Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000780

Physical Location & Seq

Genomic Coordinates Forward (+)

55554470 .. 55555411

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG413800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGATGTTCAAGGTCCATGTGAGAGATGTGAAGCTGACGTTCGACTGTCTGAAACCAGTGATCGACGAGATAGCGGAATATAACAAGGTATTGAATCAGCCAATGGATGAACTGCAGGACTTGAAATTGTGTATTGAGGAGGGAAGAGATCTGGTTCGAAAGTGCTCCAAGGTTGGTGCCTGGAGTTTCTGCAAAAAGTATAGATACACCACCCAACTTCATCGACTCGATAAATCGCTGCACACGCTCTTGCATCTACTGGAACTGCAGAAAACAAGGGATATCAGGGAGACCTTGGTTTCGGTAAGGAACATAGAGACCACCGTCCAGCGAATTGAGGGCAATATTTGTGTCAGGCAAAATCAGTCTGGAACTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.96

Weight (kDa)

8.85

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	2 - 111	2.3e-21	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32810 FvH4_5g32810 FvH4_5g32820 FvH4_5g32830
malus_domestica	MD02G1165800.v1.1 MD15G1022900.v1.1 MD15G1277300.v1.1
prunus_persica	Prupe.5G127600_v2.0.a1
pyrus_communis	pycom02g13140 pycom15g24060 pycom15g24100 pycom15g24130
rosa_chinensis	RchiOBHm_Chr2g0143661 RchiOBHm_Chr7g0230541 RchiOBHm_Chr7g0230551 RchiOBHm_Chr7g0230651 RchiOBHm_Chr7g0230701
rosa_laevigata	RLG00000001482 RLG00000001487 RLG00000002333 RLG00000020057
rosa_multiflora	Rmu_sc0002222.1_g000006 Rmu_sc0002799.1_g000008 Rmu_sc0002799.1_g000010 Rmu_sc0002799.1_g000011 Rmu_sc0002799.1_g000013 Rmu_sc0007883.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101570 Rroxscaffold_3G00229820 Rroxscaffold_3G00229840 Rroxscaffold_3G00229950 Rroxscaffold_3G00230000 Rroxscaffold_3G00230010 Rroxscaffold_3G00230020 Rroxscaffold_3G00230030
rosa_rugosa	Rorug02G0384500 Rorug07G0261400 Rorug07G0261500 Rorug07G0261600 Rorug07G0261700 Rorug07G0261900
rosa_samantha	Rh2AG169200 Rh2AG436600 Rh2BG444200 Rh2CG422900 Rh2DG177700 Rh2DG454500 Rh5BG005200 Rh7AG321600 Rh7AG410000 Rh7AG410100 Rh7AG412600 Rh7AG412700 Rh7AG412800 Rh7AG413700 Rh7AG413800 Rh7CG338100 Rh7CG430500 Rh7CG430600 Rh7CG430800 Rh7CG432500 Rh7CG432600 Rh7DG319700 Rh7DG408100 Rh7DG408200 Rh7DG408300 Rh7DG408400 Rh7DG408500 Rh7DG409300
rosa_wichuraiana	Rw7G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	13, 97, 127
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	2 cut(s)	287, 314
ApeKI	GCWGC	1 cut(s)	241
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	287, 314
BfmI	CTRYAG	2 cut(s)	116, 269
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	160
BsaI	GGTCTC	2 cut(s)	287, 314
BsaJI	CCNNGG	2 cut(s)	171, 297
Bse1I	ACTGG	2 cut(s)	59, 267
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	171, 297
BseGI	GGATG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	59, 267
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	287, 314
Bso31I	GGTCTC	2 cut(s)	287, 314
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	63, 151
BspACI	CCGC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	2 cut(s)	120, 273
BspT104I	TTCGAA	1 cut(s)	160
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	2 cut(s)	287, 314
BsrI	ACTGG	2 cut(s)	59, 267
BssECI	CCNNGG	2 cut(s)	171, 297
BssMI	GATC	2 cut(s)	63, 151
BssT1I	CCWWGG	2 cut(s)	171, 297
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	50, 328
Bst6I	CTCTTC	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	66, 154
BstMAI	GTCTC	2 cut(s)	287, 314
BstMBI	GATC	2 cut(s)	63, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	116, 269
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	2 cut(s)	37, 103
CviKI_1	RGCY	2 cut(s)	37, 103
DpnI	GATC	2 cut(s)	65, 153
DpnII	GATC	2 cut(s)	63, 151
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	171, 297
Eco31I	GGTCTC	2 cut(s)	287, 314
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	2 cut(s)	171, 297
ErhI	CCWWGG	2 cut(s)	171, 297
FaeI	CATG	1 cut(s)	23
FaiI	YATR	4 cut(s)	21, 84, 204, 317
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	242
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	242
GluI	GCNGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	205
Hin1II	CATG	1 cut(s)	23
HinfI	GANTC	2 cut(s)	97, 228
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	372
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	50, 328
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	5 cut(s)	118, 195, 244, 256, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	63, 151
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	41
MalI	GATC	2 cut(s)	65, 153
MboI	GATC	2 cut(s)	63, 151
MboII	GAAGA	1 cut(s)	159
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	170
MluCI	AATT	3 cut(s)	128, 336, 379
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	133, 136, 334
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	2 cut(s)	63, 151
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PshAI	GACNNNNGTC	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	2 cut(s)	120, 273
PsuI	RGATCY	1 cut(s)	151
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	63, 151
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	6 cut(s)	18, 39, 44, 93, 177, 299
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	2 cut(s)	116, 269
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	3 cut(s)	128, 336, 379
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	171, 297
TaaI	ACNGT	2 cut(s)	50, 328
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	5 cut(s)	45, 66, 160, 226, 231
TasI	AATT	3 cut(s)	128, 336, 379
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	126, 212
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.