	TTSAA	7 cut(s)	79, 121, 163, 205, 305, 323, 419
AjnI	CCWGG	2 cut(s)	260, 366
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	2 cut(s)	365, 392
AlwI	GGATC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	455
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	82, 406
AsuII	TTCGAA	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	187
AvaII	GGWCC	2 cut(s)	82, 406
BanI	GGYRCC	1 cut(s)	257
BbrPI	CACGTG	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	262, 368
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	365, 392
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	2 cut(s)	262, 368
Bme18I	GGWCC	2 cut(s)	82, 406
BmgT120I	GGNCC	2 cut(s)	82, 406
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	262, 368
BmrI	ACTGGG	1 cut(s)	28
BmtI	GCTAGC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	28
BoxI	GACNNNNGTC	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	131, 283
Bpu14I	TTCGAA	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	249
Bse1I	ACTGG	3 cut(s)	23, 125, 312
BseBI	CCWGG	2 cut(s)	262, 368
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	367
BseNI	ACTGG	3 cut(s)	23, 125, 312
BseRI	GAGGAG	2 cut(s)	194, 197
BshNI	GGYRCC	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	365, 392
Bso31I	GGTCTC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	69, 310
BspACI	CCGC	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	318
BspT104I	TTCGAA	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	23, 125, 312
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	2 cut(s)	69, 310
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	262, 368
Bst4CI	ACNGT	2 cut(s)	330, 403
BstAUI	TGTACA	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	189, 223
BstDEI	CTNAG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	72, 313
BstMAI	GTCTC	2 cut(s)	365, 392
BstMBI	GATC	2 cut(s)	69, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	2 cut(s)	262, 368
BstPAI	GACNNNNGTC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	260, 366
BstSFI	CTRYAG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	2 cut(s)	191, 326
Cac8I	GCNNGC	2 cut(s)	189, 223
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	82, 406
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	29, 286, 460
CviAII	CATG	2 cut(s)	73, 436
CviJI	RGCY	2 cut(s)	187, 422
CviKI_1	RGCY	2 cut(s)	187, 422
CviQI	GTAC	3 cut(s)	29, 286, 460
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	2 cut(s)	71, 312
DpnII	GATC	2 cut(s)	69, 310
Eco130I	CCWWGG	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	82, 406
Eco72I	CACGTG	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	260, 366
EcoRV	GATATC	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	76, 439
FaiI	YATR	5 cut(s)	74, 150, 282, 395, 437
FatI	CATG	2 cut(s)	72, 435
FauI	CCCGC	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	131, 283
HaeII	RGCGCY	1 cut(s)	228
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	76, 439
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
Hpy166II	GTNNAC	2 cut(s)	29, 85
Hpy188I	TCNGA	2 cut(s)	145, 351
Hpy8I	GTNNAC	2 cut(s)	29, 85
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	330, 403
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	5 cut(s)	196, 211, 273, 334, 439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	76, 439
HspAI	GCGC	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 310
LmnI	GCTCC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	87
MalI	GATC	2 cut(s)	71, 312
MboI	GATC	2 cut(s)	69, 310
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	2 cut(s)	206, 414
MnlI	CCTC	3 cut(s)	172, 175, 211
MroXI	GAANNNNTTC	1 cut(s)	244
MseI	TTAA	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	262, 368
MvaI	CCWGG	2 cut(s)	262, 368
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	69, 310
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	76, 439
NlaIV	GGNNCC	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	1 cut(s)	457
PmaCI	CACGTG	1 cut(s)	88
PmlI	CACGTG	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	404
PshBI	ATTAAT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	260, 366
PspCI	CACGTG	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	260, 366
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	82, 406
PstI	CTGCAG	1 cut(s)	198
RsaI	GTAC	3 cut(s)	30, 287, 461
RsaNI	GTAC	3 cut(s)	29, 286, 460
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	69, 310
Sau96I	GGNCC	2 cut(s)	82, 406
ScrFI	CCNGG	2 cut(s)	262, 368
SetI	ASST	6 cut(s)	8, 84, 90, 189, 255, 377
SfcI	CTRYAG	1 cut(s)	194
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	2 cut(s)	82, 406
Sse9I	AATT	2 cut(s)	206, 414
SsiI	CCGC	1 cut(s)	221
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	260, 366
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	330, 403
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	238, 342
TasI	AATT	2 cut(s)	206, 414
TatI	WGTACW	2 cut(s)	28, 285
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	198, 333
TseI	GCWGC	1 cut(s)	455
TspRI	CASTG	2 cut(s)	198, 333
VpaK11BI	GGWCC	2 cut(s)	82, 406
VspI	ATTAAT	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.